Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00042 ATGGGGAAGAAGAAGAAGAGAGTTTCGTCTAAGGTATGGTGCTACTATTGCGATAGAGAATTCGATGACGAGAAGATATTGGTTCAGCATCAGAAGGCTAAACACTTCAAATGCCATGTCTGTCACAAGAAGCTTTCTACTGCCGGCGGTATGGTCATCCACGTTCTTCAGGTCCACAAAGAGTCAGTCACCAAAGTTCCTAATGCAAAACCAGGCAGAGAAGCAACAGATATTGAAATCTATGGAATGCAAGGGATTCCTCCTGATGTCTTGGCAGCACACTATGGAGAGGAGGAAGAAGAGTCCTTGTCGAAGGTGGCCAAAGTGGAGATGCCATCAAATCAGATGGTTGGAGGTGTGGTGCCCGGATCGCTGGGTATAATGTACCCTCCTCAACCTGGTTTAGCTGCAATGCAACCTATTTATCCTTCAACTGGACAAGCGCAGCCTACTGCCTGGCCTGTTCCACCTCGTCCCCAACCTTGGTTCCCCCCAAATTCAGCCGTTTCAATTCCTCCTCCTGCCCCATTGGGCTATGCTCAGCAGCCCCTATTTCCTGTGCAGACTGCAAGGCCTCCACTTCCAGTATCATCAACTCCTATGCTCCAGCCTTTACAGATAACGCCTCCTGGATTGACTTCAACTGCACCTACAGTTTCTGTATCTCAACCGTTGTTCCCTGTTGTTAGTAATAGTCATGGACCTACCCAAAGCTCTCCTTTTTCTTCATCTACACTTTCAACAAGCATTCCTTTGACCTCGGCAGCAGATATCAAGGGCTCAGTGACGCATCTGGGTACCAACTTTTCTACAATTGGAAATCAAGTTGCAAACATTCCAGGTGGAATACTAAGCAATTCACACTCCTATGCTTCGGGACCAAATACAGGTGGTCCTTCTATCGGTCCACCTCCTGTAATTGCAAATAAAGCTCCTACTCAACCATCAACAAATGAAGTATATTTGGTTTGGGATGATGAGGCAATGTCTATGGAGGAGAGAAGAATGTCCTTAACTAAGTATCAGGTGCATGATGAAACTAGCCAGGTAAGTTATACTACAACTTAA 1068 46.16 MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMVIHVLQVHKESVTKVPNAKPGREATDIEIYGMQGIPPDVLAAHYGEEEEESLSKVAKVEMPSNQMVGGVVPGSLGIMYPPQPGLAAMQPIYPSTGQAQPTAWPVPPRPQPWFPPNSAVSIPPPAPLGYAQQPLFPVQTARPPLPVSSTPMLQPLQITPPGLTSTAPTVSVSQPLFPVVSNSHGPTQSSPFSSSTLSTSIPLTSAADIKGSVTHLGTNFSTIGNQVANIPGGILSNSHSYASGPNTGGPSIGPPPVIANKAPTQPSTNEVYLVWDDEAMSMEERRMSLTKYQVHDETSQVSYTTT 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 326803 331612 + MELO3C007033.2.1 Cme08g00042 334305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00042 355 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677
Cme08g00042 355 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Cme08g00042 355 Gene3D Classic Zinc Finger 1 66 - -
Cme08g00042 355 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
Cme08g00042 355 PANTHER ZINC FINGER PROTEIN 207 1 353 - -
Cme08g00042 355 PANTHER BUB3-INTERACTING AND GLEBS MOTIF-CONTAINING PROTEIN ZNF207 1 353 - -
Cme08g00042 355 SMART c2h2final6 12 35 IPR013087 -
Cme08g00042 355 SMART c2h2final6 36 59 IPR013087 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41721 None None None None Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00042 - - cmo:103484275 687.567