Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g02065 ATGGCACATATTCTGCTTCATGGCACCCTTCATGTCACCATCTATGAAGTTGATAAGCTTCACTCCGGTGGTCGCAATTTCTTGAAACAGTTGGTTGAAAACGTAGAGGAAGCAGTTGGGTTTGGGAGAGGAATAACGAGGCTATATGCAACCATTGATCTTGAGAAAGCCAGAGTTGGAAGAACAAGAAGGCTTGAAAGAGAACATTCAAATCCAAAATGGTACGAAACTTTCCATATCTACTGTGCTCATATGGCTTCCAACATCATCTTCACTGTCAAAGACGACAACCCAATTGGCGCAACCTTAATCGGCAGAGCTTATTTACCTGTTCGTGAGATCATCCGTGGTGATGAAGTTGACAAATGGGTTCCAATCTTAGATGAACAAAAGAAACCCATTCGTGGGGAACCCAAAATTCACGTCAAGTTACAGTTCTTTGATGTCACTAAGGATCAAAACTGGGGTCGTGGCATCAAAAGTCCCAAGTTTCCTGGTGTTCCCTACACTTACTTCTCTCAAAGACGTGGTTGTAAGGTAACTCTGTATCAAGATGCTCATGTTCCTGATAACTTTATCCCTAAAATCCCTCTTGCTGGGGGGAAGTTTTATGAGCCTCATAGATGTTGGGAAGATGTTTTTGATGCGATTATGAATGCTAAACATTTGATTTATATTTCTGGATGGTCTGTTTATACTGAGATTTCTTTGGTGAGAGATAAAAGAAGGCCAAAGCCTGGTGGAGATATAATGCTCGGTGAATTGCTTAAGAAAAAAGCTGGAGAAGGTGTTACAGTTCTTTTGCTTATTTGGAATGATACGACTTCCGTTCCTTTTTTCAAGGAGGAGGGGTTAATGGCAACTCATGATGAAGATACTGCTAAGTTCTTTGCTAATACTGATGTTCATTGTGTTTTGTGTCCTCGTAATCCTGATGATGGGGCTAATGTTATTCAGGATATTGCTGTTGGGACAATGTTCACTCATCATCAGAAGATTGTTGTGGTGGATAGTGCTTTGCCAAATGGGGATCCAAGTAAAAGGAGAATTGTTAGTTTTGTTGGTGGGCTTGATCTTTGTGATGGTAGGACTTTGGATTCTGCTCATCATGATGATTTCCATCAGCCAAATTTTGCGGGCACTTCCATTAACAAAGGTGGTCCTAGAGAGCCGTGGCACGATATCCATTCCCGCCTCGAAGGACCTGTTGCGTGGGATGTTTTGCACAATTTTGAACAGAGATGGAGGAAGCAAGGTGGGAAGGATTTGCTTGTGAAGTTGAGGGATTTAGATCAGATCTTCATCACTCCATCACCTGTCACCTTCCCGGACGACTTTGATAGTTGGAATGTTCAAGTTTTCAGGTCTATCGATGGTGGGGCAGCTTTTGGTTTCCCCGACTCGCCTGAAGAAGCAGCAAAAGCTGGATTGGTAAGTGGAAAGGACAACACCATTGATCGAAGTATTCAAGATGCTTACATTAATGCTATTAGAAGAGCAAAGAATTTCATATACATTGAGAATCAGTATTTCCTTGGAAGCTCATTTGAATGGAGAGGTGATGATGTGAAGCCTGAGGTAATTAACGCCCTGCATCTAATTCCAAAGGAACTTTCTCTTAAGATTATGAGTAAGATTGAAGCAAGAGAAAGGTTCACAGTGTACATTCTTGTTCCAATGTGGCCTGAAGGATTTCCTGAAGGGGGAACAGTTCAGGCAATATTAGATTGGCAAAGGAGAACAATGGAAATGATGTATAAAGATATAGTTCTAGCTCTTAGAGCTAATGGGGTTGAAGAAGATCCTAGAAACTATCTGACATTCTTTTGTGTCGGGAATCGTGAAGTTAAAAAGCCTGGAGAATATGAACCATCAGAATCACCTGATGAAAATTCTGATTACCTTAGAGCCCAGCAATCTAGGCGCTTCATGATTTATGTTCATTCCAAGATGATGATTGTTGATGATGAATACATAATAGTGGGATCAGCCAACATCAACCAAAGATCAATGGATGGTGCAAGGGACTCAGAGATAGCAATGGGAGGTTACCAACCATATCATTTGTCAGCTAGAGAGCCAGCAAGAGGCCAAATCCATGGCTTCCGTTTGGCATTGTGGTATGAACATTTAGGATTGCTTCATCAATCCTTCCTCTTCCCAGAAAGTATTGAATGTGTTAAAACAGTAAACCAACTTGCTGATAAATATTGGGATCTATACTCGAGTGAGACCTTTGATCGTGACCTTCCTGGCCACTTGCTTCGCTACCCCATTGCGGTCTCCGCTGACGGTCAAGTTACCGAGCTTCCTGGGTTCCAGTTCTTCCCTGATACTAAGGCGCGAGTTCTAGGTAACAAATCTAATTATATCCCTCCAATCCTCACTACTTGA 2394 41.94 