Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g02196 GGAAGTGACAAGAAAAACAAAGAAACAACTTTATTGTTGTTCTTCAGTTATTTTCTTCTCAAGATATCTTTGGGTTTTTCTTCTTCTTTTTTCTGTTTTCTGAAAGATATGAACATTTTCAAATTCTTTTTGCTTCCATTAATTTTGATATTTTCAGGGAAATTTATTATCACCATCCAAGGTGTCTCATATGATTATTCTGCCACAACTCAGTGTTTGGGAAAGCCAAGAAGGGTTCATGATGGGGGAGGGATGATAGTGAATTCAGAGTTCAACAATGGAATTGAAGGTTGGAAAGTGTTTGGAGGAGGAAAGATAAAGGAAGGATGGTTGAAGCATGGGAATCTCATCAACACCTTCATCGTAGCTCACAATAGAACTTCCCCAAGGGATACTTTTCATCAACTGCTTCATCTCCAACAGCATTACCTCTATACTTTCTCCGCTTGGGTTCGATTAAGTGAGGGAAATGCACCTGTGGCTGTTGTATTCAGAAATAGTAAAGGGGGTCAGATTCTTCATGGTGGTGAAACCATGGCCAAACATGGATGCTGGAGTTTGCTCAAAGGTGGCATCGTCTCTAATTTTACAGGCCAAGCGGAGGTTATTTTTGAGAGTACAAATACAGCAGTGGAAATCTGGGTTGATAATGTCTCACTACACCCATTTACAAAGGAGCAATGGCGATCCCACCAAGACGAAAGCATTAACAAGGTGAGGAAAAGCAAGGTGAGGTTGCAAATAACTCAACCAGACAACAGTAAACTAGCAGGTGCAAAAGTCCTCATTGACCAGAAAAAACCAAACTTCCCATTTGGGGCAGGAATGAACTATCACATTCTCCTTAGTAAAGAATACCAACAGTGGTTTGCATCAAGATTTGCCTATGCCACTTTCACCAATGAACTTAAGTGGTATAGCACTGAGAAAGTACAAGGCCAAGAGAACTACACCGTCCCTGATGCAATGCTTGAGTTTTCCCAACAACATGGTATTTCAGTAAGAGGACACAACATTTTCTGGGACAGTCCAAAATACCAGCCAGAATGGGTTAAGTCACTCTCCCCTCAAGATTTAAAGGAAGCAGCCGATAGAAGAATCAACTCCGTGGTTAAGAGATATTCTGGAAAGTTTATCCATTGGGACGTCGTGAACGAAAACGTGCACTTCAGATTCTTTGAGGACAAACTTGGTGAAAATGCCTCTGCAGAGTACTTCAACATAGCACATAAACTCGACAACAAAACACTTCTTTTCATGAATGAATACAATACCATGGAACACGATTACGAAAAGACATCAACCCCAGCTAACTTCAGAAAGAAACTCCTCGAAATCCTGTCGTATCCCGGGAATGAAAACATCCCAGCAGGAATCGGCTTGCAGGGAAACTTCGGCCCTGCTGCACCCAACTTGCCATACATGAGATCCGCTTTGGACCTTCTAGGATCAACAGGCTACCCCATATGGATCACAGAAGTGTTTGTTCAAGAAACTCCAAATCAGGCACAATACTACGAGGAAGTTCTGAGAGAAGGGTACTCACATCCTGCAGTGAAGGGGATAATCACATTTGCTGGCCCAGTATCCGCAGGTTTCACTACTCTACCGCTTGTGGATATGAATTTCAAGAACACACCAGCAGGAGATGTTGTGGATAAGCTTTTGGGTGAATGGAAATCTCCCAGCTTTGAAATTACAGCCGATGGTGAAGGTTTTGTTGATGCTTCGTTGTTCCATGGAGATTACAATGTGAGGGTGCAACACCCTCGAACCAATTCCTCCATTTCTGTGAGTATCAAAGTGACTGAAGAAGCCGCTCATCGAACCTTGAATCTCCAACTCCCTCATAACTGA 1857 42.22 GSDKKNKETTLLLFFSYFLLKISLGFSSSFFCFLKDMNIFKFFLLPLILIFSGKFIITIQGVSYDYSATTQCLGKPRRVHDGGGMIVNSEFNNGIEGWKVFGGGKIKEGWLKHGNLINTFIVAHNRTSPRDTFHQLLHLQQHYLYTFSAWVRLSEGNAPVAVVFRNSKGGQILHGGETMAKHGCWSLLKGGIVSNFTGQAEVIFESTNTAVEIWVDNVSLHPFTKEQWRSHQDESINKVRKSKVRLQITQPDNSKLAGAKVLIDQKKPNFPFGAGMNYHILLSKEYQQWFASRFAYATFTNELKWYSTEKVQGQENYTVPDAMLEFSQQHGISVRGHNIFWDSPKYQPEWVKSLSPQDLKEAADRRINSVVKRYSGKFIHWDVVNENVHFRFFEDKLGENASAEYFNIAHKLDNKTLLFMNEYNTMEHDYEKTSTPANFRKKLLEILSYPGNENIPAGIGLQGNFGPAAPNLPYMRSALDLLGSTGYPIWITEVFVQETPNQAQYYEEVLREGYSHPAVKGIITFAGPVSAGFTTLPLVDMNFKNTPAGDVVDKLLGEWKSPSFEITADGEGFVDASLFHGDYNVRVQHPRTNSSISVSIKVTEEAAHRTLNLQLPHN 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26222780 26226095 + MELO3C018013.2.1 Cme07g02196 334212

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g02196 618 SMART glyco_10 303 556 IPR001000 GO:0004553|GO:0005975
Cme07g02196 618 SUPERFAMILY Galactose-binding domain-like 84 222 IPR008979 -
Cme07g02196 618 SUPERFAMILY (Trans)glycosidases 256 561 IPR017853 -
Cme07g02196 618 Pfam Glycosyl hydrolase family 10 266 522 IPR001000 GO:0004553|GO:0005975
Cme07g02196 618 Gene3D - 75 223 - -
Cme07g02196 618 PANTHER HYDROLYZING O-GLYCOSYL COMPOUNDS, PUTATIVE-RELATED 69 615 - -
Cme07g02196 618 PANTHER GLYCOSYL HYDROLASE 69 615 IPR044846 GO:0004553|GO:0005975
Cme07g02196 618 Gene3D Glycosidases 259 565 - -
Cme07g02196 618 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 256 555 IPR001000 GO:0004553|GO:0005975
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g02196 - - - csv:101222433 1040.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g02196 Cme-Chr7:26222780 Cme11g00394 Cme-Chr11:3995123 8.91E-126 dispersed
Cme01g00123 Cme-Chr1:885116 Cme07g02196 Cme-Chr7:26222780 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g716 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00976 Cam10g0999 Cec10g1029 Cco10g0992 Clacu10g1020 Cmu10g1803 Cre10g1177 . . . . . . . . . . . . . . . . . Cmo04g00475 . . . . Car19g00407 . Cpe01g00397 . . . . . . . . . . . . . . Lsi03g01015 . . Cme07g02196
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002470 0 2 1 0 1 1 1 1 1 2 1 2 3 2 2 4 2 3 4 1 2 3 2 4 2 2 2 4 2 3 60