Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00036 ATGGCGCCGGGCCTCAGAGACCTCCAGCTTGCCCATGTCGCCGCCGCAGACCGTCGCCTACCGGATATTTCTGCGGCTGATGAAATCCCCGATGATCTTGAGGATGTGCGTTTGCTTGATTCATACGAGAGGCATGAAGAGAATTTTGGTCAAATTGGGGATGGTATGAAGAGGGTTCAGGTCACAGTTTCTGGGATGACTTGTGCCGCTTGTTCTAATTCCGTGGAGGCTGCTCTCAGGGGCGTTAATGGCGTTTTGATGGCTTCCGTTGCATTGCTTCAGAACAGAGCTGACGTGGTGTTTGATCCCAGCTTGGTTAAGGAGAAGGACATCAAGGAAGCAATAGAAGATGCTGGATTTGAGGCTGAGATTATACCTGAAACCACTTCAGTTGGAAAGAAGTTGCATGGAACACTGGTGGGTCAATTTACCATAGGTGGTATGACGTGTGCAGCATGTGTGAATTCGGTAGAAGGCATATTAAAAGATCTTCCTGGTGTTAGAAGAGCAGTAGTTGCTTTGGCCACATCGTTGGGAGAAGTTGAATACGATCCAACAATAACCAGTAAAGACGATATAGTTAACGCAATTGAGGATGCTGGATTTGAAGCTTCATTTGTACAGAGCAGTGAGCAAGATAAAATTTTACTCACGGTTGCAGGCATTGCTGGTGAGGTTGACGTACAGTTTTTGGAAGCCATACTTAGCAACTTGAAAGGGGTGAAACGGTTTCTTTTTGACAGCACATCAGGAAAACTTGAAATTATTTTTGACCCAGAAGTTGTTGGTCCCAGATCCTTAGTGGATGAGATTGAGGGAAGAAGCAACAGAAAATTTAAACTGCATGTTACAAGCCCTTACACAAGGTTAACATCTAAAGATGTTGAAGAGGCTAACAACATGTTTCGGCTTTTTATCTCCAGTCTGTTTCTCAGTGTGCTCATCTTTCTCCAAAGAGTAATATGTCCTCACATTCCTTTAATCTACTCATTGTTACTCTGGCGCTGTGGGCCCTTCCTCATGGATGATTGGTTAAAGTGGGCATTGGTGACTGTTGTGCAATTTGTCATTGGAAAGCGCTTTTATGTTGCAGCTGCTAGAGCTCTTCGAAATGGTTCAACTAACATGGATGTCTTGGTTGCTTTGGGTACTACGGCCTCTTATGTCTATTCTGTTTGTGCACTTCTCTATGGTGCAGTCACTGGATTCTGGTCTCCTACGTATTTTGAAACAAGTGCTATGTTGATAACTTTTGTACTATTGGGGAAGTATTTGGAGTGTCTTGCCAAGGGGAAAACATCAGATGCCATCAAGAAGTTGGTAGAACTTGCTCCTGCAACTGCTTTATTGCTTATCCGAGATAAAGGAGGGAATCTGATAGAAGAAAGGGAGATCGATGCTCTGTTAATTCAACCTGGCGATGTGTTGAAGGTTCTTCCTGGTACAAAAATTCCAGCAGACGGTGTTGTTGTTTGGGGTTCAAGTTATGTTAATGAGAGTATGGTCACCGGAGAATCTATACCTGTATTGAAGGAGGTTAGCTCGAACGTTATTGGTGGTACAATTAATTTTCATGGAGCCCTTCACATTCAAGCAACAAAAGTAGGATCTGATGCAGTTCTGAACCAGATTATTAGTTTGGTTGAGACAGCTCAGATGTCTAAAGCCCCCATTCAGAAATTTGCTGACTTTGTAGCAAGCATATTCGTTCCTACCGTCGTTGCTATGGCATTATGTACCTTATTTGGTTGGTACGTTGGAGGAATCCTTGGGGCTTATCCTGCTAAATGGCTCCCAGAGAATGGAAATTACTTTGTATTTTCCCTCATGTTTGCAATAGCAGTGGTAGTTATTGCATGTCCTTGTGCACTAGGCTTGGCCACACCTACTGCTGTCATGGTTGCTACAGGGGTTGGCGCCAGCAATGGTGTCTTGATCAAAGGAGGAGATGCTTTGGAGAGGGCCCAAAAGGTTAAGTACGTGATTTTTGATAAAACAGGCACACTAACCCAAGGGAAAGCGACCGTTACTACGGCCAAAGTATTCACAGAAATTTCTCGAGGAGATTTTCTTAAGTTGGTTGCTTCAGCAGAGGCTAGCAGTGAACACCCATTGGGAAAAGCTATGGTTGAATTTCTCTGCGTTGCCAGGCCAAGGCATCCAGTGCATTATTGA 2175 44.18 MAPGLRDLQLAHVAAADRRLPDISAADEIPDDLEDVRLLDSYERHEENFGQIGDGMKRVQVTVSGMTCAACSNSVEAALRGVNGVLMASVALLQNRADVVFDPSLVKEKDIKEAIEDAGFEAEIIPETTSVGKKLHGTLVGQFTIGGMTCAACVNSVEGILKDLPGVRRAVVALATSLGEVEYDPTITSKDDIVNAIEDAGFEASFVQSSEQDKILLTVAGIAGEVDVQFLEAILSNLKGVKRFLFDSTSGKLEIIFDPEVVGPRSLVDEIEGRSNRKFKLHVTSPYTRLTSKDVEEANNMFRLFISSLFLSVLIFLQRVICPHIPLIYSLLLWRCGPFLMDDWLKWALVTVVQFVIGKRFYVAAARALRNGSTNMDVLVALGTTASYVYSVCALLYGAVTGFWSPTYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELAPATALLLIRDKGGNLIEEREIDALLIQPGDVLKVLPGTKIPADGVVVWGSSYVNESMVTGESIPVLKEVSSNVIGGTINFHGALHIQATKVGSDAVLNQIISLVETAQMSKAPIQKFADFVASIFVPTVVAMALCTLFGWYVGGILGAYPAKWLPENGNYFVFSLMFAIAVVVIACPCALGLATPTAVMVATGVGASNGVLIKGGDALERAQKVKYVIFDKTGTLTQGKATVTTAKVFTEISRGDFLKLVASAEASSEHPLGKAMVEFLCVARPRHPVHY 724