MAHILLHGTLHVTIYEVDKLHSGGRNFLKQLVENVEEAVGFGRGITRLYATIDLEKARVGRTRRLEREHSNPKWYETFHIYCAHMASNIIFTVKDDNPIGATLIGRAYLPVREIIRGDEVDKWVPILDEQKKPIRGEPKIHVKLQFFDVTKDQNWGRGIKSPKFPGVPYTYFSQRRGCKVTLYQDAHVPDNFIPKIPLAGGKFYEPHRCWEDVFDAIMNAKHLIYISGWSVYTEISLVRDKRRPKPGGDIMLGELLKKKAGEGVTVLLLIWNDTTSVPFFKEEGLMATHDEDTAKFFANTDVHCVLCPRNPDDGANVIQDIAVGTMFTHHQKIVVVDSALPNGDPSKRRIVSFVGGLDLCDGRTLDSAHHDDFHQPNFAGTSINKGGPREPWHDIHSRLEGPVAWDVLHNFEQRWRKQGGKDLLVKLRDLDQIFITPSPVTFPDDFDSWNVQVFRSIDGGAAFGFPDSPEEAAKAGLVSGKDNTIDRSIQDAYINAIRRAKNFIYIENQYFLGSSFEWRGDDVKPEVINALHLIPKELSLKIMSKIEARERFTVYILVPMWPEGFPEGGTVQAILDWQRRTMEMMYKDIVLALRANGVEEDPRNYLTFFCVGNREVKKPGEYEPSESPDENSDYLRAQQSRRFMIYVHSKMMIVDDEYIIVGSANINQRSMDGARDSEIAMGGYQPYHLSAREPARGQIHGFRLALWYEHLGLLHQSFLFPESIECVKTVNQLADKYWDLYSSETFDRDLPGHLLRYPIAVSADGQVTELPGFQFFPDTKARVLGNKSNYIPPILTT 797
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 25517572 25522646 - MELO3C017887.2.1 Cme07g02065 334081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g02065 797 ProSiteProfiles C2 domain profile. 1 124 IPR000008 -
Cme07g02065 797 PANTHER PHOSPHOLIPASE D 2 797 IPR015679 -
Cme07g02065 797 PANTHER PHOSPHOLIPASE D 2 797 - -
Cme07g02065 797 Pfam C2 domain 8 126 IPR000008 -
Cme07g02065 797 Pfam Phospholipase D C terminal 716 787 IPR024632 -
Cme07g02065 797 Gene3D Endonuclease Chain A 200 431 - -
Cme07g02065 797 SMART C2_3c 9 123 IPR000008 -
Cme07g02065 797 Gene3D C2 domain 6 156 IPR035892 -
Cme07g02065 797 SUPERFAMILY Phospholipase D/nuclease 489 727 - -
Cme07g02065 797 CDD C2_plant_PLD 2 147 - -
Cme07g02065 797 PIRSF PLD_plant 1 797 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Cme07g02065 797 SMART pld_4 643 670 IPR001736 GO:0003824
Cme07g02065 797 SMART pld_4 325 363 IPR001736 GO:0003824
Cme07g02065 797 SUPERFAMILY Phospholipase D/nuclease 150 425 - -
Cme07g02065 797 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 325 363 IPR001736 GO:0003824
Cme07g02065 797 Pfam Phospholipase D Active site motif 325 363 IPR001736 GO:0003824
Cme07g02065 797 Pfam Phospholipase D Active site motif 644 670 IPR001736 GO:0003824
Cme07g02065 797 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 643 670 IPR001736 GO:0003824
Cme07g02065 797 Gene3D Endonuclease Chain A 461 684 - -
Cme07g02065 797 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 149 IPR035892 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01617 Cme-Chr3:25062581 Cme07g02065 Cme-Chr7:25517572 0 dispersed
Cme04g01195 Cme-Chr4:16327414 Cme07g02065 Cme-Chr7:25517572 0 dispersed
Cme07g02065 Cme-Chr7:25517572 Cme11g02535 Cme-Chr11:31792866 0 dispersed
Cme11g02046 Cme-Chr11:28223054 Cme07g02065 Cme-Chr7:25517572 1.37E-12 transposed
Cme01g02610 Cme-Chr1:33760704 Cme07g02065 Cme-Chr7:25517572 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g02065 K01115 - csv:101215246 1614.74