Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g02178 ATGGAAGCTGGTGCCATTTCAGAAAGAGAATGGATATCTCTTAGTGGAGCTTATACTGCTGAAGAATCTGATTTTATGGCTAATTTACTCAACAATTATTGTATTCCAAATGAGTTAAATTCAGATTTAACCTTGGAAATTCCATCTTCTTATTGGGCTTCTTCTAATGAACCTTCTTATTATTCTTCAGATGCTTCTGATTCTTCCAATATCTATGCCCTTTCACAACCCAATAACAATCTTCCTTATACTTTCAATGAATCTAACCCTCTTTGGATGCCTAATAATGGTGCTTCTTCCTTGTCCTTGGATTTTTCCGTCGAGGATGTCGGGAATGCCGATTGCTTGGACGATAATGGTTCGAATATTCGTAAAACAAGGCAATGCAGCAGGCTACAACAATCCCCTGCTGACTCTGTTGTCAATGGGAAGAGCTCACAACAGAAACGAAGAGCTGATGGTGTGATGGTGGAAGAAGCTATGAGGGATGATAAAGTTGGACCGGTTTCGGTTGAGAATGCCTCGAGGAAGCGACCTCAAAGTTTGCTTGATGTGAGGATTTATAATCTAAGATTTTCATTTGCACTAAAGACTGTTGAAAAGACGAAAAGGAGCGGGAGGGCACGGAAGACCTCGAAGATTGCTTCGGGTAGCTGCAATGAAGAGGATCAAATTGTTAGTCCAAATGGGCAATGCACAAGCAGTTTCAGCTCTGAAGATGATTGTAATGAGGCTCAGGAAATCAATGGTGGAATCACTTCTAGCTCAACCTCAAATGGAAAGCCAAGAGCCAGTAGAGGCTCAGCCACAGACCCTCAAAGCCTCTATGCAAGGAAAAGAAGAGAAAGAATCAATGAAAGGTTGAGAATCTTACAAAGCCTCGTCCCAAATGGTACAAAGGTTGATATCAGTACAATGCTTGAAGAAGCTGTTCAATATGTGAAGTTTTTGCAGCTTCAAATCAAGTTGTTGAGCTCAGATGATTTATGGATGTATGCACCAATTGCTTACAATGGAATGGACATTGGACTTAACTTGAAGTTGATGAAGCAAGACAATGCATCACAATAG 1071 40.71 MEAGAISEREWISLSGAYTAEESDFMANLLNNYCIPNELNSDLTLEIPSSYWASSNEPSYYSSDASDSSNIYALSQPNNNLPYTFNESNPLWMPNNGASSLSLDFSVEDVGNADCLDDNGSNIRKTRQCSRLQQSPADSVVNGKSSQQKRRADGVMVEEAMRDDKVGPVSVENASRKRPQSLLDVRIYNLRFSFALKTVEKTKRSGRARKTSKIASGSCNEEDQIVSPNGQCTSSFSSEDDCNEAQEINGGITSSSTSNGKPRASRGSATDPQSLYARKRRERINERLRILQSLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLKLMKQDNASQ 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26146937 26148604 + MELO3C017996.2.1 Cme07g02178 334194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g02178 356 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 268 317 IPR011598 GO:0046983
Cme07g02178 356 SMART finulus 274 323 IPR011598 GO:0046983
Cme07g02178 356 Pfam Helix-loop-helix DNA-binding domain 278 318 IPR011598 GO:0046983
Cme07g02178 356 MobiDBLite consensus disorder prediction 219 272 - -
Cme07g02178 356 Gene3D - 270 326 IPR036638 GO:0046983
Cme07g02178 356 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 3 353 - -
Cme07g02178 356 CDD bHLH_AtIND_like 269 331 - -
Cme07g02178 356 MobiDBLite consensus disorder prediction 130 149 - -
Cme07g02178 356 MobiDBLite consensus disorder prediction 219 275 - -
Cme07g02178 356 MobiDBLite consensus disorder prediction 130 155 - -
Cme07g02178 356 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 268 333 IPR036638 GO:0046983
Cme07g02178 356 PANTHER TRANSCRIPTION FACTOR BHLH84-LIKE 3 353 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme01g00118 Cme07g02178 CCT
Cme01g00118 Cme07g02178 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00397 Cme-Chr1:2849024 Cme07g02178 Cme-Chr7:26146937 2.95E-12 dispersed
Cme07g02178 Cme-Chr7:26146937 Cme09g00932 Cme-Chr9:13028405 4.61E-25 dispersed
Cme01g00118 Cme-Chr1:844087 Cme07g02178 Cme-Chr7:26146937 5.35E-65 wgd
Cme03g02098 Cme-Chr3:28290488 Cme07g02178 Cme-Chr7:26146937 7.20E-37 wgd
Cme07g00293 Cme-Chr7:1901015 Cme07g02178 Cme-Chr7:26146937 6.84E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41712 PF00010 HLH 7.50E-09 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g02178 - - csv:101217468 606.675