Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g02065 ATGGCACATATTCTGCTTCATGGCACCCTTCATGTCACCATCTATGAAGTTGATAAGCTTCACTCCGGTGGTCGCAATTTCTTGAAACAGTTGGTTGAAAACGTAGAGGAAGCAGTTGGGTTTGGGAGAGGAATAACGAGGCTATATGCAACCATTGATCTTGAGAAAGCCAGAGTTGGAAGAACAAGAAGGCTTGAAAGAGAACATTCAAATCCAAAATGGTACGAAACTTTCCATATCTACTGTGCTCATATGGCTTCCAACATCATCTTCACTGTCAAAGACGACAACCCAATTGGCGCAACCTTAATCGGCAGAGCTTATTTACCTGTTCGTGAGATCATCCGTGGTGATGAAGTTGACAAATGGGTTCCAATCTTAGATGAACAAAAGAAACCCATTCGTGGGGAACCCAAAATTCACGTCAAGTTACAGTTCTTTGATGTCACTAAGGATCAAAACTGGGGTCGTGGCATCAAAAGTCCCAAGTTTCCTGGTGTTCCCTACACTTACTTCTCTCAAAGACGTGGTTGTAAGGTAACTCTGTATCAAGATGCTCATGTTCCTGATAACTTTATCCCTAAAATCCCTCTTGCTGGGGGGAAGTTTTATGAGCCTCATAGATGTTGGGAAGATGTTTTTGATGCGATTATGAATGCTAAACATTTGATTTATATTTCTGGATGGTCTGTTTATACTGAGATTTCTTTGGTGAGAGATAAAAGAAGGCCAAAGCCTGGTGGAGATATAATGCTCGGTGAATTGCTTAAGAAAAAAGCTGGAGAAGGTGTTACAGTTCTTTTGCTTATTTGGAATGATACGACTTCCGTTCCTTTTTTCAAGGAGGAGGGGTTAATGGCAACTCATGATGAAGATACTGCTAAGTTCTTTGCTAATACTGATGTTCATTGTGTTTTGTGTCCTCGTAATCCTGATGATGGGGCTAATGTTATTCAGGATATTGCTGTTGGGACAATGTTCACTCATCATCAGAAGATTGTTGTGGTGGATAGTGCTTTGCCAAATGGGGATCCAAGTAAAAGGAGAATTGTTAGTTTTGTTGGTGGGCTTGATCTTTGTGATGGTAGGACTTTGGATTCTGCTCATCATGATGATTTCCATCAGCCAAATTTTGCGGGCACTTCCATTAACAAAGGTGGTCCTAGAGAGCCGTGGCACGATATCCATTCCCGCCTCGAAGGACCTGTTGCGTGGGATGTTTTGCACAATTTTGAACAGAGATGGAGGAAGCAAGGTGGGAAGGATTTGCTTGTGAAGTTGAGGGATTTAGATCAGATCTTCATCACTCCATCACCTGTCACCTTCCCGGACGACTTTGATAGTTGGAATGTTCAAGTTTTCAGGTCTATCGATGGTGGGGCAGCTTTTGGTTTCCCCGACTCGCCTGAAGAAGCAGCAAAAGCTGGATTGGTAAGTGGAAAGGACAACACCATTGATCGAAGTATTCAAGATGCTTACATTAATGCTATTAGAAGAGCAAAGAATTTCATATACATTGAGAATCAGTATTTCCTTGGAAGCTCATTTGAATGGAGAGGTGATGATGTGAAGCCTGAGGTAATTAACGCCCTGCATCTAATTCCAAAGGAACTTTCTCTTAAGATTATGAGTAAGATTGAAGCAAGAGAAAGGTTCACAGTGTACATTCTTGTTCCAATGTGGCCTGAAGGATTTCCTGAAGGGGGAACAGTTCAGGCAATATTAGATTGGCAAAGGAGAACAATGGAAATGATGTATAAAGATATAGTTCTAGCTCTTAGAGCTAATGGGGTTGAAGAAGATCCTAGAAACTATCTGACATTCTTTTGTGTCGGGAATCGTGAAGTTAAAAAGCCTGGAGAATATGAACCATCAGAATCACCTGATGAAAATTCTGATTACCTTAGAGCCCAGCAATCTAGGCGCTTCATGATTTATGTTCATTCCAAGATGATGATTGTTGATGATGAATACATAATAGTGGGATCAGCCAACATCAACCAAAGATCAATGGATGGTGCAAGGGACTCAGAGATAGCAATGGGAGGTTACCAACCATATCATTTGTCAGCTAGAGAGCCAGCAAGAGGCCAAATCCATGGCTTCCGTTTGGCATTGTGGTATGAACATTTAGGATTGCTTCATCAATCCTTCCTCTTCCCAGAAAGTATTGAATGTGTTAAAACAGTAAACCAACTTGCTGATAAATATTGGGATCTATACTCGAGTGAGACCTTTGATCGTGACCTTCCTGGCCACTTGCTTCGCTACCCCATTGCGGTCTCCGCTGACGGTCAAGTTACCGAGCTTCCTGGGTTCCAGTTCTTCCCTGATACTAAGGCGCGAGTTCTAGGTAACAAATCTAATTATATCCCTCCAATCCTCACTACTTGA 2394 41.94 