Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g02214 ATGGCGCTGCCATCCAACAGGTCGTCTTCTCCGTCCTTACCATCCGGAAGAACAAGCCCTACTTCAAGAAGTTCCGAAATCAGTAACCCCATCCGCCGGAGCTTCTCCGGTAACCCGTTTTCAAAGCAATCCATAGTTGCCAATCCCAGAGGCTTAAACCCTATCACTCCGGCGAATAGTCCCTCTGATTATCCACGAAGGAACTCAATGAACAGAGAAAATTCATTTACTTCACGGGACATCCCGGAGAAAGAAAATGGTAAAGATCAGAGTCCTAAACCCGTCCGAGTTCGTTCGCCAATAGTCGGAAAATCGTCGAAGCATTTTATGTCTCCTACAATTTCCGCTGCCTCCAAGATTGCAGTCTCTCCAAGGAAGAAGGTTCTGGGTGATCGGAACGAGCCAGCTCGGTCCTCTGTTTCATTTTCCGGAATGAAGAGCTCTTCACTCAACTCGGTGAATCGAAGTTTGGAGGCACCGGAGGCACTTGAATCCGATAGCAACTCTCAAATTCCTCCTGTTTCAAATTCAAAAGTAGCAAAGACAGTGAGATTTGGTGGTTTTGAAGTCATTTCTGATTCATTTGATGATTCGGAATCCACTTACAGATACGATTTGAACCCGGAAACGGTGGTAACAATGGCAGTCGAAACTGGTATGAAGTCTGAAAATGTTCAAGTTTCAAAATCCACCAATGCAGTAGCACCTTCCGAATCATCTAATTCTGAGTTTGAGGTAATCTCTGTCTCGAACAACGATTTAGACTCTCCTCCAGCCAAGAGTAATTTAACTGAAGAAGTGGATTGTGTCAATCTTGATCAAAGAATCAGTCCAGTTTCTTCTCCAACAATAGCACCTCTCGATGCTGATCCATCACTTCCCCCTTATGACCCAAAAACTAATTATCTATCTCCAAGGCCTCAGTTCCTCCATTACAGACCAAACCGAAGAATCAATCGATACGAACCAGATGGCAGACTTGAGGACAAGCTCCTTTCCTTTGCCAATGTTTCCGAGTCTGAATCTGTGGAGGAAACTGACTCTGAAGATTCATCAAAGGAACTTGACGAAGCTTCTTCCAACGGATCGCAGATGGAAGAAGAAGAAGCGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGATGGGATTAATGTTTCTGAACAATGCCCTACAGAAGTTCAAAAGTCATGGAAGGTGTCCTTGTCAAGGATATTCAAGATCAGCTCTTTGCTTTTGATTTTGTTTACTGCTTGTTTTTCTATTTATGTTGTGAATGTTCATGATCCGAGTATCTTCAAGAGGCCAAGCTCATTAACAATGGAAGATGCATCTGAAATTTACGAGCTGGCAAAAACGAATTTCAATGTGTTCGTCCAGAAACTTGAGGTTTGGAATGTGAATTCCATCTCTTTTATTTCTGATATGGTTTTCAATTTCAGAGGAGCGCTGCCATTGATTCATTATGAAAACCAGACCGAGTTCTTCAACATGAATGAGCAGTGTCTTGTATTATCTCATCAAACTGTGTGGGGAGAAGAAAACACGTTGAATGTAATGGAAGCCATGAAGGATAGAGAAACTGACATTTTTGAAGAACCTATTGAGATAGAAGAACGACAAGAAGAAGGAGAAATTGACATCTTTGAAGAACTTATTAACATAGAAAAGCGACAAGAAGAAGAAGAAATCGGCATTTTTGAAGAACCTGTTGAAAGAGAATCCGAGAAGGAAGAACAAGAACAGGAACAGCAAGTAGACTTGTCGCAAGAGATTGAAGCAATGAAGATGAGAGAAATTGGCATTGAAAATTCTGAAAAAGAATCTCAAAATGAAGAAGAGCTAGGAGAAGTATCATTTCAAGGAAGTGGAGTCAATGCCAATGAAGAAGAGAAGAATGGAGAGGTTTTTGAAGAACCATTAGAAGAAATCAACGAAGAGGCCTTGAAAAATTCAGCTTCTGATGAACTATGTGAAGAAGAAGAATACATCCAAGAGAAATCTGAGGATAATTTCAGATTTTCTTCATCAGATGATTTCAAGTTTCATGATCAAATTAAACAAGAAGCAGCAGCAGCAACAGGGGAAACAGAGGTAGCAAAGAACACAGAATTTCAATACCAATCACCTCCAGTTTCTTCTCCAGCTGAACGTCAACCTGACTTTGAACATGAAATTGGAGGCAGAACCATCGATGTCATCCGAACAGAAACCGGAATCTCTCCGGATTTTACACAAACCAAAGCTATTATAATATCTGCTATACTGCTGGGTTTATCTCTTGTAACTGCAGGACTGATTTATGGAAGAAAATCATGCTCAAAACCACCACCACCATCATCCATTGCTGAAGAGCAAGAGAAGGAGCAGCCTTTGATGAACACGAGTCGAGTGGAAGAAAAAGACGATGAAGAAGATGATATGGGTGGAGAATTTTCTATTTCTGAAACCAGTAGTTTCCAATACAGTAGCATGAGGGAAGGAGAAACAAAAGAAGACAAGAAAATGAATGAAGTTGAGAGCCATAGCCATGGAAGGAGGAAGATGAAGAAGAATTCAAGAAGAGAATCAATGGCTTCTTCTTCTCTAGATGAATATTCATTGTCCACTTCAGCTTCGCCATCTTATGGGAGTTTCACGACCTATGAGAAGATCCCAATCAAGCATGGTGACGAAGAGATTGTGACCCCGGTGAGACGTTCTAGTAGAATTAGAAAGCAACACAACAATAGTTGA 2733 41.46 