Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00057 ATGTTGTTGTTGTTTGAGATGGAGAATTATGATCAAGAAGTAGGTGATTTGACTGATATTGTAAGAGGAAGATCAACAACAACAACAACAAGAAGCTCTACTACTACTACTACTACTTCTTCTTCTTCTTCTAATTGCAAGACTGAAATACTAGCTGATCATCATCTTCAAGATTCCACCTCTTTCTATTATTCTTCTTCATCACAATTGCTGCAACTACAAGATCATCAAGATCATCATCATCATCACCAATACAGTTTTGGAGATCCATTTTGCAGTGTTGTTGCTCCTTCAGTACTTGATCATCATCTTCATCAACATCATCATCATCAGCTGGTGGATAATAATACTAATATTAATGCTTTTTTCAATGGAATTTCTGCTTCTGCTGCTACTACTACTGCTGCTGCTGCTCATCAAGATCATGAAGATCATCACGAAGTTATGAAAAGCAGCCCTTGTAATTCCAATTTATTCTCACGAATGCTTCAGATCTCTCCTTCATCCAACAAATTCCAAACCATTTCTTCACTTACTAATAATTCCCCACCTCCTTCTAATTTCTTAATTTCAAATCATTCTCCTACCACTACGACTACTCCACTGCATCCTGATCATCACCTTCATCATTTTCTTCATCATCATGATCAAAATAATAATAATAATAATAATAATACCTCTGCCGCCCTTCACATCTCTTCTCCCCGGAACCCCCCCGGTATCAAGCGAAGGAAGAGTCAAGCAAGGAAGGTGGTTTGTGTTCCAGCTCCAGTTGCTGCCAGTAGTAGACCAAATGGGGAAGTGATTCCTTCTGATCTTTGGGCTTGGAGGAAATATGGTCAGAAACCCATTAAAGGTTCTCCATATCCTAGGGGGTACTATAGATGCAGCAGCTCAAAAGGATGTTCAGCAAGAAAACAAGTGGAGAGAAGTAGAACAGATCCAAACATGTTGGTGATTACTTACACATCTGAACACAACCATCCATGGCCAACTCAAAGAAATGCTCTTGCCGGCTCTTCAAGATCATCTCAGCATTCATCAAAAAACAACACTTCTACTACTACTACTACTACATCTACTACAACACAACCCAATTCTTCAAAATTACTCCATCATAAAAATAAACAAGAAGTTCAAGAAGAAGAAGAAGACCAAGATCATGAAAACAACAACAATGGCACGACGACGGTATTATTATCATCAACAGCAGCAGCAGATGAAGAAGCATCAAATAAGAATAATAATAATGTTAAGGAAGAGGAGATGATTGAGAATGAATTGATGATGAGTAGTACTAGTGAAGGAGGGTTAATTGATGAAGATCATGATTTCTTTGCAGATTTGGAAGAATTAGAAACAGACCCATTAACTCTCTTGTTCAATACCACTACTACTACACAACAACAACAACATCAACAACAACCACCTCACAAATTAGAGCAAATAATCAAAGGATCAGCTGCAGCCGCCTGCTTACACGACGTCGTTCCATTCAATCATCTTTTTGATTGGCCTCCTCCACCACACCAGGAACAACCACCACCTAGTTCTCCTACCAACAGAGGTTTTTATTAA 1578 38.47 MLLLFEMENYDQEVGDLTDIVRGRSTTTTTRSSTTTTTTSSSSSNCKTEILADHHLQDSTSFYYSSSSQLLQLQDHQDHHHHHQYSFGDPFCSVVAPSVLDHHLHQHHHHQLVDNNTNINAFFNGISASAATTTAAAAHQDHEDHHEVMKSSPCNSNLFSRMLQISPSSNKFQTISSLTNNSPPPSNFLISNHSPTTTTTPLHPDHHLHHFLHHHDQNNNNNNNNTSAALHISSPRNPPGIKRRKSQARKVVCVPAPVAASSRPNGEVIPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSSRSSQHSSKNNTSTTTTTTSTTTQPNSSKLLHHKNKQEVQEEEEDQDHENNNNGTTTVLLSSTAAADEEASNKNNNNVKEEEMIENELMMSSTSEGGLIDEDHDFFADLEELETDPLTLLFNTTTTTQQQQHQQQPPHKLEQIIKGSAAAACLHDVVPFNHLFDWPPPPHQEQPPPSSPTNRGFY 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 449728 453222 + MELO3C007048.2.1 Cme08g00057 334320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00057 525 MobiDBLite consensus disorder prediction 217 233 - -
Cme08g00057 525 Pfam WRKY DNA -binding domain 272 329 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme08g00057 525 MobiDBLite consensus disorder prediction 323 370 - -
Cme08g00057 525 MobiDBLite consensus disorder prediction 323 396 - -
Cme08g00057 525 ProSiteProfiles WRKY domain profile. 265 331 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme08g00057 525 MobiDBLite consensus disorder prediction 23 44 - -
Cme08g00057 525 MobiDBLite consensus disorder prediction 503 525 - -
Cme08g00057 525 MobiDBLite consensus disorder prediction 212 249 - -
Cme08g00057 525 SUPERFAMILY WRKY DNA-binding domain 269 331 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme08g00057 525 MobiDBLite consensus disorder prediction 296 315 - -
Cme08g00057 525 Gene3D WRKY domain 244 324 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme08g00057 525 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 14 475 IPR044810 GO:0003700
Cme08g00057 525 SMART WRKY_cls 270 330 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme08g00057 525 PANTHER WRKY TRANSCRIPTION FACTOR 14-RELATED 14 475 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00313 Cme-Chr1:2333970 Cme08g00057 Cme-Chr8:449728 1.04E-35 dispersed
Cme07g01614 Cme-Chr7:21928416 Cme08g00057 Cme-Chr8:449728 8.39E-35 dispersed
Cme07g02094 Cme-Chr7:25669058 Cme08g00057 Cme-Chr8:449728 7.48E-32 dispersed
Cme08g00057 Cme-Chr8:449728 Cme12g01018 Cme-Chr12:17787998 2.16E-60 dispersed
Cme08g00057 Cme-Chr8:449728 Cme06g00151 Cme-Chr6:903897 2.60E-44 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41723 PF03106 WRKY 3.10E-25 CL0274 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00057 - - cmo:103484291 751.125