Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme08g00004 | ATGCACTTCAACTTTTCGATCCCCCGTCCCTCACCAACCATTGCATTTCTTTTCAGTTTTCGCATCAATGGGAACTCTGGTGACCCTTACTACGAGGCAGAGGTAGAAGCGATGATGGGTGGCGAATCTAACACCATGTTCATTGATTTCGCTCACCTCATGGGCTCCAATAATCTTCTTAACATTGCAATCGCCGACGAATACCTGAGGTTTGAACCATACCTGAAAAACGCTTGTAAGCGATTCGTAATGGAGCAGAATCCTTCTTTCGTCGCTGACGATAACCCCTTCAAGGACATAAATGTTGCTTTCTGTAACATTCCTGTTTCTAGGAGGTTGAGAGAATTGACTACTGCAGAGATTGGGAAATTAGTATCCGTGACAGGAGTGGTGACGCGGACAAGCGAGGTCCGACCAGAGCTTCTACAGGGGACCTTCAAGTGCTTAGAATGTGGAAATGTCATAAAGAATGTCGAACAACAATTTAAGTACACCGAGCCAACAATATGTATGAACCCAACCTGTTCGAATAGAACAAAATGGGCATTACTTCGGCAAGAGAGTAAATTCGCTGATTGGCAGAGGGTGCGAATGCAAGAGACTTCAGAGGAGATTCCAGCTGGCTCTCTTCCACGATCTTTGGATGTTATTCTCCGCCATGAAATGGTTGAACGAGCTAGGGCTGGAGACACGGTAATCTTTGCGGGTACAGTAGTTGTCATACCAGATATATTAGCACTAGCCTCTCCGGGAGAAAGAGCAGAATGTCGTCGAGAAGCTTCAGAGCGAAGAAACTCTGCAGTTGGACATGAAGGAATGAGGGGGTTACGAGCACTAGGAACTGGAGAGCTGGATGACATTCAAAGGATGAGGAATACACCTGACTTTTTCAACAGACTTGTTGATAGCATTGCACCTGCAGTCTTTGGCCATCAAGATATCAAGCGAGCAATCTTGCTGATGCTGTTAGGTGGTGTCCACAAGTTAACTCACGAAGGCATTAACCTTCGAGGTGACATCAACGTCTGTATAGTAGGAGATCCAAGCTGTGCAAAATCTCAGTTTCTTAAGTATACTTCAGGTATTGTGCCAAGATCAGTTTACACATCTGGAAAGTCCTCTTCTGCTGCTGGATTGACTGCAACTGTAGCCAAAGAACCAGAAACTGGGGAATTTTGTATTGAGGCCGGTGCCTTGATGCTTGCTGACAATGGTATTTGCTGTATTGATGAATTTGACAAAATGGACATCAGGGATCAGGTTGCAATTCATGAAGCTATGGAGCAGCAGACCATAAGCATAACAAAAGCCGGAATACAGGCAACACTAAATGCTAGAACATCAATCCTCGCTGCTGCTAATCCTACAGGAGGGCGCTATGACAAGTCTAAACCACTCAAGTATAATGTTGCTCTGCCTCCTGCTATTCTCTCAAGGTTTGACCTCGTCTACGTGATGATAGATGATCCAGATGATCAAACGGACTACCATATTGCACACCACATTGTGAGAGTGCACCAGAAGCATGAAGATGCTCTTGCTCCTGCATTTACTACTGCAGAGTTGAAGCGTTACATTGCATATGCAAAAACTCTAAAACCAAAGTTAAGTTTAGAAGCCAGAAAGGTATTGGTGGACTCTTATGTTGCTCTTCGCAGAGGAGATACAACTCCTGGATGTAGGGTTGCCTATCGCATGACAGTCAGGCAGCTTGAGGCATTAATAAGGTTGTCTGAAGCAATTGCTCGTAGTTATTTGGAGACTCTGGTTCAACCGCGTCATGTTCGTTTAGCAGTGACTTTACTGAAAACTTCAATAATCAGTGTGGAATCTAGCGAGATTGACCTATCTGAATTTCAAGAAGAAACTAGTGGAGGTGGAGATGGTGATAATAATGCCGATGGGCGTAATCAGGTTGATGCTGAACCTAGGAATGATGCAACAGAGGCAACTACTGGAAATGGTGGTTCTGGAAATAGTCAACATAGGAAGGAGAAACTTCTCGTGAGTGATGAATATTTTCAGAGAGTTACCCAAGCCCTTGTGATGCGCCTCAGACAGCACGAAGAATATGTGAATCAAGAAGGACCTGGGCTGGCGGGAATGAGGCAGAGAGACTTAATTGAATGGTATGTGGATCAACAGAACGAAAGAAATAGCTATAGCTCGATGGAGGAGGCAAATAAAGAAATTAAATTAGTTAGAGCTATTATCCAGCATTTGATAGTGCAGGAAGGTCATTTGATAGTCGTAGATGATGGGAGGCCGGTAGATGGCGAGGTTGAAGGCGAACCACCATCAATAAGAATTAGAAACAATAGGATTCTAGCTGTGGCTCCTAATTATGTCGTCGATTGA | 2358 | 44.32 | MHFNFSIPRPSPTIAFLFSFRINGNSGDPYYEAEVEAMMGGESNTMFIDFAHLMGSNNLLNIAIADEYLRFEPYLKNACKRFVMEQNPSFVADDNPFKDINVAFCNIPVSRRLRELTTAEIGKLVSVTGVVTRTSEVRPELLQGTFKCLECGNVIKNVEQQFKYTEPTICMNPTCSNRTKWALLRQESKFADWQRVRMQETSEEIPAGSLPRSLDVILRHEMVERARAGDTVIFAGTVVVIPDILALASPGERAECRREASERRNSAVGHEGMRGLRALGTGELDDIQRMRNTPDFFNRLVDSIAPAVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYTSGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPTGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDDQTDYHIAHHIVRVHQKHEDALAPAFTTAELKRYIAYAKTLKPKLSLEARKVLVDSYVALRRGDTTPGCRVAYRMTVRQLEALIRLSEAIARSYLETLVQPRHVRLAVTLLKTSIISVESSEIDLSEFQEETSGGGDGDNNADGRNQVDAEPRNDATEATTGNGGSGNSQHRKEKLLVSDEYFQRVTQALVMRLRQHEEYVNQEGPGLAGMRQRDLIEWYVDQQNERNSYSSMEEANKEIKLVRAIIQHLIVQEGHLIVVDDGRPVDGEVEGEPPSIRIRNNRILAVAPNYVVD | 785 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 38932 | 45285 | - | MELO3C006995.2.1 | Cme08g00004 | 334267 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme08g00004 | 785 | MobiDBLite | consensus disorder prediction | 644 | 663 | - | - | |