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 294487 300543 + MELO3C007027.2.1 Cme08g00036 334299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00036 724 Pfam haloacid dehalogenase-like hydrolase 658 713 - -
Cme08g00036 724 SUPERFAMILY HMA, heavy metal-associated domain 210 273 IPR036163 GO:0046872
Cme08g00036 724 CDD HMA 142 205 IPR006121 GO:0046872
Cme08g00036 724 Pfam E1-E2 ATPase 443 640 - -
Cme08g00036 724 ProSiteProfiles Heavy-metal-associated domain profile. 58 124 IPR006121 GO:0046872
Cme08g00036 724 Gene3D - 141 206 - -
Cme08g00036 724 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 376 713 IPR027256 GO:0006812|GO:0016021|GO:0019829
Cme08g00036 724 SUPERFAMILY HMA, heavy metal-associated domain 53 126 IPR036163 GO:0046872
Cme08g00036 724 ProSiteProfiles Heavy-metal-associated domain profile. 214 272 IPR006121 GO:0046872
Cme08g00036 724 SUPERFAMILY HMA, heavy metal-associated domain 140 210 IPR036163 GO:0046872
Cme08g00036 724 Gene3D - 430 552 - -
Cme08g00036 724 PRINTS Copper-transporting ATPase 1 signature 84 107 - -
Cme08g00036 724 PRINTS Copper-transporting ATPase 1 signature 113 133 - -
Cme08g00036 724 PRINTS Copper-transporting ATPase 1 signature 58 83 - -
Cme08g00036 724 PRINTS P-type cation-transporting ATPase superfamily signature 662 676 - -
Cme08g00036 724 PRINTS P-type cation-transporting ATPase superfamily signature 498 512 - -
Cme08g00036 724 Gene3D - 653 672 IPR023214 -
Cme08g00036 724 TIGRFAM TIGR00003: copper ion binding protein 142 204 IPR006122 GO:0005507
Cme08g00036 724 TIGRFAM TIGR00003: copper ion binding protein 59 122 IPR006122 GO:0005507
Cme08g00036 724 PANTHER ATP7, ISOFORM B 24 715 - -
Cme08g00036 724 ProSitePatterns Heavy-metal-associated domain. 145 174 IPR017969 GO:0046872
Cme08g00036 724 Gene3D - 673 712 IPR023299 GO:0000166
Cme08g00036 724 Gene3D - 56 128 - -
Cme08g00036 724 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 415 691 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme08g00036 724 SUPERFAMILY Calcium ATPase, transmembrane domain M 399 653 IPR023298 -
Cme08g00036 724 CDD HMA 60 123 IPR006121 GO:0046872
Cme08g00036 724 Pfam Heavy-metal-associated domain 61 121 IPR006121 GO:0046872
Cme08g00036 724 Pfam Heavy-metal-associated domain 143 203 IPR006121 GO:0046872
Cme08g00036 724 ProSitePatterns Heavy-metal-associated domain. 63 93 IPR017969 GO:0046872
Cme08g00036 724 ProSitePatterns E1-E2 ATPases phosphorylation site. 664 670 IPR018303 -
Cme08g00036 724 ProSiteProfiles Heavy-metal-associated domain profile. 140 206 IPR006121 GO:0046872
Cme08g00036 724 SUPERFAMILY Calcium ATPase, transduction domain A 462 548 IPR008250 -
Cme08g00036 724 PANTHER HEAVY METAL P-TYPE ATPASE 24 715 - -
Cme08g00036 724 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 664 713 IPR023299 GO:0000166
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00036 Cme-Chr8:294487 Cme08g01961 Cme-Chr8:24343751 2.34E-15 dispersed
Cme08g00036 Cme-Chr8:294487 Cme07g00287 Cme-Chr7:1857193 2.92E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00036 K17686 - csv:101205642 1332.01