MAHILLHGTLHVTIYEVDKLHSGGRNFLKQLVENVEEAVGFGRGITRLYATIDLEKARVGRTRRLEREHSNPKWYETFHIYCAHMASNIIFTVKDDNPIGATLIGRAYLPVREIIRGDEVDKWVPILDEQKKPIRGEPKIHVKLQFFDVTKDQNWGRGIKSPKFPGVPYTYFSQRRGCKVTLYQDAHVPDNFIPKIPLAGGKFYEPHRCWEDVFDAIMNAKHLIYISGWSVYTEISLVRDKRRPKPGGDIMLGELLKKKAGEGVTVLLLIWNDTTSVPFFKEEGLMATHDEDTAKFFANTDVHCVLCPRNPDDGANVIQDIAVGTMFTHHQKIVVVDSALPNGDPSKRRIVSFVGGLDLCDGRTLDSAHHDDFHQPNFAGTSINKGGPREPWHDIHSRLEGPVAWDVLHNFEQRWRKQGGKDLLVKLRDLDQIFITPSPVTFPDDFDSWNVQVFRSIDGGAAFGFPDSPEEAAKAGLVSGKDNTIDRSIQDAYINAIRRAKNFIYIENQYFLGSSFEWRGDDVKPEVINALHLIPKELSLKIMSKIEARERFTVYILVPMWPEGFPEGGTVQAILDWQRRTMEMMYKDIVLALRANGVEEDPRNYLTFFCVGNREVKKPGEYEPSESPDENSDYLRAQQSRRFMIYVHSKMMIVDDEYIIVGSANINQRSMDGARDSEIAMGGYQPYHLSAREPARGQIHGFRLALWYEHLGLLHQSFLFPESIECVKTVNQLADKYWDLYSSETFDRDLPGHLLRYPIAVSADGQVTELPGFQFFPDTKARVLGNKSNYIPPILTT 797
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 25517572 25522646 - MELO3C017887.2.1 Cme07g02065 334081

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g02065 797 ProSiteProfiles C2 domain profile. 1 124 IPR000008 -
Cme07g02065 797 PANTHER PHOSPHOLIPASE D 2 797 IPR015679 -
Cme07g02065 797 PANTHER PHOSPHOLIPASE D 2 797 - -
Cme07g02065 797 Pfam C2 domain 8 126 IPR000008 -
Cme07g02065 797 Pfam Phospholipase D C terminal 716 787 IPR024632 -
Cme07g02065 797 Gene3D Endonuclease Chain A 200 431 - -
Cme07g02065 797 SMART C2_3c 9 123 IPR000008 -
Cme07g02065 797 Gene3D C2 domain 6 156 IPR035892 -
Cme07g02065 797 SUPERFAMILY Phospholipase D/nuclease 489 727 - -
Cme07g02065 797 CDD C2_plant_PLD 2 147 - -
Cme07g02065 797 PIRSF PLD_plant 1 797 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Cme07g02065 797 SMART pld_4 643 670 IPR001736 GO:0003824
Cme07g02065 797 SMART pld_4 325 363 IPR001736 GO:0003824
Cme07g02065 797 SUPERFAMILY Phospholipase D/nuclease 150 425 - -
Cme07g02065 797 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 325 363 IPR001736 GO:0003824
Cme07g02065 797 Pfam Phospholipase D Active site motif 325 363 IPR001736 GO:0003824
Cme07g02065 797 Pfam Phospholipase D Active site motif 644 670 IPR001736 GO:0003824
Cme07g02065 797 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 643 670 IPR001736 GO:0003824
Cme07g02065 797 Gene3D Endonuclease Chain A 461 684 - -
Cme07g02065 797 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 149 IPR035892 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g02065 K01115 PLD1_2; phospholipase D1/2 [EC:3.1.4.4] - csv:101215246 1614.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01617 Cme-Chr3:25062581 Cme07g02065 Cme-Chr7:25517572 0 dispersed
