Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g02215 ATGTCCCGTTCTCTCCTCCGAGCTTTTCCTTTCTCCAATATTCGCCCAAAGCCTCCTCAATTTCTCCCCATCCTCCACCACATTTCCCATCTCCGCCTTCCCCAATCCATTTCCACAACTCAGACACCTGTTTCCTCATTTTCCACTTCCGCCACTCCTCCTCCTTCCTCCGCCACCGAAACCCTTGTCCCCACTTCGAATTCTCACTCCCCTTTTAAAGACTCTCTTCAGTGGATCAATCGTACGGCGCTTTGTGGTGAATTGTCGGTTGATGATGTTGGGAAGCGGGTTCGGCTCTGTGGTTGGGTTGCTCTACATAGGGTTCATGGTGGTTTGACGTTTCTCAATCTTAGAGATCACAGTGGTATTGTTCAGGTGACTACGCTCCCCAACGAGTTTCCAGATGCTCATTCGGCTATTAACGATTTGCGGCTTGAGTATGTTGTTGCTGTGGAAGGAACTGTTCGGTCTCGGCCTGGGGATTCGGTTAATGTAAAAATGAAAACTGGTTTTATAGAGCCTGGCGTTGTGTTGGAAAGGTTTTCAGTTTTCTCGTTCATTGCATTATGCTCAAGCCTTCCCCCTACGATCTACTTGGCCATCTCCCGAGTAAACAACAATTTTAAACAAGATTTTGAAGTTATCAAGTACACAATATGCTCTTCTAGCATGGAACACTTCCTGGCTGTGTGGTGTTTATCTCAACTTGAAAGCACGAATTCCAAGGTTGTAGCAAACAGAGCCACTTGTTTCTGGAGAATTTTTGAAGGAGGGCATAGAGATTGGGTTGCTGCGGAGCATGTTCAAATATTAAATTCTGTTGGATCAAAGTTACCCTTTTTAGTTACAACGGCTGATGATGCAAAGGATTCTGCTAAAGAGGAAATTCGTCTGAGGTACCGGTACCTTGATCTACGAAGGAAGCAAATGAATTTTAACATAATGCTTCGTCATAAAGTAGTGAAGCTCATTCGAAGATATTTAGAGGATGTACATGGTTTTGTGGAGATTGAGACGCCAATACTTTCTAGATCTACTCCGGAAGGCGCTCGAGATTATCTGGTGCCGTCTAGAGTTCAGCCAGGAACATTTTTTGCTTTGCCTCAAAGTCCACAGCTGTTTAAGCAAATGTTGATGGTGTCTGGTTTTGATAAATATTATCAAATAGCAAGGTGTTTCCGAGATGAAGACTTAAGAGCTGACAGACAGCCTGAGTTTACGCAACTTGATATGGAATTATCATTTACAACTTTGGAAGACATGCTGAGACTCAATGAAGATTTGATTAGAAAGGTTTTCTGGGAAGTGAAAGGTGTTCAACTGCCAAATCCTTTCCCGAGGCTTACCTATGCTGAAGCAATGAGTCGATATGGATCAGATAGGCCAGATACAAGATTTGATCTTCAATTGAATGATGTATCTGATATTTTTGCAGATTCTCCATTTAAGGTTTTTGCAGACGCCTTGTCAAGCGGCGGAATCATCAAAGTACTGTGTGTGCCCTCTGGTGCTAAAAGGTATTCAAATACAGCTCTTAAAAAGGGTGACATTTATACAGAGGCGATGAAATCTGGTGCAAAAGGATTACCTTTTCTGAAAGTTACAGACGATGGTACTATTCCTTCTCTCCTCAAGATTTCCAATATGCTTAAAATGTCGATTGTTGAGATGGTGTCTGGGATATGTTCTGCCGGACCTGGTGATCTAGTCTTGTTTGCCGTGGGCCATCGAGTATCAGTTAATAAAACGCTAGATAGGCTTAGACTATATGTAGCTAATGAGCTGGGTTTAGTCGACCATTCTAGGCATTCAATTTTGTGGGTGACCGATTTTCCAATGTTTGAATGGAATGATCTAGAGCAACGACTCGAGGCTTTGCACCACCCTTTCACAGCTCCAAACCCTGAAGACGTTGGTGATCTGCCCTCTGCTCGTGCTTTAGCTTATGACATGGTTTACAATGGAGTAGAGATTGGTGGAGGCAGTTTGAGAATTCATAAACGTGAAGTTCAAGAAAAGGTTTTGGAGATTGTGGGAATCTCTCTTGAACAGGCAGAAGCGAAGTTTGGTTATTTATTGGAGGCACTAGACATGGGTGCCCCGCCTCATGGGGGCATTGCTTATGGAGTGGATAGATTGGTCATGTTATTAGCAGATGCAAATTCCATTAGGGATGTCATAGCTTTCCCTAAGACAACAACAGCACAATGTGCCCTCACAAGAGCTCCTTCAGAAGTGGATCCCCAACAACTCAAGGATTTATCATATCAGACCCAATAA 2280 43.38 MSRSLLRAFPFSNIRPKPPQFLPILHHISHLRLPQSISTTQTPVSSFSTSATPPPSSATETLVPTSNSHSPFKDSLQWINRTALCGELSVDDVGKRVRLCGWVALHRVHGGLTFLNLRDHSGIVQVTTLPNEFPDAHSAINDLRLEYVVAVEGTVRSRPGDSVNVKMKTGFIEPGVVLERFSVFSFIALCSSLPPTIYLAISRVNNNFKQDFEVIKYTICSSSMEHFLAVWCLSQLESTNSKVVANRATCFWRIFEGGHRDWVAAEHVQILNSVGSKLPFLVTTADDAKDSAKEEIRLRYRYLDLRRKQMNFNIMLRHKVVKLIRRYLEDVHGFVEIETPILSRSTPEGARDYLVPSRVQPGTFFALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELSFTTLEDMLRLNEDLIRKVFWEVKGVQLPNPFPRLTYAEAMSRYGSDRPDTRFDLQLNDVSDIFADSPFKVFADALSSGGIIKVLCVPSGAKRYSNTALKKGDIYTEAMKSGAKGLPFLKVTDDGTIPSLLKISNMLKMSIVEMVSGICSAGPGDLVLFAVGHRVSVNKTLDRLRLYVANELGLVDHSRHSILWVTDFPMFEWNDLEQRLEALHHPFTAPNPEDVGDLPSARALAYDMVYNGVEIGGGSLRIHKREVQEKVLEIVGISLEQAEAKFGYLLEALDMGAPPHGGIAYGVDRLVMLLADANSIRDVIAFPKTTTAQCALTRAPSEVDPQQLKDLSYQTQ 759
