Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00050 ATGGATATTATTTACTGTGCACGTCTACTATGTGTTGTTGTCTGTTTTGGGATGTTTGTATGCGCGTCTTGTCTGGATGAATTCGGTGATTCAACAGCTGTTTACATTGTAACTCTCAAGGAACCTCCTTCTGCTACTCATTATTATGGTCAGCTTAGACAAAATACCACTTCTTTTAGTACTTCTGGTGGATTAAGCATCCATAAAGCAAGAAACAAATCAAGAAAGCATCAAAGATATAGATCTTACATAGCTCGAGTTCATGATTCATTGTTGAAGAAGGTCTTGAGGGGAGAGAAATATCTGAAGCTGTACAGTTACCATTTCTTGATCAATGGATTTGCTGTGCTTGTTACCGAAGAACAGGCAAATAAACTTTCAAAGAGGATAGAGGTGGCAAATGTTGTCATGGATTTCTCTGTTAGAACTGCTACGACCCATACTCCACAGTTCTTGGGCCTCCCGCAGGGAGCTTGGTCTCAAGATGGTGGCTTTGAATCTGCTGGAGCTGGGATTGTGATAGGGTTCATTGACACTGGCATTGATCCTTCGCACCCCAGTTTTGCTGATGATTTGACTGATAATCCGTTTCCCGTTCCGGCTCACTTCTCTGGAATTTGTGAGGTAACTCCAGATTTTCCTTCTGGGTCTTGCAACCGGAAGCTTGTGGGAGCGCGCCATTTTGCAGCATCAGCTATAACAAGGGGAATATTTAATGCAACTCAGGATTATGCATCACCATTTGATGGTGATGGACATGGCACGCACACAGCTTCAATTGCTGCTGGAAACCATGGCATTCCAGTCATAGTTGCTGGACATCACTTTGGAAATGCCAGTGGGATGGCTCCTCGTTCACATATTGCTGTTTACAAGGCACTGTACAAAAGCTTTGGAGGTTTTGCTGCTGATGTTGTTGCTGCAGTTGATCAGTTTGTTTCTGGCTCTGCAATGGGAGTTGGAGTTGAGAAGTTCTTGACGACTTGGTATCAAACTTCTGCTGCTCAGGATGGGGTGGATATAATAAGTTTATCAATCACACCAAATCGGCGTCCTCCTGGTATTGCAACGTTTTTTAATCCCATTGATATGGCGCTGCTCTCTGCTGTAAAGACTGGTATATTTGTTGTGCAAGCGGCTGGCAACACTGGACCAGCACCAAAGAGCATGTCTTCCTTCAGTCCATGGATCTTTACTGTTGGCGCTGCTTCTCACGATAGAAGCTATGCTAACTCTATAAGCCTTGGCAATAATGTCACCATCCCGGGAGTCGGACTTGCACCTGGAACTTATAATGACACAAAGTACAAACTAATTGCTGCAATACATGCATTGAACAATGACACAAGTGTGTCGGAGGACATGTACGTGGGCGAATGCCAAGACTCGAGTAACTTTGATCAGAATCTGATCGAAGGGAACCTTCTAATCTGCAGCTATTCAATCAGATTTGTTCTAGGGCTTTCCACGGTTAAACAGGCTTTACAGACAGCAAAAAACTTGAGTGCTGCTGGTTTTAGGCTCAACCCAATTCCTATGAAAATGCCTGGCATCATTATTTCATCACCAGAAGATTCCAAGGTTGCGCTCTACCTTATGCTTCTTCAATACTACAATTCTTCCTTGGAAGTAGATGGATTAACAAAGAAAATTTCTAAATTTGGAGCCGTTGCTAGCATATGTGGAGGATTGAAGGCAAATTATAGCTCTTCTGCCCCACAAATTATGTACTACTCTGCTAGAGGACCAGATCCTGAAGACAGTTCTCTTGATGATTCTGATATTATGAAGCCCAACTTGGTAGCTCCTGGAAATTTCATATGGGCTGCTTGGAGTTCTGTTGCCACCGACTCTATCGAATTTCTTGGTGAAAACTTTGCCATGATGTCTGGAACAAGCATGGCTGCTCCTCATATTGCTGGCCTAGCCTCACTCATAAAACAGAAGTATCCTAGTCTTAGTCCTTCAGCCGTTGCATCTGCTCTATCGACGACAGCTTCTCTTTATGACAAGACTGGTGGACCAATCATGGCTCAGCGTGCTTATGCTAACCCCGAACAAAACCAGTCTCCAGCTACACCCTTTGATATGGGAAGTGGTTTTGTGAATGCAACAGCAGCTCTCAACCCAGGGTTGATATTTGATTCCAGTTATAGTGATTATATGTCGTTTCTTTGCGGTATCAATGGATCATCTCCTGTGGTATTCAACTACACAGCCCAGAATTGTGGGCTTTACAACTCTAGCATCACTGGAGCTGATTTGAACTTGCCCTCTGTGACTATAGCAAAACTTAACCAGTCGAGAGTAGTTCGACGAACCGTGACCAACATTGCTGGACCTGAGTTTTACAGTGTTGGTTGGAGTGCTCCTTATGGGATTTCTTTGAAAGTTTCTCCAGTTCGATTTACAATCAGCAGTGGCGAGAAACAAGAGCTAACCATATTCTTCAACGCCACGATGAACAGCTCAGTTGCTAGCTTTGGTAGAATTGGACTTTTCGGGAGTGCAGGCCATATAATAAACATCCCTCTTTCAGTAATTTTGAAGATCTCATATAACTATACTACTAATTGA 2577 43.38 