Cme04g01195 Cme-Chr4:16327414 Cme07g02065 Cme-Chr7:25517572 0 dispersed
Cme07g02065 Cme-Chr7:25517572 Cme11g02535 Cme-Chr11:31792866 0 dispersed
Cme11g02046 Cme-Chr11:28223054 Cme07g02065 Cme-Chr7:25517572 1.37E-12 transposed
Cme01g02610 Cme-Chr1:33760704 Cme07g02065 Cme-Chr7:25517572 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme01g02610 . 28 844 Phospholipase D Gene Family (Wang group) AT1G52570 78.4 0.0e+00 1373.6
Cme07g02065 . 1 797 Phospholipase D Gene Family (Wang group) AT1G52570 74.0 0.0e+00 1299.6
Cme03g01617 . 1220 2032 Phospholipase D Gene Family (Wang group) AT1G52570 63.2 0.0e+00 1101.3
Cme04g01195 . 31 761 Phospholipase D Gene Family (Wang group) AT1G55180 60.1 1.2e-269 926.0
Cme01g02610 . 33 844 Phospholipase D Gene Family (Wang group) AT3G15730 79.0 0.0e+00 1380.9
Cme07g02065 . 1 797 Phospholipase D Gene Family (Wang group) AT3G15730 74.0 0.0e+00 1306.6
Cme03g01617 . 1220 2032 Phospholipase D Gene Family (Wang group) AT3G15730 63.8 0.0e+00 1097.8
Cme03g01617 . 1305 2031 Phospholipase D Gene Family (Wang group) AT5G25370 66.8 1.7e-300 1028.5
Cme07g02065 . 72 797 Phospholipase D Gene Family (Wang group) AT5G25370 62.9 3.4e-288 987.6
Cme01g02610 . 119 844 Phospholipase D Gene Family (Wang group) AT5G25370 62.9 3.8e-287 984.2
Cme11g02535 . 128 1103 Phospholipase D Gene Family (Wang group) AT2G42010 71.4 0.0e+00 1438.7
Cme06g02664 . 14 851 Phospholipase D Gene Family (Wang group) AT2G42010 68.6 0.0e+00 1243.8
Cme03g01540 . 4 846 Phospholipase D Gene Family (Wang group) AT2G42010 51.8 1.6e-262 902.9
Cme08g00969 . 4 849 Phospholipase D Gene Family (Wang group) AT2G42010 51.9 1.6e-262 902.9
Cme11g02535 . 337 1103 Phospholipase D Gene Family (Wang group) AT4G00240 78.4 0.0e+00 1260.7
Cme06g02664 . 83 851 Phospholipase D Gene Family (Wang group) AT4G00240 69.0 0.0e+00 1131.3
Cme08g00969 . 71 849 Phospholipase D Gene Family (Wang group) AT4G00240 54.4 8.2e-253 870.2
Cme03g01540 . 65 846 Phospholipase D Gene Family (Wang group) AT4G00240 54.3 1.7e-250 862.4
Cme11g02535 . 275 888 Phospholipase D Gene Family (Wang group) AT4G11830 67.0 5.0e-248 854.0
Cme06g02664 . 12 637 Phospholipase D Gene Family (Wang group) AT4G11830 64.9 2.1e-246 848.6
Cme11g02535 . 257 1103 Phospholipase D Gene Family (Wang group) AT4G11840 64.5 0.0e+00 1146.0
Cme06g02664 . 7 851 Phospholipase D Gene Family (Wang group) AT4G11840 65.4 0.0e+00 1139.4
Cme08g00969 . 4 846 Phospholipase D Gene Family (Wang group) AT4G11840 51.0 2.0e-249 859.0
