Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g02176 ATGAAGTTCATGAAACTTGGATCAAAACCTGATTGTTTTCAGACTGATGGGACCAATGTTAGGTATGTTGTCAGTGAATTAGCTACGGACATCACTGTTATCGTTGGGGATGTCAAGTTTTACCTCCACAAGTTTCCCCTTTTGTCAAAGAGTGCTCACTTGCAGAAGTTGGTCACTGGGGAGCACAATGATGAAATATACATTCCAGAGATCCCAGGCGGTTCTGCGGCATTTGAGATATGTGCCAAATTCTGTTACGGCATGACTGTTACTCTTAATGCTTATAATGTAGTTGCAGCTCGTTGTGCTGCTGAATACCTAGGAATGCATGAGACAATAGAAAAGGGAAACCTAACCTACAAAATTGATGTTTTCCTTAGTTCGAGTATCTTTCGTAGCTGGAAGGATTCAATCATTGTTCTACAGTCTACAAAAGCACTAATGCCATTATCTGAGGAACTGAAATTAGTTAGCAATTGCTTAGAATCTATTGCTGTGAAGGCCTCTGCTGATATTTCTAAAGTTGACTGGTCTTACACATATAACCGCAAGAAACTACCCGAGGAAAATGGGAACAATCCCAACTGGAATGGTGTCAGGAATCGTAGTGTGCCGAAAGACTGGTGGGTTGAGGATCTTTGTGAGCTAGAAATTGATGTATATAAGCGTGTCATAGTGAGTATAAAAAACAAAGGAATAGTCCCTAACGATGTGATTGGAGAAGCCTTGAAGGCTTATGCTTACCGCTATCTTCCAGGCTTTAGCAAAGGTGTGCTTCAATGTGGGGATCCGCTGAAGTATCAGTCGGCAGTGTCCACAATCGTCTGGCTGTTACCTGCTGAGAAAGGCAGTGTTTCCAGTAGTTTCTTGTCCAAATTGCTGAAAGCTTCCATTTTCCTAGCTTTTGGAGACGAGACAAAAGACGAGCTTGTTCGACAAATGGGACAGCAGCTAGAGGAGGCTTCAGTGAGTGATCTCTTGATCCGATCACCAGAAGGTGAAGCTATGACCTATGATGTTAATGCTGTACAGAAAATGGTGGAGGTGTTTCTGTTGCAAGATCATAATAGCGAGATCGAGTCACTTGAAGAGGGAAATGAGATCCAGGAGCCAAGAGGGCCAGGGATTTTGTCTGACGCTACTAAGTTAATGGTGGCAAAATTGATCGATGGTTACCTTGCCGAGGTTGCAAAGGATCCCAACCTACCATCTGTAAAGTTCATTGATCTTGCAGAAATGGTATCTGGCATCGCTCGGCCTTCACATGACGGGCTCTATCGAGCCATAGACATGTATCTGAAGGAACATCCAGGGATCGGCAAGAGCGACAAGAAGAGAATCTGCAAACTGATAGACTGCAAGAAACTATCTGCTGATGCATGCATTCATGCTGTACAAAATGAACGGCTTCCTCTACGTATGGTTGTGCAGGTATTATTTTTTGAGCAAGTCAGGGCCTCAGCATCATCTGGCTGCAGCACTCCCGACCTACCTAAAGCCATCAAGGATCTAACGAGTGGATCTCACAGCAGCTCAAGATCAGCCACGACGAACCCTGAAGAAGACTGGGATGCAGTCGCCATGGCTGAGGAGCTGAAGGCCCTCAAAGGGGAGCTAGCTTCCTTGAGGCTTGCTAATGGTAGAGGAAGTAGTGAAAGAAATGGAGATGGTAAAAATGGAATTGACAAAGCAGCTCTTAGTAAAATGAAAGGACTGCTCAAGTCAAAGAAGCTTTTCACAAAGCTATGGTCAAGCAAAGGAGGAGGATACGGCGAAAACAGCGGGTCAGATTCATCGGAGAGCCTTGGTTCTGCTAATCAGGAGGAAGCTAAGTCCACACCTTCAAGGAACAGAAGGCATTCAGTTTCTTAG 1872 44.55 MKFMKLGSKPDCFQTDGTNVRYVVSELATDITVIVGDVKFYLHKFPLLSKSAHLQKLVTGEHNDEIYIPEIPGGSAAFEICAKFCYGMTVTLNAYNVVAARCAAEYLGMHETIEKGNLTYKIDVFLSSSIFRSWKDSIIVLQSTKALMPLSEELKLVSNCLESIAVKASADISKVDWSYTYNRKKLPEENGNNPNWNGVRNRSVPKDWWVEDLCELEIDVYKRVIVSIKNKGIVPNDVIGEALKAYAYRYLPGFSKGVLQCGDPLKYQSAVSTIVWLLPAEKGSVSSSFLSKLLKASIFLAFGDETKDELVRQMGQQLEEASVSDLLIRSPEGEAMTYDVNAVQKMVEVFLLQDHNSEIESLEEGNEIQEPRGPGILSDATKLMVAKLIDGYLAEVAKDPNLPSVKFIDLAEMVSGIARPSHDGLYRAIDMYLKEHPGIGKSDKKRICKLIDCKKLSADACIHAVQNERLPLRMVVQVLFFEQVRASASSGCSTPDLPKAIKDLTSGSHSSSRSATTNPEEDWDAVAMAEELKALKGELASLRLANGRGSSERNGDGKNGIDKAALSKMKGLLKSKKLFTKLWSSKGGGYGENSGSDSSESLGSANQEEAKSTPSRNRRHSVS 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26126847 26132244 - MELO3C017994.2.1 Cme07g02176 334192