MALPSNRSSSPSLPSGRTSPTSRSSEISNPIRRSFSGNPFSKQSIVANPRGLNPITPANSPSDYPRRNSMNRENSFTSRDIPEKENGKDQSPKPVRVRSPIVGKSSKHFMSPTISAASKIAVSPRKKVLGDRNEPARSSVSFSGMKSSSLNSVNRSLEAPEALESDSNSQIPPVSNSKVAKTVRFGGFEVISDSFDDSESTYRYDLNPETVVTMAVETGMKSENVQVSKSTNAVAPSESSNSEFEVISVSNNDLDSPPAKSNLTEEVDCVNLDQRISPVSSPTIAPLDADPSLPPYDPKTNYLSPRPQFLHYRPNRRINRYEPDGRLEDKLLSFANVSESESVEETDSEDSSKELDEASSNGSQMEEEEAEEEEEEEEEEDGINVSEQCPTEVQKSWKVSLSRIFKISSLLLILFTACFSIYVVNVHDPSIFKRPSSLTMEDASEIYELAKTNFNVFVQKLEVWNVNSISFISDMVFNFRGALPLIHYENQTEFFNMNEQCLVLSHQTVWGEENTLNVMEAMKDRETDIFEEPIEIEERQEEGEIDIFEELINIEKRQEEEEIGIFEEPVERESEKEEQEQEQQVDLSQEIEAMKMREIGIENSEKESQNEEELGEVSFQGSGVNANEEEKNGEVFEEPLEEINEEALKNSASDELCEEEEYIQEKSEDNFRFSSSDDFKFHDQIKQEAAAATGETEVAKNTEFQYQSPPVSSPAERQPDFEHEIGGRTIDVIRTETGISPDFTQTKAIIISAILLGLSLVTAGLIYGRKSCSKPPPPSSIAEEQEKEQPLMNTSRVEEKDDEEDDMGGEFSISETSSFQYSSMREGETKEDKKMNEVESHSHGRRKMKKNSRRESMASSSLDEYSLSTSASPSYGSFTTYEKIPIKHGDEEIVTPVRRSSRIRKQHNNS 910
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26349349 26353108 - MELO3C018028.2.1 Cme07g02214 334230

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g02214 910 MobiDBLite consensus disorder prediction 825 844 - -
Cme07g02214 910 Coils Coil 355 385 - -
Cme07g02214 910 MobiDBLite consensus disorder prediction 1 176 - -
Cme07g02214 910 MobiDBLite consensus disorder prediction 77 92 - -
Cme07g02214 910 MobiDBLite consensus disorder prediction 688 726 - -
Cme07g02214 910 MobiDBLite consensus disorder prediction 771 910 - -
Cme07g02214 910 MobiDBLite consensus disorder prediction 278 308 - -
Cme07g02214 910 PANTHER TRANSMEMBRANE PROTEIN 1 908 - -
Cme07g02214 910 MobiDBLite consensus disorder prediction 602 636 - -
Cme07g02214 910 MobiDBLite consensus disorder prediction 884 899 - -
Cme07g02214 910 MobiDBLite consensus disorder prediction 858 879 - -
Cme07g02214 910 MobiDBLite consensus disorder prediction 225 259 - -
Cme07g02214 910 PANTHER TRANSMEMBRANE PROTEIN 1 908 - -
Cme07g02214 910 MobiDBLite consensus disorder prediction 337 388 - -
Cme07g02214 910 MobiDBLite consensus disorder prediction 1 76 - -
Cme07g02214 910 MobiDBLite consensus disorder prediction 361 385 - -
Cme07g02214 910 MobiDBLite consensus disorder prediction 136 176 - -
Cme07g02214 910 MobiDBLite consensus disorder prediction 698 714 - -
Cme07g02214 910 MobiDBLite consensus disorder prediction 225 261 - -
Cme07g02214 910 Coils Coil 570 597 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g02214 - - - csv:101223143 1373.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01146 Cme-Chr4:15669319 Cme07g02214 Cme-Chr7:26349349 6.50E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g776 Blo02g00915 . . . . . . Bma12g00305 . . . . . . . . . . . . . . . . Cla10g00958 Cam10g0981 Cec10g1012 . Clacu10g1003 Cmu10g1786 Cre10g1159 . . Cone3ag1049 Cone10ag1065 . . . . . . . . . . . . Sed13g0417 Cmo04g00459 Cmo16g00320 . . . . Cpe14g00250 Cpe01g00385 Bhi11g01098 Tan01g0601 Cmetu07g1160 . Hepe07g0391 Mch10g0405 . . . . . . . . Lsi03g01003 . . Cme07g02214
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005958 3 1 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 1 1 1 37