Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00004 ATGCACTTCAACTTTTCGATCCCCCGTCCCTCACCAACCATTGCATTTCTTTTCAGTTTTCGCATCAATGGGAACTCTGGTGACCCTTACTACGAGGCAGAGGTAGAAGCGATGATGGGTGGCGAATCTAACACCATGTTCATTGATTTCGCTCACCTCATGGGCTCCAATAATCTTCTTAACATTGCAATCGCCGACGAATACCTGAGGTTTGAACCATACCTGAAAAACGCTTGTAAGCGATTCGTAATGGAGCAGAATCCTTCTTTCGTCGCTGACGATAACCCCTTCAAGGACATAAATGTTGCTTTCTGTAACATTCCTGTTTCTAGGAGGTTGAGAGAATTGACTACTGCAGAGATTGGGAAATTAGTATCCGTGACAGGAGTGGTGACGCGGACAAGCGAGGTCCGACCAGAGCTTCTACAGGGGACCTTCAAGTGCTTAGAATGTGGAAATGTCATAAAGAATGTCGAACAACAATTTAAGTACACCGAGCCAACAATATGTATGAACCCAACCTGTTCGAATAGAACAAAATGGGCATTACTTCGGCAAGAGAGTAAATTCGCTGATTGGCAGAGGGTGCGAATGCAAGAGACTTCAGAGGAGATTCCAGCTGGCTCTCTTCCACGATCTTTGGATGTTATTCTCCGCCATGAAATGGTTGAACGAGCTAGGGCTGGAGACACGGTAATCTTTGCGGGTACAGTAGTTGTCATACCAGATATATTAGCACTAGCCTCTCCGGGAGAAAGAGCAGAATGTCGTCGAGAAGCTTCAGAGCGAAGAAACTCTGCAGTTGGACATGAAGGAATGAGGGGGTTACGAGCACTAGGAACTGGAGAGCTGGATGACATTCAAAGGATGAGGAATACACCTGACTTTTTCAACAGACTTGTTGATAGCATTGCACCTGCAGTCTTTGGCCATCAAGATATCAAGCGAGCAATCTTGCTGATGCTGTTAGGTGGTGTCCACAAGTTAACTCACGAAGGCATTAACCTTCGAGGTGACATCAACGTCTGTATAGTAGGAGATCCAAGCTGTGCAAAATCTCAGTTTCTTAAGTATACTTCAGGTATTGTGCCAAGATCAGTTTACACATCTGGAAAGTCCTCTTCTGCTGCTGGATTGACTGCAACTGTAGCCAAAGAACCAGAAACTGGGGAATTTTGTATTGAGGCCGGTGCCTTGATGCTTGCTGACAATGGTATTTGCTGTATTGATGAATTTGACAAAATGGACATCAGGGATCAGGTTGCAATTCATGAAGCTATGGAGCAGCAGACCATAAGCATAACAAAAGCCGGAATACAGGCAACACTAAATGCTAGAACATCAATCCTCGCTGCTGCTAATCCTACAGGAGGGCGCTATGACAAGTCTAAACCACTCAAGTATAATGTTGCTCTGCCTCCTGCTATTCTCTCAAGGTTTGACCTCGTCTACGTGATGATAGATGATCCAGATGATCAAACGGACTACCATATTGCACACCACATTGTGAGAGTGCACCAGAAGCATGAAGATGCTCTTGCTCCTGCATTTACTACTGCAGAGTTGAAGCGTTACATTGCATATGCAAAAACTCTAAAACCAAAGTTAAGTTTAGAAGCCAGAAAGGTATTGGTGGACTCTTATGTTGCTCTTCGCAGAGGAGATACAACTCCTGGATGTAGGGTTGCCTATCGCATGACAGTCAGGCAGCTTGAGGCATTAATAAGGTTGTCTGAAGCAATTGCTCGTAGTTATTTGGAGACTCTGGTTCAACCGCGTCATGTTCGTTTAGCAGTGACTTTACTGAAAACTTCAATAATCAGTGTGGAATCTAGCGAGATTGACCTATCTGAATTTCAAGAAGAAACTAGTGGAGGTGGAGATGGTGATAATAATGCCGATGGGCGTAATCAGGTTGATGCTGAACCTAGGAATGATGCAACAGAGGCAACTACTGGAAATGGTGGTTCTGGAAATAGTCAACATAGGAAGGAGAAACTTCTCGTGAGTGATGAATATTTTCAGAGAGTTACCCAAGCCCTTGTGATGCGCCTCAGACAGCACGAAGAATATGTGAATCAAGAAGGACCTGGGCTGGCGGGAATGAGGCAGAGAGACTTAATTGAATGGTATGTGGATCAACAGAACGAAAGAAATAGCTATAGCTCGATGGAGGAGGCAAATAAAGAAATTAAATTAGTTAGAGCTATTATCCAGCATTTGATAGTGCAGGAAGGTCATTTGATAGTCGTAGATGATGGGAGGCCGGTAGATGGCGAGGTTGAAGGCGAACCACCATCAATAAGAATTAGAAACAATAGGATTCTAGCTGTGGCTCCTAATTATGTCGTCGATTGA 2358 44.32 MHFNFSIPRPSPTIAFLFSFRINGNSGDPYYEAEVEAMMGGESNTMFIDFAHLMGSNNLLNIAIADEYLRFEPYLKNACKRFVMEQNPSFVADDNPFKDINVAFCNIPVSRRLRELTTAEIGKLVSVTGVVTRTSEVRPELLQGTFKCLECGNVIKNVEQQFKYTEPTICMNPTCSNRTKWALLRQESKFADWQRVRMQETSEEIPAGSLPRSLDVILRHEMVERARAGDTVIFAGTVVVIPDILALASPGERAECRREASERRNSAVGHEGMRGLRALGTGELDDIQRMRNTPDFFNRLVDSIAPAVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYTSGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPTGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDDQTDYHIAHHIVRVHQKHEDALAPAFTTAELKRYIAYAKTLKPKLSLEARKVLVDSYVALRRGDTTPGCRVAYRMTVRQLEALIRLSEAIARSYLETLVQPRHVRLAVTLLKTSIISVESSEIDLSEFQEETSGGGDGDNNADGRNQVDAEPRNDATEATTGNGGSGNSQHRKEKLLVSDEYFQRVTQALVMRLRQHEEYVNQEGPGLAGMRQRDLIEWYVDQQNERNSYSSMEEANKEIKLVRAIIQHLIVQEGHLIVVDDGRPVDGEVEGEPPSIRIRNNRILAVAPNYVVD 785