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g02176 623 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN NPY2 1 620 IPR029960 GO:0009958
Cme07g02176 623 MobiDBLite consensus disorder prediction 504 519 - -
Cme07g02176 623 ProSiteProfiles NPH3 domain profile. 207 485 IPR027356 -
Cme07g02176 623 SUPERFAMILY POZ domain 22 114 IPR011333 -
Cme07g02176 623 MobiDBLite consensus disorder prediction 586 623 - -
Cme07g02176 623 Coils Coil 525 545 - -
Cme07g02176 623 Gene3D Potassium Channel Kv1.1; Chain A 21 123 IPR011333 -
Cme07g02176 623 Pfam NPH3 family 207 461 IPR027356 -
Cme07g02176 623 PANTHER OS12G0117600 PROTEIN 1 620 IPR043454 -
Cme07g02176 623 MobiDBLite consensus disorder prediction 587 611 - -
Cme07g02176 623 MobiDBLite consensus disorder prediction 498 521 - -
Cme07g02176 623 Pfam BTB/POZ domain 28 114 IPR000210 GO:0005515
Cme07g02176 623 ProSiteProfiles BTB domain profile. 29 94 IPR000210 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g02176 - - - csv:101210637 1153.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g02176 Cme-Chr7:26126847 Cme10g00576 Cme-Chr10:3695858 1.14E-138 dispersed
Cme01g00534 Cme-Chr1:4011541 Cme07g02176 Cme-Chr7:26126847 1.81E-66 transposed
Cme03g01576 Cme-Chr3:24776171 Cme07g02176 Cme-Chr7:26126847 0 transposed
Cme08g00650 Cme-Chr8:4257266 Cme07g02176 Cme-Chr7:26126847 7.27E-13 transposed
Cme08g01021 Cme-Chr8:6629394 Cme07g02176 Cme-Chr7:26126847 4.20E-130 transposed
Cme12g00837 Cme-Chr12:15087030 Cme07g02176 Cme-Chr7:26126847 3.69E-73 transposed
Cme07g02176 Cme-Chr7:26126847 Cme08g00640 Cme-Chr8:4157842 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g693 Blo02g00933 Blo03g00074 Bda06g01203 Bda08g00675 Bpe07g00274 . . Bma12g00281 . . . . . . . . . . . . . . . . Cla10g01000 Cam10g1022 Cec10g1053 Cco10g1018 Clacu10g1040 Cmu10g1824 Cre10g1197 . . Cone3ag1025 Cone10ag1040 . . . . . . . . . Bpe05g00475 . . . Cmo04g00485 Cmo16g00344 . . . . Cpe14g00271 Cpe01g00406 Bhi11g01141 . . . . Mch10g0450 . . . . . . . . Lsi03g01029 . . Cme07g02176
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001152 3 7 3 2 3 2 2 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 8 2 2 79