Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g02198 ATGTCGTCAATATTTAAAAAGGACAAGTGGAGAAATATGAGTGTCATGGCTAATGGCTGGGGATCTCGAGAGAAGGCCAGGTTGGCACTTAAGAGATTACATGCTCCTAGAAAAGACGAGAATGCTGTGGCTCCAAGTGTTGCTGCCCAAAGTGAAGACGAATTGGCAGAAGCCAAGTCTGTTTCCCTTTCCTTGGATATCAAGCAGATAACCGGTCCAAAGCGATCTAATGTAAGAAAGGAAGAGGAGGAGGAGGAAGAAGAAGAAGAAGAAAAAGAAGTAGAAAGAATAGAAAGGGATGCAAGATATGATTGCCATAGGTGGGAAAAAAGACTGGACAATCTTATAATTGAGGCCATTACTACGCTGAGGGAACCCGGTGGCTCTAATAAGACAAAGATTACCTCGTATATAGAGGATCAATACTGGGCACCTCCAGACTTCAAGAGGCTGTTATCATCAAAATTGAAGTTCTTAACGGCTAGTCGTAAACTGGTCAAGGTTAAACGAAAATATAGGCTTCCTTCTGTGGCGCCTTCAGAGAGAAGGAGCTCTATGTTATTGTTGGAAGACCAGCAAAGAGCTACTGTAAGAGCTGACAAGGATGAAATGTGTATTCTTGCGAAAGCTCAAATCGACCTCGAATTAGCCAAGATGAGAACCATGACTTCCCAAGAGGCAGCGGCAGCTGCTGCCCGAGCAGTTGCTGAAGCAGAAGCAGCAATTGCAGAAGCTGAAGAGGCAGCTAGGGAAGCCGAGGCAGCTGAGGCTGATGCAGAAGCTGCCCAATCATTTGCAGAAGCCGCAATGAAGACACTGAAAGGAAGAAATCTCCCGAAGATGATGATCCGGGTTTGA 858 45.45 MSSIFKKDKWRNMSVMANGWGSREKARLALKRLHAPRKDENAVAPSVAAQSEDELAEAKSVSLSLDIKQITGPKRSNVRKEEEEEEEEEEEKEVERIERDARYDCHRWEKRLDNLIIEAITTLREPGGSNKTKITSYIEDQYWAPPDFKRLLSSKLKFLTASRKLVKVKRKYRLPSVAPSERRSSMLLLEDQQRATVRADKDEMCILAKAQIDLELAKMRTMTSQEAAAAAARAVAEAEAAIAEAEEAAREAEAAEADAEAAQSFAEAAMKTLKGRNLPKMMIRV 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26234995 26240103 - MELO3C018014.2.1 Cme07g02198 334214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g02198 285 PANTHER TELOMERE REPEAT-BINDING FACTOR 1 7 282 - -
Cme07g02198 285 Coils Coil 75 100 - -
Cme07g02198 285 MobiDBLite consensus disorder prediction 73 96 - -
Cme07g02198 285 Gene3D - 109 184 IPR036388 -
Cme07g02198 285 Pfam linker histone H1 and H5 family 112 169 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cme07g02198 285 SUPERFAMILY Winged helix DNA-binding domain 111 181 IPR036390 -
Cme07g02198 285 SMART h15plus2 106 171 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cme07g02198 285 Coils Coil 228 265 - -
Cme07g02198 285 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 104 176 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cme07g02198 285 PANTHER SINGLE MYB HISTONE 4 7 282 IPR044597 GO:0003691
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01227 Cme-Chr4:17009275 Cme07g02198 Cme-Chr7:26234995 3.06E-10 dispersed
Cme01g01606 Cme-Chr1:21586552 Cme07g02198 Cme-Chr7:26234995 3.83E-08 transposed
Cme05g00435 Cme-Chr5:3859966 Cme07g02198 Cme-Chr7:26234995 1.14E-06 transposed
Cme05g01797 Cme-Chr5:26895354 Cme07g02198 Cme-Chr7:26234995 7.14E-08 transposed
Cme08g00912 Cme-Chr8:6015477 Cme07g02198 Cme-Chr7:26234995 2.18E-06 transposed
Cme07g02198 Cme-Chr7:26234995 Cme08g00656 Cme-Chr8:4284104 3.99E-41 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g02198 K09422 - csv:101218411 419.083