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 38932 45285 - MELO3C006995.2.1 Cme08g00004 334267

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00004 785 MobiDBLite consensus disorder prediction 644 663 - -
Cme08g00004 785 MobiDBLite consensus disorder prediction 618 663 - -
Cme08g00004 785 Gene3D - 14 109 - -
Cme08g00004 785 SUPERFAMILY Nucleic acid-binding proteins 25 243 IPR012340 -
Cme08g00004 785 SMART mcm 109 607 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cme08g00004 785 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 306 606 IPR027417 -
Cme08g00004 785 Pfam MCM N-terminal domain 16 104 IPR027925 -
Cme08g00004 785 CDD MCM6 299 605 - -
Cme08g00004 785 Gene3D - 282 611 IPR027417 -
Cme08g00004 785 PANTHER DNA REPLICATION LICENSING FACTOR MCM6 36 735 - -
Cme08g00004 785 Pfam MCM P-loop domain 284 506 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme08g00004 785 Pfam MCM OB domain 113 241 IPR033762 -
Cme08g00004 785 Gene3D - 140 191 - -
Cme08g00004 785 Pfam MCM AAA-lid domain 521 606 IPR041562 -
Cme08g00004 785 ProSiteProfiles MCM family domain profile. 296 502 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme08g00004 785 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 36 735 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cme08g00004 785 Pfam MCM6 C-terminal winged-helix domain 666 784 IPR041024 -
Cme08g00004 785 Gene3D - 113 241 IPR012340 -
Cme08g00004 785 ProSitePatterns MCM family signature. 405 413 IPR018525 GO:0003677|GO:0005524|GO:0006260
Cme08g00004 785 Gene3D - 662 785 - -
Cme08g00004 785 PRINTS Mini-chromosome maintenance (MCM) protein family signature 449 461 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme08g00004 785 PRINTS Mini-chromosome maintenance (MCM) protein family signature 397 411 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme08g00004 785 PRINTS Mini-chromosome maintenance (MCM) protein family signature 337 352 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme08g00004 785 PRINTS Mini-chromosome maintenance (MCM) protein family signature 425 438 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme08g00004 785 PRINTS Mini-chromosome maintenance (MCM) protein family signature 476 484 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme08g00004 785 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 160 177 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Cme08g00004 785 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 110 122 