Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g02213 ATGGCGGAGGTCAATGCTATGATGATTCGTGCTCGCTGTAATTTTATGGTGAGAAACCCTGTGTTGGATGTGAAGCGTTTGGGTTTCCGGATGCCGGTTATGGGTCACCGAACAGTTTGGTGTAATCGGAGGAGGATGAAGGGGAGAGTTGGAAATGGAGTGAAGGCGACAATGCAGGTTGATTTGGACGATGAGGAGAGGTTGAGAAGATTGGAGGGTTTAGAGGCAACGTTAGGGCTTGATATTGTAGCGGAGAGGGAACTGAAGGAGAAAGGGTTTTTAGGGATGAGGAAGACGAAGCTTGTATGTACTATTGGTCCAGCGTGTAGTGGGATTGAGGATTTGGAGAAGTTAGCGTTGGAAGGTATGAATATTGCGAGATTGAATATGTGTCACAACTCGAGGGAGTGGCATTGTGATATGATTAAGAAAATCAAGAAGTTAAATGAGGAGAAAGGATTCTGTATTTCGGTTATGATTGATATTGAAGGAAGTCGGATTCATGTGGTTGATCACGGAGCTCCTTCCTCTGTAAAAGTTGAGGATGGTTCGATCTGGTTGTTTACTGCTGAGAAGTTCGAAGGTTCTCGTCCATTCACTGTGCAAGCGAGCTATGAAGGTTTCTCTGAAGGTATCCGAGTGGGTGATTCAATTGTAATTGATGGGGGAATGGCAACCTTTGAAGTTACTGAAAAGATTGGGAATGATTTAAGCTGCAGGTGCACAGACCCAGGTTTATTTCTTCCCCGGGCGAAGTGTAGCTTTTGGAGAGATGGGAGGCTTGTTGTGAGAAATCACGAGTCTCCCACGTTGTCAAGTAAGGATTGGTCGGACATTGAATTTGGAATTTCAGAGGGCGTGGACTTCATTGCCCTTTCTTTTGTGAACAGTGCAGATCCTGTCAGACATCTAAAAAACTACCTTTTAACAAAATCAGCAAAATCCATAAGGGTATTGGCTAAGATTGAAAGCTTGGAGGCCCTTCAAAATCTGGAAGAAATTATAGAGGCCTCTGATGGAATCATGGTGGCTCGAGGGGACCTTGGGGTCGAAATTCCGCTCGAGCAGATACCGGCAGTGCAAGAGGAAATAACCAGAGTCTGTAGGGAACTGAACAAACCAGTGATCATAGCTTCTCAACTTCTTGAGTCCATGGTTGAATATCCTACCCCAACACGTGCTGAGGTTGCAGATGTTTCTGAAGCTGTCCGACAATATGCTGATGCATTGATGCTATCTGGGGAGTCTGCCATAGGATCATATGGACAGAAAGCACTTTCGGTTCTACAGATGGCCAGCAGCCGAATGGAATTATGGAGTCGTGAAGAAAATACGAAAAATTTCCTTCCCCAGCATCAACTTGGAGTATCATTGCATGATCGAATCGCAGAAGAAATTTGCAATTCTGCAGCTGAATTGGCTAACAGACTTTCAGTAGACGCCATATTTGTGCTCACAAATCAAGGGCATATGGCATCTCTCCTTTCCCGAAACCGCCCAGGGCCGCCAATATTTGCATTAACGGACGATGATAGCACAAGAATGGCTTTGAATCTACAATGGGGAGTGTTCCCTTTGCGAATTGACCTCTCAGAAGATATTGAAGCAAACATCTCGAGAGGGATCGAGGTTGTGAAATCAAAGGGATTGGTGAAACAGGGGGACTCTGTGCTTGTGGTCTCAGAGATCTCTCCAGCTCGAGCTGTATCAATGGCGTCCCAATCAATTCAGCTGAAAACCATAGTGTAG 1749 45.28 MAEVNAMMIRARCNFMVRNPVLDVKRLGFRMPVMGHRTVWCNRRRMKGRVGNGVKATMQVDLDDEERLRRLEGLEATLGLDIVAERELKEKGFLGMRKTKLVCTIGPACSGIEDLEKLALEGMNIARLNMCHNSREWHCDMIKKIKKLNEEKGFCISVMIDIEGSRIHVVDHGAPSSVKVEDGSIWLFTAEKFEGSRPFTVQASYEGFSEGIRVGDSIVIDGGMATFEVTEKIGNDLSCRCTDPGLFLPRAKCSFWRDGRLVVRNHESPTLSSKDWSDIEFGISEGVDFIALSFVNSADPVRHLKNYLLTKSAKSIRVLAKIESLEALQNLEEIIEASDGIMVARGDLGVEIPLEQIPAVQEEITRVCRELNKPVIIASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGSYGQKALSVLQMASSRMELWSREENTKNFLPQHQLGVSLHDRIAEEICNSAAELANRLSVDAIFVLTNQGHMASLLSRNRPGPPIFALTDDDSTRMALNLQWGVFPLRIDLSEDIEANISRGIEVVKSKGLVKQGDSVLVVSEISPARAVSMASQSIQLKTIV 582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26343709 26348662 - MELO3C018027.2.1 Cme07g02213 334229