Cme11g02535 . 257 1103 Phospholipase D Gene Family (Wang group) AT4G11850 68.7 0.0e+00 1211.4
Cme06g02664 . 7 851 Phospholipase D Gene Family (Wang group) AT4G11850 68.3 0.0e+00 1203.0
Cme08g00969 . 4 849 Phospholipase D Gene Family (Wang group) AT4G11850 51.3 5.7e-255 877.5
Cme03g01540 . 13 846 Phospholipase D Gene Family (Wang group) AT4G11850 50.2 6.3e-246 847.4
Cme08g00969 . 1 689 Phospholipase D Gene Family (Wang group) AT4G35790 70.9 3.6e-300 1027.3
Cme03g01540 . 7 675 Phospholipase D Gene Family (Wang group) AT4G35790 64.1 4.3e-269 924.1
Cme11g02535 . 282 932 Phospholipase D Gene Family (Wang group) AT4G35790 50.9 9.8e-197 683.7
Cme05g01583 . 35 1109 Phospholipase D Gene Family (Wang group) AT3G05630 63.0 0.0e+00 1349.0
Cme11g02046 . 40 1113 Phospholipase D Gene Family (Wang group) AT3G05630 61.5 0.0e+00 1327.4
Cme11g02046 . 1 990 Phospholipase D Gene Family (Wang group) AT3G16785 73.3 0.0e+00 1459.1
Cme05g01583 . 22 988 Phospholipase D Gene Family (Wang group) AT3G16785 62.1 0.0e+00 1203.0
Cme01g02610 . 33 844 Phospholipase D Gene Family (Wang group) AT3G15730 79.0 0.0e+00 1380.9
Cme07g02065 . 1 797 Phospholipase D Gene Family (Wang group) AT3G15730 74.0 0.0e+00 1306.6
Cme03g01617 . 1220 2032 Phospholipase D Gene Family (Wang group) AT3G15730 63.8 0.0e+00 1097.8
Cme01g02610 . 28 844 Phospholipase D Gene Family (Wang group) AT1G52570 78.4 0.0e+00 1373.6
Cme07g02065 . 1 797 Phospholipase D Gene Family (Wang group) AT1G52570 74.0 0.0e+00 1299.6
Cme03g01617 . 1220 2032 Phospholipase D Gene Family (Wang group) AT1G52570 63.2 0.0e+00 1101.3
Cme11g02535 . 128 1103 Phospholipase D Gene Family (Wang group) AT2G42010 71.4 0.0e+00 1438.7
Cme06g02664 . 14 851 Phospholipase D Gene Family (Wang group) AT2G42010 68.6 0.0e+00 1243.8
Cme03g01540 . 4 846 Phospholipase D Gene Family (Wang group) AT2G42010 51.8 1.6e-262 902.9
Cme08g00969 . 4 849 Phospholipase D Gene Family (Wang group) AT2G42010 51.9 1.6e-262 902.9
Cme11g02535 . 337 1103 Phospholipase D Gene Family (Wang group) AT4G00240 78.4 0.0e+00 1260.7
Cme06g02664 . 83 851 Phospholipase D Gene Family (Wang group) AT4G00240 69.0 0.0e+00 1131.3
Cme08g00969 . 71 849 Phospholipase D Gene Family (Wang group) AT4G00240 54.4 8.2e-253 870.2
Cme03g01540 . 65 846 Phospholipase D Gene Family (Wang group) AT4G00240 54.3 1.7e-250 862.4
Cme11g02535 . 257 1103 Phospholipase D Gene Family (Wang group) AT4G11850 68.7 0.0e+00 1211.4
Cme06g02664 . 7 851 Phospholipase D Gene Family (Wang group) AT4G11850 68.3 0.0e+00 1203.0
