Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00074 ATGTCTCGAAGATCGACTAGGTTAGTGGAAAAGGCGAGTGCATCTAGAACTAACGGATATGTTGTATCCGAGGGAGACCTTAAAGCTCATAGAAGGAGTCGAACGTGGACAGAAAATAATGAGGTTAAGCTAAATGAAGTTATGTTTTCTCCATCTTTTCAACAATTAGAGGGAAAGAAGAGAAAGACATACAAGAAGAGGTCAATGGTCACAAGAGCAACTGCTTCAAAGAATCCTAATTCGGAGGAGGGGATCAACAAAAGAGGGAGTGGGAGATTAAGGAAGAGGGTGTATTATCAAAAAGTGGTTTTTGATGGTGGTGAATTTGAGGTTGGGGACGATGTTTATGTGAGGAGGAGAGAAGATGCAAGCTCTGATGATGAAGATCCCGAAGTTGAGGAGTGTAGAGTGTGCTTTAAATCTGGAAACGCTGTAATGATCGAGTGTGATGACTGTCTTGGTGGTTTTCATTTGAAGTGTTTGAAGCCTCCAATGAAGGTGATCCCTGAGGGGGATTGGATTTGTGGGTTTTGTGAGGCTGCCAAAATGGGCAAAGAGGTTCAATTGCCAAAGCCTCCGGAGGGTAAAAAACGGGTTAGGACAATGAGGGAAAAGCTTCTAGCAGGCGATTTGTGGGCTGCTCACATTGAAAGTATATGGAAAGAAGTAACGGGTAACCATCAGTGTAAGGTTAGATGGTATATAATCCCAGAAGAGACTGCAGCTGGAAGGCAACCGCATAACTTGAAGAGAGAGCTTTATTTAACTAATGATTTTGCAGATATTGAGATGGAATCGCTTCTTAGACTGTGTGAAGTCATGAATCCGAAAGACTATTATAAAGCCAAGGAAGGGGATGATATATTTTTATGTGAGTATAAATATGACGTTCGTTGGCATAGTTTCAAGAGGTTGGCTGAAATTGATAAAGAACAGGATACTGAAGCAGTTGATAGTGACACAGAGTGGAAGTTGGACCAGAATGCAGACTCTGATTCAGACGGTGATGTGGAATATGAAGAAGAAAGAGCACAAATTTTACTATCTCGAAACTACTCAAGCTCAACCCATGAATTAGCTGCAAATTCAAGGAAAGGACACTTTTGTGGACTACAAAAAATAGGAGCTAAGAAGATCCCAGAGCATACAAGATGTCGCAAACAGACTGAATTGGAAAGAGCAAAGGCAACCCTCATGTTGGCGTCACTACCCAAGTCCCTACCGTGTAGAAATAAAGAAATTGAGGAGATAACTACATTTATTGAAAGTGCTTTATGTGATGATCAATGCTTGGGTCGATGCTTGTACATCTATGGTGTTCCAGGAACAGGTAAGACAATGAGTGTACTGTCGGTAATGAGAAACTTGCGGGCTAAAGTTGATGCAGGAAATCTAAGGCCTCATTGCTTTGTGGAGGTTAATGGTCTAAAGCTGGCAGCACCAGAAAATATATACAGGGTTATACATGAAGCATTAACTGGGCATAGGGTTCATTGGAAAAAGGCGCTTCAGTTGTTGACCAAACGGTTTTCAGACGTAAATAGTTGCAGGAATGATGAGCGGCCTTGCATTCTGCTCATTGATGAACTTGATCTTCTTGTAACAAGAAATCAGTCAATTCTATACAACATTCTCGATTGGCCTACAAAGCCACAAGCAAAGTTGATTGTGATAGGAATTGCAAATACCATGGACCTACCAGAGAAGTTGCTTCCTCGAATTTCAAGCCGAATGGGTATTGAAAGGCTTTGTTTTGGCCCCTATAACCATCAGCAACTTCAAGAAATCATTTTGAGCCGGCTTGAAGGAATCAATGCATTTGAGAAACAAGCCATTGAATTTGCATCGAGAAAGGTGGCTGCTATTTCAGGAGATGCACGTCGTGCTTTGGAGATATGTCGGCGTGCAGCTGAAATTATGGATTATCACCTAAAGAAGCATCTGAGTTTGATTTCCAACACTGCGAAAACACATGTTGGAATAGCTGAGGTGGAAACAGCGATTCAAGAAATGTTTCAAGCACCTCATATTCAAGTGATGAAGAGTTGTTCTAAGCAGAGCAAGATCTTCTTGACAGCCATGGTGCACGACTATTATAAGACGGGTTTGGGTGAAGCAACCTTTGAAAAGCTTGCCATGACTTTCTCAAATCTTTGTACAAGCAATGGAGAAGAATTTCCTGGATATGATGCTCTCCTGAAAGTTGGCTGTAGGCTTGGTGAGTCCAGAATTATTTTATGTGAATCAGGGGCTAAACACCGGTTGCAAAAGTTACAGCTTAATGTTCCAAGTGATGACGTCTCATTTGCACTGAAAGATAGTAAGGATATACCTTGGTTGGCTAAGTATCTTTGA 2355 41.49 