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g02213 582 PRINTS Pyruvate kinase family signature 154 170 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cme07g02213 582 PRINTS Pyruvate kinase family signature 287 301 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cme07g02213 582 PRINTS Pyruvate kinase family signature 318 344 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cme07g02213 582 PRINTS Pyruvate kinase family signature 345 369 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cme07g02213 582 PRINTS Pyruvate kinase family signature 370 394 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cme07g02213 582 PRINTS Pyruvate kinase family signature 395 413 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cme07g02213 582 PRINTS Pyruvate kinase family signature 414 430 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cme07g02213 582 Gene3D - 99 430 IPR040442 -
Cme07g02213 582 Gene3D - 166 268 IPR015806 GO:0004743|GO:0006096
Cme07g02213 582 ProSitePatterns Pyruvate kinase active site signature. 316 328 IPR018209 GO:0004743|GO:0006096
Cme07g02213 582 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 91 437 IPR015813 GO:0003824
Cme07g02213 582 Pfam Pyruvate kinase, alpha/beta domain 464 564 IPR015795 -
Cme07g02213 582 SUPERFAMILY PK beta-barrel domain-like 167 254 IPR011037 -
Cme07g02213 582 PANTHER PYRUVATE KINASE 40 581 - -
Cme07g02213 582 Gene3D - 432 577 IPR036918 -
Cme07g02213 582 Pfam Pyruvate kinase, barrel domain 96 434 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cme07g02213 582 PANTHER PYRUVATE KINASE 40 581 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cme07g02213 582 TIGRFAM pyruv_kin: pyruvate kinase 97 568 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cme07g02213 582 SUPERFAMILY PK C-terminal domain-like 460 563 IPR036918 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g02213 K00873 PK, pyk; pyruvate kinase [EC:2.7.1.40] - csv:101220786 1093.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00500 Cme-Chr5:4628930 Cme07g02213 Cme-Chr7:26343709 0 dispersed
Cme06g01059 Cme-Chr6:7701305 Cme07g02213 Cme-Chr7:26343709 1.85E-100 dispersed
Cme07g02213 Cme-Chr7:26343709 Cme10g00765 Cme-Chr10:4937170 1.34E-64 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g773 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00959 Cam10g0982 Cec10g1013 . Clacu10g1004 Cmu10g1787 Cre10g1160 . . . . . . . . . . . . . . . . Sed13g0418 Cmo04g00460 Cmo16g00321 . . . . Cpe14g00251 Cpe01g00386 Bhi11g01099 Tan01g0602 Cmetu07g0067 . . Mch10g0406 . . . . . . . . Lsi03g01004 . . Cme07g02213
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012138 0 1 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 1 1 30