Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme08g00074 | ATGTCTCGAAGATCGACTAGGTTAGTGGAAAAGGCGAGTGCATCTAGAACTAACGGATATGTTGTATCCGAGGGAGACCTTAAAGCTCATAGAAGGAGTCGAACGTGGACAGAAAATAATGAGGTTAAGCTAAATGAAGTTATGTTTTCTCCATCTTTTCAACAATTAGAGGGAAAGAAGAGAAAGACATACAAGAAGAGGTCAATGGTCACAAGAGCAACTGCTTCAAAGAATCCTAATTCGGAGGAGGGGATCAACAAAAGAGGGAGTGGGAGATTAAGGAAGAGGGTGTATTATCAAAAAGTGGTTTTTGATGGTGGTGAATTTGAGGTTGGGGACGATGTTTATGTGAGGAGGAGAGAAGATGCAAGCTCTGATGATGAAGATCCCGAAGTTGAGGAGTGTAGAGTGTGCTTTAAATCTGGAAACGCTGTAATGATCGAGTGTGATGACTGTCTTGGTGGTTTTCATTTGAAGTGTTTGAAGCCTCCAATGAAGGTGATCCCTGAGGGGGATTGGATTTGTGGGTTTTGTGAGGCTGCCAAAATGGGCAAAGAGGTTCAATTGCCAAAGCCTCCGGAGGGTAAAAAACGGGTTAGGACAATGAGGGAAAAGCTTCTAGCAGGCGATTTGTGGGCTGCTCACATTGAAAGTATATGGAAAGAAGTAACGGGTAACCATCAGTGTAAGGTTAGATGGTATATAATCCCAGAAGAGACTGCAGCTGGAAGGCAACCGCATAACTTGAAGAGAGAGCTTTATTTAACTAATGATTTTGCAGATATTGAGATGGAATCGCTTCTTAGACTGTGTGAAGTCATGAATCCGAAAGACTATTATAAAGCCAAGGAAGGGGATGATATATTTTTATGTGAGTATAAATATGACGTTCGTTGGCATAGTTTCAAGAGGTTGGCTGAAATTGATAAAGAACAGGATACTGAAGCAGTTGATAGTGACACAGAGTGGAAGTTGGACCAGAATGCAGACTCTGATTCAGACGGTGATGTGGAATATGAAGAAGAAAGAGCACAAATTTTACTATCTCGAAACTACTCAAGCTCAACCCATGAATTAGCTGCAAATTCAAGGAAAGGACACTTTTGTGGACTACAAAAAATAGGAGCTAAGAAGATCCCAGAGCATACAAGATGTCGCAAACAGACTGAATTGGAAAGAGCAAAGGCAACCCTCATGTTGGCGTCACTACCCAAGTCCCTACCGTGTAGAAATAAAGAAATTGAGGAGATAACTACATTTATTGAAAGTGCTTTATGTGATGATCAATGCTTGGGTCGATGCTTGTACATCTATGGTGTTCCAGGAACAGGTAAGACAATGAGTGTACTGTCGGTAATGAGAAACTTGCGGGCTAAAGTTGATGCAGGAAATCTAAGGCCTCATTGCTTTGTGGAGGTTAATGGTCTAAAGCTGGCAGCACCAGAAAATATATACAGGGTTATACATGAAGCATTAACTGGGCATAGGGTTCATTGGAAAAAGGCGCTTCAGTTGTTGACCAAACGGTTTTCAGACGTAAATAGTTGCAGGAATGATGAGCGGCCTTGCATTCTGCTCATTGATGAACTTGATCTTCTTGTAACAAGAAATCAGTCAATTCTATACAACATTCTCGATTGGCCTACAAAGCCACAAGCAAAGTTGATTGTGATAGGAATTGCAAATACCATGGACCTACCAGAGAAGTTGCTTCCTCGAATTTCAAGCCGAATGGGTATTGAAAGGCTTTGTTTTGGCCCCTATAACCATCAGCAACTTCAAGAAATCATTTTGAGCCGGCTTGAAGGAATCAATGCATTTGAGAAACAAGCCATTGAATTTGCATCGAGAAAGGTGGCTGCTATTTCAGGAGATGCACGTCGTGCTTTGGAGATATGTCGGCGTGCAGCTGAAATTATGGATTATCACCTAAAGAAGCATCTGAGTTTGATTTCCAACACTGCGAAAACACATGTTGGAATAGCTGAGGTGGAAACAGCGATTCAAGAAATGTTTCAAGCACCTCATATTCAAGTGATGAAGAGTTGTTCTAAGCAGAGCAAGATCTTCTTGACAGCCATGGTGCACGACTATTATAAGACGGGTTTGGGTGAAGCAACCTTTGAAAAGCTTGCCATGACTTTCTCAAATCTTTGTACAAGCAATGGAGAAGAATTTCCTGGATATGATGCTCTCCTGAAAGTTGGCTGTAGGCTTGGTGAGTCCAGAATTATTTTATGTGAATCAGGGGCTAAACACCGGTTGCAAAAGTTACAGCTTAATGTTCCAAGTGATGACGTCTCATTTGCACTGAAAGATAGTAAGGATATACCTTGGTTGGCTAAGTATCTTTGA | 2355 | 41.49 | MSRRSTRLVEKASASRTNGYVVSEGDLKAHRRSRTWTENNEVKLNEVMFSPSFQQLEGKKRKTYKKRSMVTRATASKNPNSEEGINKRGSGRLRKRVYYQKVVFDGGEFEVGDDVYVRRREDASSDDEDPEVEECRVCFKSGNAVMIECDDCLGGFHLKCLKPPMKVIPEGDWICGFCEAAKMGKEVQLPKPPEGKKRVRTMREKLLAGDLWAAHIESIWKEVTGNHQCKVRWYIIPEETAAGRQPHNLKRELYLTNDFADIEMESLLRLCEVMNPKDYYKAKEGDDIFLCEYKYDVRWHSFKRLAEIDKEQDTEAVDSDTEWKLDQNADSDSDGDVEYEEERAQILLSRNYSSSTHELAANSRKGHFCGLQKIGAKKIPEHTRCRKQTELERAKATLMLASLPKSLPCRNKEIEEITTFIESALCDDQCLGRCLYIYGVPGTGKTMSVLSVMRNLRAKVDAGNLRPHCFVEVNGLKLAAPENIYRVIHEALTGHRVHWKKALQLLTKRFSDVNSCRNDERPCILLIDELDLLVTRNQSILYNILDWPTKPQAKLIVIGIANTMDLPEKLLPRISSRMGIERLCFGPYNHQQLQEIILSRLEGINAFEKQAIEFASRKVAAISGDARRALEICRRAAEIMDYHLKKHLSLISNTAKTHVGIAEVETAIQEMFQAPHIQVMKSCSKQSKIFLTAMVHDYYKTGLGEATFEKLAMTFSNLCTSNGEEFPGYDALLKVGCRLGESRIILCESGAKHRLQKLQLNVPSDDVSFALKDSKDIPWLAKYL | 784 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 519912 | 522358 | - | MELO3C007066.2.1 | Cme08g00074 | 334337 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme08g00074 | 784 | Pfam | ATPase family associated with various cellular activities (AAA) | 435 | 581 | IPR003959 | GO:0005524|GO:0016887 | |
Cme08g00074 | 784 | ProSiteProfiles | BAH domain profile. | 191 | 306 | IPR001025 | GO:0003682 | |
Cme08g00074 | 784 | Pfam | AAA lid domain | 608 | 643 | IPR041083 | - | |
Cme08g00074 | 784 | MobiDBLite | consensus disorder prediction | 69 | 88 | - | - | |
Cme08g00074 | 784 | Gene3D | - | 74 | 321 | IPR043151 | - | |
Cme08g00074 | 784 | ProSitePatterns | Zinc finger PHD-type signature. | 135 | 178 | IPR019786 | - | |
Cme08g00074 | 784 | Gene3D | - | 387 | 586 | IPR027417 | - | |
Cme08g00074 | 784 | SMART | AAA_5 | 431 | 584 | IPR003593 | - | |
Cme08g00074 | 784 | Pfam | BAH domain | 215 | 303 | IPR001025 | GO:0003682 | |
Cme08g00074 | 784 | Pfam | PHD-finger | 135 | 180 | IPR019787 | - | |
Cme08g00074 | 784 | Gene3D | - | 587 | 673 | - | - | |
Cme08g00074 | 784 | ProSiteProfiles | Zinc finger PHD-type profile. | 132 | 181 | IPR019787 | - | |
Cme08g00074 | 784 | CDD | AAA | 412 | 587 | - | - | |
Cme08g00074 | 784 | SMART | BAH_4 | 166 | 306 | IPR001025 | GO:0003682 | |
Cme08g00074 | 784 | PANTHER | CELL DIVISION CONTROL PROTEIN 6-RELATED | 72 | 780 | - | - | |
Cme08g00074 | 784 | MobiDBLite | consensus disorder prediction | 69 | 85 | - | - | |
Cme08g00074 | 784 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 401 | 643 | IPR027417 | - | |
Cme08g00074 | 784 | MobiDBLite | consensus disorder prediction | 311 | 331 | - | - | |
Cme08g00074 | 784 | MobiDBLite | consensus disorder prediction | 311 | 336 | - | - | |
Cme08g00074 | 784 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 126 | 199 | IPR013083 | - | |
Cme08g00074 | 784 | SUPERFAMILY | FYVE/PHD zinc finger | 121 | 184 | IPR011011 | - | |
Cme08g00074 | 784 | PANTHER | ORIGIN RECOGNITION COMPLEX SUBUNIT 1 | 72 | 780 | IPR020793 | - | |
Cme08g00074 | 784 | SMART | PHD_3 | 134 | 179 | IPR001965 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme08g00074 | Cme-Chr8:519912 | Cme11g01369 | Cme-Chr11:20480863 | 2.43E-26 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
41724 | PF00004 | AAA | 9.30E-20 | CL0023 | Cme | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme08g00074 | K02603 | - | csv:101214082 | 1491.86 |