MSRRSTRLVEKASASRTNGYVVSEGDLKAHRRSRTWTENNEVKLNEVMFSPSFQQLEGKKRKTYKKRSMVTRATASKNPNSEEGINKRGSGRLRKRVYYQKVVFDGGEFEVGDDVYVRRREDASSDDEDPEVEECRVCFKSGNAVMIECDDCLGGFHLKCLKPPMKVIPEGDWICGFCEAAKMGKEVQLPKPPEGKKRVRTMREKLLAGDLWAAHIESIWKEVTGNHQCKVRWYIIPEETAAGRQPHNLKRELYLTNDFADIEMESLLRLCEVMNPKDYYKAKEGDDIFLCEYKYDVRWHSFKRLAEIDKEQDTEAVDSDTEWKLDQNADSDSDGDVEYEEERAQILLSRNYSSSTHELAANSRKGHFCGLQKIGAKKIPEHTRCRKQTELERAKATLMLASLPKSLPCRNKEIEEITTFIESALCDDQCLGRCLYIYGVPGTGKTMSVLSVMRNLRAKVDAGNLRPHCFVEVNGLKLAAPENIYRVIHEALTGHRVHWKKALQLLTKRFSDVNSCRNDERPCILLIDELDLLVTRNQSILYNILDWPTKPQAKLIVIGIANTMDLPEKLLPRISSRMGIERLCFGPYNHQQLQEIILSRLEGINAFEKQAIEFASRKVAAISGDARRALEICRRAAEIMDYHLKKHLSLISNTAKTHVGIAEVETAIQEMFQAPHIQVMKSCSKQSKIFLTAMVHDYYKTGLGEATFEKLAMTFSNLCTSNGEEFPGYDALLKVGCRLGESRIILCESGAKHRLQKLQLNVPSDDVSFALKDSKDIPWLAKYL 784
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 519912 522358 - MELO3C007066.2.1 Cme08g00074 334337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00074 784 Pfam ATPase family associated with various cellular activities (AAA) 435 581 IPR003959 GO:0005524|GO:0016887
Cme08g00074 784 ProSiteProfiles BAH domain profile. 191 306 IPR001025 GO:0003682
Cme08g00074 784 Pfam AAA lid domain 608 643 IPR041083 -
Cme08g00074 784 MobiDBLite consensus disorder prediction 69 88 - -
Cme08g00074 784 Gene3D - 74 321 IPR043151 -
Cme08g00074 784 ProSitePatterns Zinc finger PHD-type signature. 135 178 IPR019786 -
Cme08g00074 784 Gene3D - 387 586 IPR027417 -
Cme08g00074 784 SMART AAA_5 431 584 IPR003593 -
Cme08g00074 784 Pfam BAH domain 215 303 IPR001025 GO:0003682
Cme08g00074 784 Pfam PHD-finger 135 180 IPR019787 -
Cme08g00074 784 Gene3D - 587 673 - -
Cme08g00074 784 ProSiteProfiles Zinc finger PHD-type profile. 132 181 IPR019787 -
Cme08g00074 784 CDD AAA 412 587 - -
Cme08g00074 784 SMART BAH_4 166 306 IPR001025 GO:0003682
Cme08g00074 784 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 72 780 - -
Cme08g00074 784 MobiDBLite consensus disorder prediction 69 85 - -
Cme08g00074 784 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 401 643 IPR027417 -
Cme08g00074 784 MobiDBLite consensus disorder prediction 311 331 - -
Cme08g00074 784 MobiDBLite consensus disorder prediction 311 336 - -
Cme08g00074 784 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 199 IPR013083 -
Cme08g00074 784 SUPERFAMILY FYVE/PHD zinc finger 121 184 IPR011011 -
Cme08g00074 784 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 1 72 780 IPR020793 -
Cme08g00074 784 SMART PHD_3 134 179 IPR001965 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00074 Cme-Chr8:519912 Cme11g01369 Cme-Chr11:20480863 2.43E-26 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41724 PF00004 AAA 9.30E-20 CL0023 Cme TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00074 K02603 - csv:101214082 1491.86