Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g02066 ATGGCAAAACAACAAAAGAAATTTAGAGGAGTGAGACAACGGCGATGGGGCTCATGGGTCTCCGAAATTCGTCATCCTCTTCTGAAGAGAAGGGTTTGGTTGGGAACGTTTGAGACGGCCGAAGATGCCGCTCGAGCCTACGATGAGGCTGCCGTTCTCATGAGCGGTCGAACTGCAAAAACAAACTTTCCATTGTCGACTGTCATGGTCAGGAACGAATCTAGAAATTTTTCTTCATTTTCGTCATTATCGACAATTCTCAACTCTAAACTTCGCAAGGGTTATTGGAAATCTCTTCCTCCTTTTTTGACTTGCCTTCGTCTCGACACCGAGAATTGTCGCATTGGCGTTTGGCAGAGGCGTACAGGACGCTATCGAGTGGTCGACTCGAACTGGTTGATGATGGTGGAGCTTGATGAGAAGAAGAACGACGACGGTTACCAAGTAACAACAGATGAGTTGTTGGAAAATGGTGTGGAAGATGATCATCAAGTGAGAGTTTCAGACGATGGAGCAGGAAGTTTAGACGAGGAAGAAAGAGCTGCTCTGCAAATGATTGAAGAACTTTTAAATAAGATATAG 582 45.19 MAKQQKKFRGVRQRRWGSWVSEIRHPLLKRRVWLGTFETAEDAARAYDEAAVLMSGRTAKTNFPLSTVMVRNESRNFSSFSSLSTILNSKLRKGYWKSLPPFLTCLRLDTENCRIGVWQRRTGRYRVVDSNWLMMVELDEKKNDDGYQVTTDELLENGVEDDHQVRVSDDGAGSLDEEERAALQMIEELLNKI 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 25529775 25530610 + MELO3C017888.2.1 Cme07g02066 334082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g02066 193 Pfam AP2 domain 7 51 IPR001471 GO:0003700|GO:0006355
Cme07g02066 193 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Cme07g02066 193 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Cme07g02066 193 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Cme07g02066 193 PANTHER ETHYLENE RESPONSE FACTOR 1 192 - -
Cme07g02066 193 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Cme07g02066 193 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 192 - -
Cme07g02066 193 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Cme07g02066 193 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Cme07g02066 193 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00103 Cme-Chr7:640263 Cme07g02066 Cme-Chr7:25529775 6.02E-37 dispersed
Cme07g02041 Cme-Chr7:25368178 Cme07g02066 Cme-Chr7:25529775 2.13E-27 dispersed
Cme07g02066 Cme-Chr7:25529775 Cme05g00324 Cme-Chr5:2379675 3.47E-23 dispersed
Cme02g01203 Cme-Chr2:17354064 Cme07g02066 Cme-Chr7:25529775 4.25E-60 wgd
Cme05g01917 Cme-Chr5:27852221 Cme07g02066 Cme-Chr7:25529775 1.86E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41706 PF00847 AP2 4.90E-12 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g02066 - - csv:101211468 303.523