Cme08g00969 . 4 849 Phospholipase D Gene Family (Wang group) AT4G11850 51.3 5.7e-255 877.5
Cme03g01540 . 13 846 Phospholipase D Gene Family (Wang group) AT4G11850 50.2 6.3e-246 847.4
Cme11g02535 . 275 888 Phospholipase D Gene Family (Wang group) AT4G11830 67.0 5.0e-248 854.0
Cme06g02664 . 12 637 Phospholipase D Gene Family (Wang group) AT4G11830 64.9 2.1e-246 848.6
Cme11g02535 . 257 1103 Phospholipase D Gene Family (Wang group) AT4G11840 64.5 0.0e+00 1146.0
Cme06g02664 . 7 851 Phospholipase D Gene Family (Wang group) AT4G11840 65.4 0.0e+00 1139.4
Cme08g00969 . 4 846 Phospholipase D Gene Family (Wang group) AT4G11840 51.0 2.0e-249 859.0
Cme08g00969 . 1 689 Phospholipase D Gene Family (Wang group) AT4G35790 70.9 3.6e-300 1027.3
Cme03g01540 . 7 675 Phospholipase D Gene Family (Wang group) AT4G35790 64.1 4.3e-269 924.1
Cme11g02535 . 282 932 Phospholipase D Gene Family (Wang group) AT4G35790 50.9 9.8e-197 683.7
Cme04g01195 . 31 761 Phospholipase D Gene Family (Wang group) AT1G55180 60.1 1.2e-269 926.0
Cme03g01617 . 1305 2031 Phospholipase D Gene Family (Wang group) AT5G25370 66.8 1.7e-300 1028.5
Cme07g02065 . 72 797 Phospholipase D Gene Family (Wang group) AT5G25370 62.9 3.4e-288 987.6
Cme01g02610 . 119 844 Phospholipase D Gene Family (Wang group) AT5G25370 62.9 3.8e-287 984.2
Cme11g02046 . 1 990 Phospholipase D Gene Family (Wang group) AT3G16785 73.3 0.0e+00 1459.1
Cme05g01583 . 22 988 Phospholipase D Gene Family (Wang group) AT3G16785 62.1 0.0e+00 1203.0
Cme05g01583 . 35 1109 Phospholipase D Gene Family (Wang group) AT3G05630 63.0 0.0e+00 1349.0
Cme11g02046 . 40 1113 Phospholipase D Gene Family (Wang group) AT3G05630 61.5 0.0e+00 1327.4
Cme01g02610 . 33 844 Phospholipase D Gene Family (Wang group) AT3G15730 79.0 0.0e+00 1380.9
Cme07g02065 . 1 797 Phospholipase D Gene Family (Wang group) AT3G15730 74.0 0.0e+00 1306.6
Cme03g01617 . 1220 2032 Phospholipase D Gene Family (Wang group) AT3G15730 63.8 0.0e+00 1097.8
Cme01g02610 . 28 844 Phospholipase D Gene Family (Wang group) AT1G52570 78.4 0.0e+00 1373.6
Cme07g02065 . 1 797 Phospholipase D Gene Family (Wang group) AT1G52570 74.0 0.0e+00 1299.6
Cme03g01617 . 1220 2032 Phospholipase D Gene Family (Wang group) AT1G52570 63.2 0.0e+00 1101.3
Cme03g01617 . 1305 2031 Phospholipase D Gene Family (Wang group) AT5G25370 66.8 1.7e-300 1028.5
Cme07g02065 . 72 797 Phospholipase D Gene Family (Wang group) AT5G25370 62.9 3.4e-288 987.6