| Cme08g00004 | 785 | MobiDBLite | consensus disorder prediction | 618 | 663 | - | - | |
| Cme08g00004 | 785 | Gene3D | - | 14 | 109 | - | - | |
| Cme08g00004 | 785 | SUPERFAMILY | Nucleic acid-binding proteins | 25 | 243 | IPR012340 | - | |
| Cme08g00004 | 785 | SMART | mcm | 109 | 607 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Cme08g00004 | 785 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 306 | 606 | IPR027417 | - | |
| Cme08g00004 | 785 | Pfam | MCM N-terminal domain | 16 | 104 | IPR027925 | - | |
| Cme08g00004 | 785 | CDD | MCM6 | 299 | 605 | - | - | |
| Cme08g00004 | 785 | Gene3D | - | 282 | 611 | IPR027417 | - | |
| Cme08g00004 | 785 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM6 | 36 | 735 | - | - | |
| Cme08g00004 | 785 | Pfam | MCM P-loop domain | 284 | 506 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cme08g00004 | 785 | Pfam | MCM OB domain | 113 | 241 | IPR033762 | - | |
| Cme08g00004 | 785 | Gene3D | - | 140 | 191 | - | - | |
| Cme08g00004 | 785 | Pfam | MCM AAA-lid domain | 521 | 606 | IPR041562 | - | |
| Cme08g00004 | 785 | ProSiteProfiles | MCM family domain profile. | 296 | 502 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cme08g00004 | 785 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 36 | 735 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Cme08g00004 | 785 | Pfam | MCM6 C-terminal winged-helix domain | 666 | 784 | IPR041024 | - | |
| Cme08g00004 | 785 | Gene3D | - | 113 | 241 | IPR012340 | - | |
| Cme08g00004 | 785 | ProSitePatterns | MCM family signature. | 405 | 413 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Cme08g00004 | 785 | Gene3D | - | 662 | 785 | - | - | |
| Cme08g00004 | 785 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 449 | 461 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cme08g00004 | 785 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 397 | 411 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cme08g00004 | 785 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 337 | 352 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cme08g00004 | 785 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 425 | 438 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cme08g00004 | 785 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 476 | 484 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cme08g00004 | 785 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 160 | 177 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Cme08g00004 | 785 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 110 | 122 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Cme08g00004 | 785 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 272 | 293 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Cme08g00004 | 785 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 213 | 224 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Cme08g00004 | 785 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 68 | 80 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme01g01361 | Cme-Chr1:16983976 | Cme08g00004 | Cme-Chr8:38932 | 1.67E-116 | dispersed | |
| Cme01g02199 | Cme-Chr1:30791929 | Cme08g00004 | Cme-Chr8:38932 | 3.19E-112 | dispersed | |
| Cme05g01856 | Cme-Chr5:27326640 | Cme08g00004 | Cme-Chr8:38932 | 8.83E-95 | dispersed | |
| Cme08g00004 | Cme-Chr8:38932 | Cme08g00150 | Cme-Chr8:1080036 | 9.94E-91 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme08g00004 | K02542 | - | csv:101219775 | 1438.32 |