Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g02236 ATGGGAAGAGGGAAGATAGTAATAAGAAGAATAGACAATTCAACAAGCAGGCAAGTGACCTTTTCAAAGAGAAGAAGTGGTTTATTGAAAAAGGCTAGAGAGCTTTCAATCCTCTGTGATGCTGAAGTTGGTTTGATCATTTTTTCAAGCACTGGCAAACTCTATGATTATTCCAGTTCCAGCATAAGGTCGATTACTGATCGATACAACAAGATGAAAGAGGAGCAAAATCAGCTGATGAATTCGGTTTCAGAACTCCAGTTTTGGAAAAGAGAGGCAGCTGCTTTGAAGCAACAACTGCATTACTTGCAAGAATGTCACAGACAACTGATGGGTGAAGAACTATCTGGCCTGAGTGTCAAAGATCTACAAAATCTAGAAAGCCAATTGGAAATGAGTTTGAAGGGCGTTCGTGTGAAGAAGGAAAAGATTTTAAGTGATGAAATTACTGAACTAAAACAGAAGGGGAACCATATGCATCAAGAAAATGTGGAACTCTACAAAAAATTAGATTTGATTCGTAAGGAAAATGCAGAACTGCAAATGAAGGTAGAGATCCAAAACTTATGTTGA 573 37.87 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKARELSILCDAEVGLIIFSSTGKLYDYSSSSIRSITDRYNKMKEEQNQLMNSVSELQFWKREAAALKQQLHYLQECHRQLMGEELSGLSVKDLQNLESQLEMSLKGVRVKKEKILSDEITELKQKGNHMHQENVELYKKLDLIRKENAELQMKVEIQNLC 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26497289 26507994 - MELO3C018049.2.1 Cme07g02236 334252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g02236 190 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Cme07g02236 190 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 184 - -
Cme07g02236 190 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cme07g02236 190 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cme07g02236 190 Coils Coil 163 183 - -
Cme07g02236 190 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Cme07g02236 190 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cme07g02236 190 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Cme07g02236 190 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 184 - -
Cme07g02236 190 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cme07g02236 190 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cme07g02236 190 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cme07g02236 190 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cme07g02236 190 Coils Coil 62 99 - -
Cme07g02236 190 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cme07g02236 190 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g02236 Cme-Chr7:26497289 Cme08g00190 Cme-Chr8:1304027 8.01E-50 dispersed
Cme07g02236 Cme-Chr7:26497289 Cme07g02243 Cme-Chr7:26544560 5.93E-32 proximal
Cme04g01617 Cme-Chr4:23450761 Cme07g02236 Cme-Chr7:26497289 6.37E-32 transposed
Cme07g02236 Cme-Chr7:26497289 Cme08g00712 Cme-Chr8:4739672 1.76E-81 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41714 PF01486 K-box 6.40E-26 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g02236 K09264 - csv:101203098 349.747