Cme01g02610 . 119 844 Phospholipase D Gene Family (Wang group) AT5G25370 62.9 3.8e-287 984.2
Cme04g01195 . 31 761 Phospholipase D Gene Family (Wang group) AT1G55180 60.1 1.2e-269 926.0
Cme11g02535 . 128 1103 Phospholipase D Gene Family (Wang group) AT2G42010 71.4 0.0e+00 1438.7
Cme06g02664 . 14 851 Phospholipase D Gene Family (Wang group) AT2G42010 68.6 0.0e+00 1243.8
Cme03g01540 . 4 846 Phospholipase D Gene Family (Wang group) AT2G42010 51.8 1.6e-262 902.9
Cme08g00969 . 4 849 Phospholipase D Gene Family (Wang group) AT2G42010 51.9 1.6e-262 902.9
Cme11g02535 . 337 1103 Phospholipase D Gene Family (Wang group) AT4G00240 78.4 0.0e+00 1260.7
Cme06g02664 . 83 851 Phospholipase D Gene Family (Wang group) AT4G00240 69.0 0.0e+00 1131.3
Cme08g00969 . 71 849 Phospholipase D Gene Family (Wang group) AT4G00240 54.4 8.2e-253 870.2
Cme03g01540 . 65 846 Phospholipase D Gene Family (Wang group) AT4G00240 54.3 1.7e-250 862.4
Cme11g02535 . 257 1103 Phospholipase D Gene Family (Wang group) AT4G11850 68.7 0.0e+00 1211.4
Cme06g02664 . 7 851 Phospholipase D Gene Family (Wang group) AT4G11850 68.3 0.0e+00 1203.0
Cme08g00969 . 4 849 Phospholipase D Gene Family (Wang group) AT4G11850 51.3 5.7e-255 877.5
Cme03g01540 . 13 846 Phospholipase D Gene Family (Wang group) AT4G11850 50.2 6.3e-246 847.4
Cme11g02535 . 275 888 Phospholipase D Gene Family (Wang group) AT4G11830 67.0 5.0e-248 854.0
Cme06g02664 . 12 637 Phospholipase D Gene Family (Wang group) AT4G11830 64.9 2.1e-246 848.6
Cme11g02535 . 257 1103 Phospholipase D Gene Family (Wang group) AT4G11840 64.5 0.0e+00 1146.0
Cme06g02664 . 7 851 Phospholipase D Gene Family (Wang group) AT4G11840 65.4 0.0e+00 1139.4
Cme08g00969 . 4 846 Phospholipase D Gene Family (Wang group) AT4G11840 51.0 2.0e-249 859.0
Cme08g00969 . 1 689 Phospholipase D Gene Family (Wang group) AT4G35790 70.9 3.6e-300 1027.3
Cme03g01540 . 7 675 Phospholipase D Gene Family (Wang group) AT4G35790 64.1 4.3e-269 924.1
Cme11g02535 . 282 932 Phospholipase D Gene Family (Wang group) AT4G35790 50.9 9.8e-197 683.7
Cme11g02046 . 1 990 Phospholipase D Gene Family (Wang group) AT3G16785 73.3 0.0e+00 1459.1
Cme05g01583 . 22 988 Phospholipase D Gene Family (Wang group) AT3G16785 62.1 0.0e+00 1203.0
Cme05g01583 . 35 1109 Phospholipase D Gene Family (Wang group) AT3G05630 63.0 0.0e+00 1349.0
Cme11g02046 . 40 1113 Phospholipase D Gene Family (Wang group) AT3G05630 61.5 0.0e+00 1327.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000683 2 9 4 3 3 3 2 2 3 3 3 3 3 2 3 3 3 5 3 2 3 3 3 3 2 3 3 4 6 4 98