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Cme08g00004 785 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 272 293 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Cme08g00004 785 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 213 224 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Cme08g00004 785 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 68 80 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00004 K02542 MCM6; DNA replication licensing factor MCM6 [EC:5.6.2.3] - csv:101219775 1438.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01361 Cme-Chr1:16983976 Cme08g00004 Cme-Chr8:38932 1.67E-116 dispersed
Cme01g02199 Cme-Chr1:30791929 Cme08g00004 Cme-Chr8:38932 3.19E-112 dispersed
Cme05g01856 Cme-Chr5:27326640 Cme08g00004 Cme-Chr8:38932 8.83E-95 dispersed
Cme08g00004 Cme-Chr8:38932 Cme08g00150 Cme-Chr8:1080036 9.94E-91 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme08g00074 . 94 784 Core DNA Replication Machinery Family AT4G14700 66.2 6.8e-266 913.7
Cme08g00074 . 94 784 Core DNA Replication Machinery Family AT4G12620 68.1 8.9e-274 939.9
Cme03g02018 . 2 360 Core DNA Replication Machinery Family AT2G37560 65.7 1.7e-141 499.2
Cme10g01189 . 9 418 Core DNA Replication Machinery Family AT2G01120 65.0 5.7e-155 544.3
Cme11g02167 . 3 536 Core DNA Replication Machinery Family AT4G29910 59.1 4.1e-177 618.2
Cme05g00896 . 1 277 Core DNA Replication Machinery Family AT1G26840 63.2 1.7e-91 332.8
Cme01g01521 . 4 800 Core DNA Replication Machinery Family AT1G79150 58.0 3.0e-245 845.1
Cme04g01735 . 1 939 Core DNA Replication Machinery Family AT1G44900 73.8 0.0e+00 1311.6
Cme08g00150 . 1 575 Core DNA Replication Machinery Family AT5G46280 80.7 3.0e-268 921.0
Cme01g01361 . 80 830 Core DNA Replication Machinery Family AT2G16440 77.5 0.0e+00 1146.7
Cme05g01856 . 1 742 Core DNA Replication Machinery Family AT2G07690 76.2 0.0e+00 1088.6
Cme08g00004 . 14 785 Core DNA Replication Machinery Family AT5G44635 69.1 0.0e+00 1094.7
Cme01g02199 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.1 0.0e+00 1217.6
Cme11g01369 . 12 458 Core DNA Replication Machinery Family AT2G29680 53.3 1.9e-136 483.0
Cme11g01369 . 22 427 Core DNA Replication Machinery Family AT1G07270 52.8 1.7e-120 429.9
Cme01g01799 . 1 593 Core DNA Replication Machinery Family AT3G25100 76.2 2.5e-257 884.8
Cme04g02557 . 12 792 Core DNA Replication Machinery Family AT3G09660 73.0 0.0e+00 1098.2
Cme01g00219 . 10 477 Core DNA Replication Machinery Family AT2G14050 76.8 2.9e-211 731.9
Cme01g02620 . 1 200 Core DNA Replication Machinery Family AT1G80190 66.3 4.0e-74 274.6
Cme07g01243 . 1 145 Core DNA Replication Machinery Family AT3G12530 71.0 2.7e-59 224.9
Cme03g00250 . 118 312 Core DNA Replication Machinery Family AT1G19080 54.0 2.5e-46 182.2
Cme03g00250 . 118 312 Core DNA Replication Machinery Family AT3G55490 54.0 2.5e-46 182.2
