Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00077 ATGATGAAGAAAAGGAAATCAAAGCGAGTAAAAATGAAGCTCCCCAAAGAAGCAAAGGAAGAAGTTCACAGCATGAACAACGAAGACGATGAACGAGATTGGGATCTGGAAGATGAGGGAGGCTTGGCGCAAATAAGACGACGAGAGTTTACTTATGGATCTCATCTAGTACAAGGGAAAATGAATCATGGAATGGAGGACTATATAGTTACTGAAGATCGACATGTCGACGACCATAAGCTAGGACTATTTGCAATATTTGATGGCCACTCGGGTCGCGATGTCGCAGAGTACTTGCAGAGCCATCTGTTTGATAACATCTTAAGCCAGTCTGATTTTTGGGAAGACCCTGACGGAGCAATCAGGAGGGCATATAAAGAAACAGATGAAGAGATCTTAGCTAAAAAGGTGGGAACGAGAGGAGGTTCAACAGCAGTCACTGCTATACTAATCGATGGGCAGACTCTAATTGTCGCTCACGTAGGCGATTCACGGGCGGTGATATGCAGGAATGGTTCGGCAAAACCGATTACGGTTGATCACGAACCGGAGAAGGAGAAGGAGCTTGTTGAGAGCCGAGGTGGATTTGTTGTACAAATGCCAGGGAGTGTGCCAAGGGTGGATGGTCAGCTAGCAATGTCAAGGGCATTTGGCGATGCTAAGCTGAAAGAACACATTACTTCAGAACCAGATATCAGGATCGTCGCTATTGAAAATGAGACTGAGTTCGCCATTTTAGCCAGTGATGGCCTCTGGAAGGTAATATCAAACCAGGAAGCTTGTGATTGTATCAGAAAAATGGCTATGGATCCTCAAAAGGCTTCAGAGAAGTTGATCAAAGAGGCATTGTCTAAGATGAGCTACGACGACATTTCCTGCATTGTTGTTACCTTCCACTGA 900 45.0 MMKKRKSKRVKMKLPKEAKEEVHSMNNEDDERDWDLEDEGGLAQIRRREFTYGSHLVQGKMNHGMEDYIVTEDRHVDDHKLGLFAIFDGHSGRDVAEYLQSHLFDNILSQSDFWEDPDGAIRRAYKETDEEILAKKVGTRGGSTAVTAILIDGQTLIVAHVGDSRAVICRNGSAKPITVDHEPEKEKELVESRGGFVVQMPGSVPRVDGQLAMSRAFGDAKLKEHITSEPDIRIVAIENETEFAILASDGLWKVISNQEACDCIRKMAMDPQKASEKLIKEALSKMSYDDISCIVVTFH 299
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 529928 532057 + MELO3C007069.2.1 Cme08g00077 334340
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00077 299 Gene3D - 45 299 IPR036457 -
Cme08g00077 299 PANTHER PROTEIN PHOSPHATASE 2C 28-RELATED 26 299 - -
Cme08g00077 299 Pfam Protein phosphatase 2C 61 290 IPR001932 -
Cme08g00077 299 SMART PP2C_SIG_2 56 298 IPR001932 -
Cme08g00077 299 PANTHER ALPHABET, ISOFORM E-RELATED 26 299 - -
Cme08g00077 299 SUPERFAMILY PP2C-like 49 299 IPR036457 -
Cme08g00077 299 SMART PP2C_4 47 296 IPR001932 -
Cme08g00077 299 CDD PP2Cc 50 298 IPR001932 -
Cme08g00077 299 ProSiteProfiles PPM-type phosphatase domain profile. 51 298 IPR001932 -
Cme08g00077 299 MobiDBLite consensus disorder prediction 13 30 - -
Cme08g00077 299 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00584 Cme-Chr7:5037343 Cme08g00077 Cme-Chr8:529928 6.75E-104 dispersed
Cme07g01286 Cme-Chr7:17917710 Cme08g00077 Cme-Chr8:529928 2.91E-08 dispersed
Cme08g00077 Cme-Chr8:529928 Cme10g01458 Cme-Chr10:17809458 5.19E-39 dispersed
Cme10g00238 Cme-Chr10:1567140 Cme08g00077 Cme-Chr8:529928 2.04E-26 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00077 - - csv:101211141 515.383