Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g02042 ATGGCCTTTCGCCCCTTCTCCTGCTGTGGAATTGGTTTGGATCGGAAAGAAAGAGGGAAGAAACAGCAAACATGGAGGGTCTTTTCATTGAAAGAATTACACTCGGCTACCAATAATTTTAATTATGATAACAAGCTTGGAGAAGGAGGATTTGGTAGCGTTTACTGGGGACAGCTGTGGGATGGATCACAAATTGCAGTTAAGAGGTTGAAGGTCTGGAGCAACAAAGCAGACATGGAATTCTCTGTGGAAGTTGAGATACTGGCCCGAGTTAGGCACAAGAATCTATTAAGTTTACGTGGATACTGTGCTGAAGGGCAAGAGCGCTTGATCGTGTATGACTACATGCCCAATCTAAGTCTACTCTCCCATCTACATGGACATCACTCATCGGAATGTCACCTTGATTGGAAACGTCGTATGAAAATCGCCATTGGGTCTGCCGAGGGAATTGCCTATCTTCACCATCAAGCAACCCCACATATCATTCATCGAGACATCAAAGCTAGCAATGTTTTGCTGGATCCTGATTTCCAAGCTCGTGTAGCTGACTTCGGATTTGCAAAACTCATCCCCGATGGTGCAACACATGTAACTACAAGAGTCAAGGGCACACTCGGATACCTCGCTCCTGAATATGCCATGTTAGGTAAGGCATCAGAGAGTTGTGACGTATACAGCTTTGGCATTCTCCTGCTTGAGCTTGCCACCGGCAAGAAGCCACTTGAGAAATTAAGTGCAACAATGAAACGCACAATCATAGATTGGGCACTACCGATTGTAGTTGAGAAAAATTTCGAGGAGCTTGCAGACCCAAAGCTAAATGGAGACTACAATGCAGACGAGCTAAAGAGGGTCATCCTCGTTGCACTCTGTTGTTCCCATTCACGACCAGAGAAACGACCAACCATGCTCGAGGTGGTTGAACTACTAAAAGGAGAATCAAAAGAGAAGCTAGCGAAATTAGAAGGCGATGAACTGTTCAAGAGCCATCAAGTAGCTGCACAAACTACAGAAATAAAAGCTGGTGAAGATAGCTCAGACTTCATATCAGAAGAACAGGATTCAAAAGAGAAGGTGAAAGAGAATTCAACACAAAACCCCACATGA 1110 44.59 MAFRPFSCCGIGLDRKERGKKQQTWRVFSLKELHSATNNFNYDNKLGEGGFGSVYWGQLWDGSQIAVKRLKVWSNKADMEFSVEVEILARVRHKNLLSLRGYCAEGQERLIVYDYMPNLSLLSHLHGHHSSECHLDWKRRMKIAIGSAEGIAYLHHQATPHIIHRDIKASNVLLDPDFQARVADFGFAKLIPDGATHVTTRVKGTLGYLAPEYAMLGKASESCDVYSFGILLLELATGKKPLEKLSATMKRTIIDWALPIVVEKNFEELADPKLNGDYNADELKRVILVALCCSHSRPEKRPTMLEVVELLKGESKEKLAKLEGDELFKSHQVAAQTTEIKAGEDSSDFISEEQDSKEKVKENSTQNPT 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 25371704 25375224 - MELO3C017861.2.1 Cme07g02042 334058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g02042 369 SMART serkin_6 40 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g02042 369 ProSitePatterns Protein kinases ATP-binding region signature. 46 68 IPR017441 GO:0005524
Cme07g02042 369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Cme07g02042 369 PANTHER BNAA05G14800D PROTEIN 1 366 - -
Cme07g02042 369 MobiDBLite consensus disorder prediction 345 362 - -
Cme07g02042 369 Gene3D Transferase(Phosphotransferase) domain 1 116 328 - -
Cme07g02042 369 SUPERFAMILY Protein kinase-like (PK-like) 23 311 IPR011009 -
Cme07g02042 369 MobiDBLite consensus disorder prediction 339 369 - -
Cme07g02042 369 Pfam Protein kinase domain 41 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g02042 369 Gene3D Phosphorylase Kinase; domain 1 13 115 - -
Cme07g02042 369 PANTHER OS01G0750732 PROTEIN 1 366 - -
Cme07g02042 369 ProSiteProfiles Protein kinase domain profile. 40 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g02042 369 CDD STKc_IRAK 46 313 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00943 Cme-Chr6:6637827 Cme07g02042 Cme-Chr7:25371704 1.75E-147 dispersed
Cme07g02042 Cme-Chr7:25371704 Cme05g01976 Cme-Chr5:28312913 1.18E-91 dispersed
Cme07g02042 Cme-Chr7:25371704 Cme02g01367 Cme-Chr2:19773821 5.40E-95 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65039 PF00069 Pkinase 5.20E-45 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g02042 - - csv:101212993 730.324