MDIIYCARLLCVVVCFGMFVCASCLDEFGDSTAVYIVTLKEPPSATHYYGQLRQNTTSFSTSGGLSIHKARNKSRKHQRYRSYIARVHDSLLKKVLRGEKYLKLYSYHFLINGFAVLVTEEQANKLSKRIEVANVVMDFSVRTATTHTPQFLGLPQGAWSQDGGFESAGAGIVIGFIDTGIDPSHPSFADDLTDNPFPVPAHFSGICEVTPDFPSGSCNRKLVGARHFAASAITRGIFNATQDYASPFDGDGHGTHTASIAAGNHGIPVIVAGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAVDQFVSGSAMGVGVEKFLTTWYQTSAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAVKTGIFVVQAAGNTGPAPKSMSSFSPWIFTVGAASHDRSYANSISLGNNVTIPGVGLAPGTYNDTKYKLIAAIHALNNDTSVSEDMYVGECQDSSNFDQNLIEGNLLICSYSIRFVLGLSTVKQALQTAKNLSAAGFRLNPIPMKMPGIIISSPEDSKVALYLMLLQYYNSSLEVDGLTKKISKFGAVASICGGLKANYSSSAPQIMYYSARGPDPEDSSLDDSDIMKPNLVAPGNFIWAAWSSVATDSIEFLGENFAMMSGTSMAAPHIAGLASLIKQKYPSLSPSAVASALSTTASLYDKTGGPIMAQRAYANPEQNQSPATPFDMGSGFVNATAALNPGLIFDSSYSDYMSFLCGINGSSPVVFNYTAQNCGLYNSSITGADLNLPSVTIAKLNQSRVVRRTVTNIAGPEFYSVGWSAPYGISLKVSPVRFTISSGEKQELTIFFNATMNSSVASFGRIGLFGSAGHIINIPLSVILKISYNYTTN 858
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 397288 404016 - MELO3C007040.2.1 Cme08g00050 334313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00050 858 Pfam Fibronectin type-III domain 754 847 IPR041469 -
Cme08g00050 858 ProSitePatterns Serine proteases, subtilase family, serine active site. 631 641 IPR023828 -
Cme08g00050 858 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 22 142 IPR037045 -
Cme08g00050 858 ProSiteProfiles Serine proteases, subtilase domain profile. 149 708 - -
Cme08g00050 858 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 333 851 IPR045051 -
Cme08g00050 858 CDD Peptidases_S8_3 144 667 IPR034197 -
Cme08g00050 858 Pfam Subtilase family 169 678 IPR000209 GO:0006508|GO:0008236
Cme08g00050 858 Gene3D - 725 849 - -
Cme08g00050 858 PANTHER TRIPEPTIDYL-PEPTIDASE II-RELATED 333 851 - -
Cme08g00050 858 PRINTS Subtilisin serine protease family (S8) signature 630 646 IPR015500 -
Cme08g00050 858 PRINTS Subtilisin serine protease family (S8) signature 249 262 IPR015500 -
Cme08g00050 858 PRINTS Subtilisin serine protease family (S8) signature 169 188 IPR015500 -
Cme08g00050 858 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 20 312 IPR045051 -
Cme08g00050 858 PANTHER TRIPEPTIDYL-PEPTIDASE II-RELATED 20 312 - -
Cme08g00050 858 SUPERFAMILY Subtilisin-like 144 712 IPR036852 GO:0004252|GO:0006508
Cme08g00050 858 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 174 185 IPR023827 -
Cme08g00050 858 Gene3D Peptidase S8/S53 domain 171 721 IPR036852 GO:0004252|GO:0006508
Cme08g00050 858 Gene3D - 406 568 - -
Cme08g00050 858 Pfam Peptidase inhibitor I9 34 144 IPR010259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01295 Cme-Chr5:21268432 Cme08g00050 Cme-Chr8:397288 0 dispersed
Cme08g00050 Cme-Chr8:397288 Cme12g00903 Cme-Chr12:15866560 3.63E-140 dispersed
Cme08g00050 Cme-Chr8:397288 Cme01g02803 Cme-Chr1:35044878 4.21E-90 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00050 - - csv:101208681 1565.82