Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme08g00077 | ATGATGAAGAAAAGGAAATCAAAGCGAGTAAAAATGAAGCTCCCCAAAGAAGCAAAGGAAGAAGTTCACAGCATGAACAACGAAGACGATGAACGAGATTGGGATCTGGAAGATGAGGGAGGCTTGGCGCAAATAAGACGACGAGAGTTTACTTATGGATCTCATCTAGTACAAGGGAAAATGAATCATGGAATGGAGGACTATATAGTTACTGAAGATCGACATGTCGACGACCATAAGCTAGGACTATTTGCAATATTTGATGGCCACTCGGGTCGCGATGTCGCAGAGTACTTGCAGAGCCATCTGTTTGATAACATCTTAAGCCAGTCTGATTTTTGGGAAGACCCTGACGGAGCAATCAGGAGGGCATATAAAGAAACAGATGAAGAGATCTTAGCTAAAAAGGTGGGAACGAGAGGAGGTTCAACAGCAGTCACTGCTATACTAATCGATGGGCAGACTCTAATTGTCGCTCACGTAGGCGATTCACGGGCGGTGATATGCAGGAATGGTTCGGCAAAACCGATTACGGTTGATCACGAACCGGAGAAGGAGAAGGAGCTTGTTGAGAGCCGAGGTGGATTTGTTGTACAAATGCCAGGGAGTGTGCCAAGGGTGGATGGTCAGCTAGCAATGTCAAGGGCATTTGGCGATGCTAAGCTGAAAGAACACATTACTTCAGAACCAGATATCAGGATCGTCGCTATTGAAAATGAGACTGAGTTCGCCATTTTAGCCAGTGATGGCCTCTGGAAGGTAATATCAAACCAGGAAGCTTGTGATTGTATCAGAAAAATGGCTATGGATCCTCAAAAGGCTTCAGAGAAGTTGATCAAAGAGGCATTGTCTAAGATGAGCTACGACGACATTTCCTGCATTGTTGTTACCTTCCACTGA | 900 | 45.0 | MMKKRKSKRVKMKLPKEAKEEVHSMNNEDDERDWDLEDEGGLAQIRRREFTYGSHLVQGKMNHGMEDYIVTEDRHVDDHKLGLFAIFDGHSGRDVAEYLQSHLFDNILSQSDFWEDPDGAIRRAYKETDEEILAKKVGTRGGSTAVTAILIDGQTLIVAHVGDSRAVICRNGSAKPITVDHEPEKEKELVESRGGFVVQMPGSVPRVDGQLAMSRAFGDAKLKEHITSEPDIRIVAIENETEFAILASDGLWKVISNQEACDCIRKMAMDPQKASEKLIKEALSKMSYDDISCIVVTFH | 299 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 529928 | 532057 | + | MELO3C007069.2.1 | Cme08g00077 | 334340 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme08g00077 | 299 | Gene3D | - | 45 | 299 | IPR036457 | - | |
| Cme08g00077 | 299 | PANTHER | PROTEIN PHOSPHATASE 2C 28-RELATED | 26 | 299 | - | - | |
| Cme08g00077 | 299 | Pfam | Protein phosphatase 2C | 61 | 290 | IPR001932 | - | |
| Cme08g00077 | 299 | SMART | PP2C_SIG_2 | 56 | 298 | IPR001932 | - | |
| Cme08g00077 | 299 | PANTHER | ALPHABET, ISOFORM E-RELATED | 26 | 299 | - | - | |
| Cme08g00077 | 299 | SUPERFAMILY | PP2C-like | 49 | 299 | IPR036457 | - | |
| Cme08g00077 | 299 | SMART | PP2C_4 | 47 | 296 | IPR001932 | - | |
| Cme08g00077 | 299 | CDD | PP2Cc | 50 | 298 | IPR001932 | - | |
| Cme08g00077 | 299 | ProSiteProfiles | PPM-type phosphatase domain profile. | 51 | 298 | IPR001932 | - | |
| Cme08g00077 | 299 | MobiDBLite | consensus disorder prediction | 13 | 30 | - | - | |
| Cme08g00077 | 299 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme07g00584 | Cme-Chr7:5037343 | Cme08g00077 | Cme-Chr8:529928 | 6.75E-104 | dispersed | |
| Cme07g01286 | Cme-Chr7:17917710 | Cme08g00077 | Cme-Chr8:529928 | 2.91E-08 | dispersed | |
| Cme08g00077 | Cme-Chr8:529928 | Cme10g01458 | Cme-Chr10:17809458 | 5.19E-39 | dispersed | |
| Cme10g00238 | Cme-Chr10:1567140 | Cme08g00077 | Cme-Chr8:529928 | 2.04E-26 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme08g00077 | - | - | csv:101211141 | 515.383 |