Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g02221 ATGAGAACTCAAAGTCAAAACCCTCTAATGGCAATTTTCTTTGCCTCTTTCATGTTCCTCTTCTTCCTAACACATGCCCAAAACTCCCCTCAAGACTACATTGCCCTACACAACAAAGCTCGGGCCGCAGTCGGCGTCGGTCCCATGACATGGAACAGCACTCTCGCTGCCTACGCTGAAGCCTACGCCAACCAAAGGATAAAAGACTGCGCCTTGGTTCACTCTAAAGGACCATACGGTGAAAACATAGCTGTTGGCTACTACCCCGAGTTCACCGGTGCGGATGGCGTAAAGTTGTGGGTGGCAGAAAAGCGTTTATACGATTATGCATCGAACTCATGCAAGGGTGGCGACTGTGGACACTATACTCAGTTGGTGTGGCGAACCTCCGTGCGTCTTGGATGTGCAAGAGTGGCTTGTAAAGGAAAATCGCAGTTCGTTGTATGCAACTATGATCCTCCTGGCAACTATATAGGATTAAGACCCTATAATTCTTCAACGTAA 504 48.21 MRTQSQNPLMAIFFASFMFLFFLTHAQNSPQDYIALHNKARAAVGVGPMTWNSTLAAYAEAYANQRIKDCALVHSKGPYGENIAVGYYPEFTGADGVKLWVAEKRLYDYASNSCKGGDCGHYTQLVWRTSVRLGCARVACKGKSQFVVCNYDPPGNYIGLRPYNSST 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26387904 26388407 - MELO3C018034.2.1 Cme07g02221 334237

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g02221 167 PRINTS Venom allergen 5 signature 49 67 IPR002413 -
Cme07g02221 167 PRINTS Venom allergen 5 signature 94 109 IPR002413 -
Cme07g02221 167 PRINTS Venom allergen 5 signature 118 137 IPR002413 -
Cme07g02221 167 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 21 163 IPR001283 -
Cme07g02221 167 CDD CAP_PR-1 30 163 - -
Cme07g02221 167 ProSitePatterns CRISP family signature 1. 120 130 IPR018244 GO:0005576
Cme07g02221 167 ProSitePatterns CRISP family signature 2. 146 157 IPR018244 GO:0005576
Cme07g02221 167 PRINTS Allergen V5/Tpx-1 family signature 49 67 IPR001283 -
Cme07g02221 167 PRINTS Allergen V5/Tpx-1 family signature 96 109 IPR001283 -
Cme07g02221 167 PRINTS Allergen V5/Tpx-1 family signature 119 135 IPR001283 -
Cme07g02221 167 PRINTS Allergen V5/Tpx-1 family signature 146 159 IPR001283 -
Cme07g02221 167 Pfam Cysteine-rich secretory protein family 35 151 IPR014044 -
Cme07g02221 167 Gene3D CAP 23 166 IPR035940 -
Cme07g02221 167 PANTHER PATHOGENESIS-RELATED PROTEIN 1 21 163 - -
Cme07g02221 167 SUPERFAMILY PR-1-like 22 165 IPR035940 -
Cme07g02221 167 SMART SCP_3 28 159 IPR014044 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g02221 K13449 PR1; pathogenesis-related protein 1 - csv:116402142 301.597
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme01g00139 Cme07g02221 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00147 Cme-Chr1:1051651 Cme07g02221 Cme-Chr7:26387904 2.22E-58 dispersed
Cme01g00137 Cme-Chr1:1010602 Cme07g02221 Cme-Chr7:26387904 2.64E-58 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g792 . Blo03g00053 Bda06g01149 . Bpe07g00298 . Bma05g00636 Bma12g00310 Cmo19g00543 . . . . . . Cpe04g00336 Cpe15g00425 . . . . . . . Cla02g00705 Cam02g0738 Cec02g0752 Cco02g0778 Clacu02g0748 Cmu02g0742 Cre02g1056 . . . . Lsi03g00618 Csa07g00664 . Cme01g00139 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g00150 Cme07g02221
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001430 0 2 0 0 0 2 0 1 1 3 2 2 18 1 1 16 2 0 9 2 2 0 1 1 2 2 0 2 1 0 73