Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g02198 ATGTCGTCAATATTTAAAAAGGACAAGTGGAGAAATATGAGTGTCATGGCTAATGGCTGGGGATCTCGAGAGAAGGCCAGGTTGGCACTTAAGAGATTACATGCTCCTAGAAAAGACGAGAATGCTGTGGCTCCAAGTGTTGCTGCCCAAAGTGAAGACGAATTGGCAGAAGCCAAGTCTGTTTCCCTTTCCTTGGATATCAAGCAGATAACCGGTCCAAAGCGATCTAATGTAAGAAAGGAAGAGGAGGAGGAGGAAGAAGAAGAAGAAGAAAAAGAAGTAGAAAGAATAGAAAGGGATGCAAGATATGATTGCCATAGGTGGGAAAAAAGACTGGACAATCTTATAATTGAGGCCATTACTACGCTGAGGGAACCCGGTGGCTCTAATAAGACAAAGATTACCTCGTATATAGAGGATCAATACTGGGCACCTCCAGACTTCAAGAGGCTGTTATCATCAAAATTGAAGTTCTTAACGGCTAGTCGTAAACTGGTCAAGGTTAAACGAAAATATAGGCTTCCTTCTGTGGCGCCTTCAGAGAGAAGGAGCTCTATGTTATTGTTGGAAGACCAGCAAAGAGCTACTGTAAGAGCTGACAAGGATGAAATGTGTATTCTTGCGAAAGCTCAAATCGACCTCGAATTAGCCAAGATGAGAACCATGACTTCCCAAGAGGCAGCGGCAGCTGCTGCCCGAGCAGTTGCTGAAGCAGAAGCAGCAATTGCAGAAGCTGAAGAGGCAGCTAGGGAAGCCGAGGCAGCTGAGGCTGATGCAGAAGCTGCCCAATCATTTGCAGAAGCCGCAATGAAGACACTGAAAGGAAGAAATCTCCCGAAGATGATGATCCGGGTTTGA 858 45.45 MSSIFKKDKWRNMSVMANGWGSREKARLALKRLHAPRKDENAVAPSVAAQSEDELAEAKSVSLSLDIKQITGPKRSNVRKEEEEEEEEEEEKEVERIERDARYDCHRWEKRLDNLIIEAITTLREPGGSNKTKITSYIEDQYWAPPDFKRLLSSKLKFLTASRKLVKVKRKYRLPSVAPSERRSSMLLLEDQQRATVRADKDEMCILAKAQIDLELAKMRTMTSQEAAAAAARAVAEAEAAIAEAEEAAREAEAAEADAEAAQSFAEAAMKTLKGRNLPKMMIRV 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26234995 26240103 - MELO3C018014.2.1 Cme07g02198 334214

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g02198 285 PANTHER TELOMERE REPEAT-BINDING FACTOR 1 7 282 - -
Cme07g02198 285 Coils Coil 75 100 - -
Cme07g02198 285 MobiDBLite consensus disorder prediction 73 96 - -
Cme07g02198 285 Gene3D - 109 184 IPR036388 -
Cme07g02198 285 Pfam linker histone H1 and H5 family 112 169 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cme07g02198 285 SUPERFAMILY Winged helix DNA-binding domain 111 181 IPR036390 -
Cme07g02198 285 SMART h15plus2 106 171 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cme07g02198 285 Coils Coil 228 265 - -
Cme07g02198 285 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 104 176 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cme07g02198 285 PANTHER SINGLE MYB HISTONE 4 7 282 IPR044597 GO:0003691
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g02198 K09422 MYBP; transcription factor MYB, plant - csv:101218411 419.083
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01227 Cme-Chr4:17009275 Cme07g02198 Cme-Chr7:26234995 3.06E-10 dispersed
Cme01g01606 Cme-Chr1:21586552 Cme07g02198 Cme-Chr7:26234995 3.83E-08 transposed
Cme05g00435 Cme-Chr5:3859966 Cme07g02198 Cme-Chr7:26234995 1.14E-06 transposed
Cme05g01797 Cme-Chr5:26895354 Cme07g02198 Cme-Chr7:26234995 7.14E-08 transposed
Cme08g00912 Cme-Chr8:6015477 Cme07g02198 Cme-Chr7:26234995 2.18E-06 transposed
Cme07g02198 Cme-Chr7:26234995 Cme08g00656 Cme-Chr8:4284104 3.99E-41 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g722 . Blo03g00069 Bda06g01187 . Bpe07g00280 . . Bma12g00288 . . . . . . . . . . . . . . . . Cla10g00975 Cam10g0998 Cec10g1028 Cco10g0991 Clacu10g1019 Cmu10g1802 Cre10g1176 . . Cone8ag0167 Cone12ag0173 . . . . . . . . . . . . . Cmo04g00473 Cmo16g00332 . . . . Cpe14g00260 Cpe01g00396 Bhi11g01125 . . . . . . . . . . . . . Lsi03g01014 . . Cme07g02198
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme08g00656 . 1 245 Single Myb Histone (SMH) Gene Family AT1G49950 52.2 3.4e-61 232.3
Cme07g02198 . 2 284 Single Myb Histone (SMH) Gene Family AT1G49950 54.1 1.3e-49 193.7
Cme08g00656 . 1 245 Single Myb Histone (SMH) Gene Family AT5G67580 52.8 1.1e-64 243.8
Cme08g00656 . 1 245 Single Myb Histone (SMH) Gene Family AT3G49850 50.8 1.9e-56 216.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005794 2 4 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 39