Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g02216 ATGAGGAAGAGCAGAGGTAGGCAAAAGGTGGAGATGGTGAAGATGCCAAATGAAAGCAACCTTCAGGTCACCTTCTCCAAGCGTCGCTCCGGCCTCTTCAAGAAAGCTAGCGAGCTCTGCACCCTCTGTGGTGCCGAGATTGCCATCATTGTCTTCTCCCCTGGGAAGAAGGTCTTTTCCTTTGGCCACCCTTGCGTCGAGGCTCTCATCGAGCGCTTTGTCACACGAAATCCTCCACCCAGTTCTGGTACGCTGCAGCTTATCGAAGCTCACCGGAATGCTAATGTTCGAGAACTTAATGCACAACTTACTCAAGTCCTGAACCAACTAGAAATGGAGCGGAAGCGCGGCGAAGAGTTGAACAAACTACGCAAGGCAAGCCAGGCACAATGTTGGTGGGAGCTTCCCATAGAAGAAATGGAAATGCATCAACTAGAACAACTTAAAGCTTCGTTGGATGAGCTAAAGAAGAATGTGACTCAACAAGCTGATCGGATTTTGATTCAGACTTCTTCTAATGCCAATCCCCCCACGCAGTTGATCTTCCCGACTCAGATTCCGACTCCAACAACAACAAATGGCCCTAACCAGCAACCCGGCCTTTTCGTCGTGGATCCTAAGAACATCATCTCCCATCTTCCCTTCAACTATGGTTCCTATGGATCAAGAGGTTTCTTTTGA 681 48.9 MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSFGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEELNKLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQTSSNANPPTQLIFPTQIPTPTTTNGPNQQPGLFVVDPKNIISHLPFNYGSYGSRGFF 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26366715 26367831 + MELO3C018030.2.1 Cme07g02216 334232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g02216 226 CDD MADS_MEF2_like 6 73 IPR033896 GO:0000977|GO:0045944
Cme07g02216 226 Gene3D - 17 81 IPR036879 GO:0003677|GO:0046983
Cme07g02216 226 SMART madsneu2 5 64 IPR002100 GO:0003677|GO:0046983
Cme07g02216 226 Gene3D - 83 179 - -
Cme07g02216 226 SUPERFAMILY SRF-like 6 78 IPR036879 GO:0003677|GO:0046983
Cme07g02216 226 Coils Coil 138 165 - -
Cme07g02216 226 ProSiteProfiles MADS-box domain profile. 5 65 IPR002100 GO:0003677|GO:0046983
Cme07g02216 226 Coils Coil 93 120 - -
Cme07g02216 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 16 61 IPR002100 GO:0003677|GO:0046983
Cme07g02216 226 PRINTS MADS domain signature 7 27 IPR002100 GO:0003677|GO:0046983
Cme07g02216 226 PRINTS MADS domain signature 27 42 IPR002100 GO:0003677|GO:0046983
Cme07g02216 226 PRINTS MADS domain signature 42 63 IPR002100 GO:0003677|GO:0046983
Cme07g02216 226 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 5 177 - -
Cme07g02216 226 PANTHER MADS BOX PROTEIN 5 177 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g02216 Cme-Chr7:26366715 Cme12g00859 Cme-Chr12:15381605 3.72E-41 dispersed
Cme07g02216 Cme-Chr7:26366715 Cme08g00154 Cme-Chr8:1105670 7.51E-44 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41713 PF00319 SRF-TF 3.70E-24 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g02216 - - csv:101221957 417.157