Cme06g00165 . 1 188 Core DNA Replication Machinery Family AT5G49010 55.3 3.3e-46 181.8
Cme11g00335 . 9 1546 Core DNA Replication Machinery Family AT5G67100 60.7 0.0e+00 1761.5
Cme12g01926 . 3 622 Core DNA Replication Machinery Family AT1G67630 62.3 5.3e-218 754.2
Cme11g02327 . 8 412 Core DNA Replication Machinery Family AT1G67320 64.3 9.1e-165 577.0
Cme09g00110 . 1 118 Core DNA Replication Machinery Family AT5G41880 75.4 1.9e-52 203.8
Cme08g01142 . 1 1086 Core DNA Replication Machinery Family AT5G63960 80.6 0.0e+00 1794.6
Cme04g02239 . 1 495 Core DNA Replication Machinery Family AT2G42120 55.3 4.4e-150 528.1
Cme11g02327 . 8 412 Core DNA Replication Machinery Family AT1G67320 64.3 9.1e-165 577.0
Cme09g01463 . 34 158 Core DNA Replication Machinery Family AT1G09815 60.8 6.3e-38 153.7
Cme11g01900 . 1 2095 Core DNA Replication Machinery Family AT1G08260 71.2 0.0e+00 2984.5
Cme09g00647 . 7 1305 Core DNA Replication Machinery Family AT1G08260 60.8 0.0e+00 1701.8
Cme11g01900 . 25 2206 Core DNA Replication Machinery Family AT2G27120 67.5 0.0e+00 2938.3
Cme09g00647 . 29 1305 Core DNA Replication Machinery Family AT2G27120 59.2 0.0e+00 1620.1
Cme12g02044 . 7 487 Core DNA Replication Machinery Family AT5G22110 68.9 1.4e-192 669.5
Cme05g00231 . 1 926 Core DNA Replication Machinery Family AT5G22010 64.0 2.1e-308 1055.0
Cme06g02668 . 1 331 Core DNA Replication Machinery Family AT1G63160 91.0 1.6e-173 605.5
Cme08g01938 . 1 354 Core DNA Replication Machinery Family AT5G27740 85.3 1.0e-178 622.9
Cme07g00817 . 1 290 Core DNA Replication Machinery Family AT1G21690 80.4 2.7e-128 455.3
Cme03g00527 . 39 254 Core DNA Replication Machinery Family AT1G77470 78.3 6.1e-89 324.7
Cme06g02413 . 32 705 Core DNA Replication Machinery Family AT2G06510 50.7 1.3e-197 686.4
Cme02g01827 . 1 634 Core DNA Replication Machinery Family AT5G08020 66.3 2.8e-240 828.2
Cme06g02413 . 10 814 Core DNA Replication Machinery Family AT5G45400 52.8 7.2e-234 807.4
Cme02g01827 . 1 629 Core DNA Replication Machinery Family AT5G61000 64.3 9.1e-234 806.6
Cme06g02413 . 5 800 Core DNA Replication Machinery Family AT4G19130 53.9 9.9e-230 793.5
Cme04g02390 . 37 142 Core DNA Replication Machinery Family AT4G18590 65.1 1.6e-37 152.1
Cme02g00001 . 1 377 Core DNA Replication Machinery Family AT5G26680 85.0 7.7e-181 630.2
Cme07g01888 . 8 297 Core DNA Replication Machinery Family AT2G25100 68.3 3.7e-115 411.4
Cme11g01841 . 1 849 Core DNA Replication Machinery Family AT1G08130 62.9 1.0e-287 986.1
Cme11g01841 . 201 849 Core DNA Replication Machinery Family AT1G49250 64.2 9.5e-234 806.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007427 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6 1 2 1 1 0 1 0 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme08g00004 Cme_Chr08 FPKM 17.377777 20.515938 10.380074 9.078076 15.033556 10.121062 11.183431 11.76461 15.108422 14.215177