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26355376 26364572 + MELO3C018029.2.1 Cme07g02215 334231

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g02215 759 Gene3D - 73 185 IPR012340 -
Cme07g02215 759 SUPERFAMILY Nucleic acid-binding proteins 81 173 IPR012340 -
Cme07g02215 759 PANTHER ASPARTYL/LYSYL-TRNA SYNTHETASE 64 185 - -
Cme07g02215 759 SUPERFAMILY GAD domain-like 466 598 IPR004115 GO:0004812|GO:0005524|GO:0005737
Cme07g02215 759 Pfam GAD domain 485 584 IPR029351 -
Cme07g02215 759 Pfam OB-fold nucleic acid binding domain 97 166 IPR004365 GO:0003676
Cme07g02215 759 TIGRFAM aspS_bact: aspartate--tRNA ligase 263 757 IPR004524 GO:0005524|GO:0016874
Cme07g02215 759 CDD EcAspRS_like_N 81 310 - -
Cme07g02215 759 PRINTS Aspartyl-tRNA synthetase signature 693 707 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cme07g02215 759 PRINTS Aspartyl-tRNA synthetase signature 384 397 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cme07g02215 759 PRINTS Aspartyl-tRNA synthetase signature 649 665 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cme07g02215 759 PRINTS Aspartyl-tRNA synthetase signature 367 379 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cme07g02215 759 PANTHER ASPARTATE--TRNA LIGASE, MITOCHONDRIAL 263 757 IPR004524 GO:0005524|GO:0016874
Cme07g02215 759 PANTHER ASPARTATE--TRNA LIGASE, MITOCHONDRIAL 64 185 IPR004524 GO:0005524|GO:0016874
Cme07g02215 759 MobiDBLite consensus disorder prediction 41 66 - -
Cme07g02215 759 Hamap Aspartate--tRNA(Asp/Asn) ligase [aspS]. 80 759 IPR004524 GO:0005524|GO:0016874
Cme07g02215 759 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 316 730 IPR006195 -
Cme07g02215 759 Pfam tRNA synthetases class II (D, K and N) 294 733 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cme07g02215 759 PANTHER ASPARTYL/LYSYL-TRNA SYNTHETASE 263 757 - -
Cme07g02215 759 SUPERFAMILY Class II aaRS and biotin synthetases 294 732 IPR045864 -
Cme07g02215 759 Gene3D - 449 598 IPR004115 GO:0004812|GO:0005524|GO:0005737
Cme07g02215 759 CDD AspRS_core 314 733 - -
Cme07g02215 759 Gene3D Bira Bifunctional Protein; Domain 2 288 754 IPR045864 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g02215 K01876 DARS2, aspS; aspartyl-tRNA synthetase [EC:6.1.1.12] - csv:101202872 924.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01345 Cme-Chr5:22395103 Cme07g02215 Cme-Chr7:26355376 6.18E-14 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g777 . Blo03g00057 Bda06g01152 . Bpe07g00295 . . Bma12g00306 . . . . . . . . . . . . . . . . Cla10g00957 Cam10g0980 Cec10g1011 Cco10g0974 Clacu10g1002 Cmu10g1784 Cre10g1158 . . Cone3ag1050 Cone10ag1066 . . . . . . . . . . . . Sed07g1150 Cmo04g00458 Cmo16g00319 . . . . Cpe14g00249 Cpe01g00384 Bhi11g01096 Tan01g0600 Cmetu07g2217 . . Mch10g0404 . . . . . . . . Lsi03g01002 . . Cme07g02215
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009118 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34