Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00078 ATGGGGAAGTTTCAAATCCGGAAATTCTTGATTCCATTACTACTTCTGATGATTTCTGAGTATTTACAAACTGGAGATGCCAAATCCAATTCCCTTTTCATCAATTGTGGCTCAAGTTCAAATGAAACTGCTGATGGTAGGAAATGGATTGGCGACCTGACTTCAGAAGGGAACTTTTCTGTGGGCAATCTTGGTGCTAATATCAATGCCTCCACAGCCACTTTAAATGGAGATTCAGTCTTTGAGCCGCTGTATAAAACTGCTAGGATATTTACTAATTCCCTGAACTATACTTTTAATGGGGTTTGGGGTAATCATGTTGTTCGACTTCATTTCTGCCCCTTTCCTTTTGAGAACTTAAATGTGAACGATTCATCATTTTCTGTCTCAGCAAATGGTCTTAGATTAGTTTCAAAATTCAGTGTTCCCAATGAGATCGCATATAAGAATATGGAGTTTCAGCGTTCTGGGGTCAATTCAAGTTCATTCTCTTTGATTAAAGAGTTCATTATTTCTGTCAATTCAGAAGCATTTGTTCTTGAGTTCTCCCCTTCTGAAGGATCATTCGGGTTCATCAATGCTATTGAAATCGTTCCCCTGACGGATGAGATTTTTGGAGGTTCCATTGATAAGGTGGGTGGAAGTGCTGTTACTTTGAATGTGAGTGAAAGGGGAACTGAAACTATGTACAGGTTGAATGTTGGAGGGCCTGTGATCAAGCCCACTCAAGATCCAGATCTATGGAGGATGTGGGAAGTGGACTCGAGCTATATGATTACAGCAAATGCTGGGTCTGAGGTACATAACAGTTCTAATGTAACATATGCTTCCACGAATGACTCCATTGTAGCTCCTCTCCCTGTGTATGAAACAGCTAGAACGATGTCTGAGACTGAAGTGCTCGAGAAAAGGTTCAACATGTCGTGGAAATTCGAAATTCATCCTGGTTTCGAGTATTTGATTAGATTGCATTTCTGTGAGCTGCTGTATGAGAAGGCAAGAGAGAGGGTTTTCAAGATTTACATAAACAACAGGACTGCAGTTGAGAGTTTTGATGTGTTTGTACGAGCCGGGGGAATGAACAGAGCATATCATGTGGATTTCCTTGAACCAATTTCATCCAAAATCAACACCCTCTGGATTCAACTAGGCCCGGATACGGCTGCAGGTGCTGCAGGAACAGATGCTCTCTTGAATGGTTTGGAAATCTTTAAGCTGAGTCAAAATGGGAATCTTGCGTACATTGACAGGTTTAATGCCTTGGAGGAATCGAAGGGAAACTCGAAATCTCAAATTCTCTGGATAGGCATTGGAGCAGGTTTAGCCTCTGTTGTTTTCCTTGCTGTTATTACCTTTCTCATCATCTATTTCTGCAGAATCCGGAGAAGGAATTTTACAAAGAAGAACTCTTCTGGGTGGAGAGGAGGATCCAGTCATGGGGGCACTGTCACCAACACTTATGCCAGAGGGTCTGTTGGCGGAGGCCAAAGTGTGTTCGGGACCTTGCCATCTGTCAGAGTTGGCAAATGGTTTACATTAGCAGAGATTCTTGCAGCGACGGATAACTTTGATGAAGCTCTGATGATCGGAGTTGGCGGTTTTGGTAAGGTCTACAGAGGGGAGATTGATGATGGTACTCTTGTGGCAATCAAGAGAGCAAACCCCCAGTCTCAGCAGGGACTTGCTGAGTTCGAAACTGAAATCGAAATGCTTTCTAAACTTAGGCATAGACATCTGGTGTCAATGATTGGCTTTTGTGACGAGCAAAAGGAAATGATCTTGGTTTACGAATATATGGCGAATGGCACTCTTAGAAGTCATCTCTTTGGGAGTAATCTCCCACCTTTGACATGGAAGCAGAGATTGGAAGTGTGCATTGGTGCAGCCAGGGGACTCCATTATCTTCACACAGGAGCTGAGAGAGGAATAATCCACAGAGATGTGAAGACGACCAACATACTCTTGGATGAAAACTTTGTTGCAAAAATGTCTGATTTTGGTCTTTCAAAAACGGGCCCTGCTTTGGATCACACTCATGTTAGTACTGCAGTTAAGGGCAGCTTCGGCTACCTCGATCCGGAGTACTTCAGGCGCCAGCAGCTGAGTGAAAAATCTGATGTTTATTCTTTTGGTGTGGTATTGTTAGAAGTTGTTTGTGCAAGAGCTGTTATAAACCCAAGTTTGCCTAAGGATCAGATAAATCTTGCAGAATGGGCAATGAAATGGCAACGCAAAAAGTTGTTGCACACCATTATAGATCCACATCTTAAAGACAAATATTGTCCCGAATCTCTAAAAACATTTGGAGAAATAGCAGAAAAGTGCCTCGCTGATGAAGGGAAGATTCGGCCAACAATGGGCGAAGTTCTATGGCACCTAGAATATTCTCTGCAACTCCATGATGCTTGGATCCGCACTAATGATGCACAAAGTTCTTGCGCGGTAGACTCCGAAGGAGCACAAACTGAGGAACAGAGGCTAGATCTTGATGGGGAAGAGGAAAGCTCCAACATGAAAGCTTCAACTCCAACTGATCACTCATCCTAA 2547 42.91 MGKFQIRKFLIPLLLLMISEYLQTGDAKSNSLFINCGSSSNETADGRKWIGDLTSEGNFSVGNLGANINASTATLNGDSVFEPLYKTARIFTNSLNYTFNGVWGNHVVRLHFCPFPFENLNVNDSSFSVSANGLRLVSKFSVPNEIAYKNMEFQRSGVNSSSFSLIKEFIISVNSEAFVLEFSPSEGSFGFINAIEIVPLTDEIFGGSIDKVGGSAVTLNVSERGTETMYRLNVGGPVIKPTQDPDLWRMWEVDSSYMITANAGSEVHNSSNVTYASTNDSIVAPLPVYETARTMSETEVLEKRFNMSWKFEIHPGFEYLIRLHFCELLYEKARERVFKIYINNRTAVESFDVFVRAGGMNRAYHVDFLEPISSKINTLWIQLGPDTAAGAAGTDALLNGLEIFKLSQNGNLAYIDRFNALEESKGNSKSQILWIGIGAGLASVVFLAVITFLIIYFCRIRRRNFTKKNSSGWRGGSSHGGTVTNTYARGSVGGGQSVFGTLPSVRVGKWFTLAEILAATDNFDEALMIGVGGFGKVYRGEIDDGTLVAIKRANPQSQQGLAEFETEIEMLSKLRHRHLVSMIGFCDEQKEMILVYEYMANGTLRSHLFGSNLPPLTWKQRLEVCIGAARGLHYLHTGAERGIIHRDVKTTNILLDENFVAKMSDFGLSKTGPALDHTHVSTAVKGSFGYLDPEYFRRQQLSEKSDVYSFGVVLLEVVCARAVINPSLPKDQINLAEWAMKWQRKKLLHTIIDPHLKDKYCPESLKTFGEIAEKCLADEGKIRPTMGEVLWHLEYSLQLHDAWIRTNDAQSSCAVDSEGAQTEEQRLDLDGEEESSNMKASTPTDHSS 848
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 532284 535182 - MELO3C007070.2.1 Cme08g00078 334341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00078 848 Pfam Protein tyrosine and serine/threonine kinase 528 790 IPR001245 GO:0004672|GO:0006468
Cme08g00078 848 MobiDBLite consensus disorder prediction 813 848 - -
Cme08g00078 848 CDD STKc_IRAK 529 794 - -
Cme08g00078 848 PANTHER OS07G0166700 PROTEIN 21 827 IPR045272 GO:0004714|GO:0006468
Cme08g00078 848 Gene3D - 27 201 - -
Cme08g00078 848 Gene3D - 224 408 - -
Cme08g00078 848 Pfam Malectin-like domain 34 405 IPR024788 -
Cme08g00078 848 SMART serkin_6 523 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g00078 848 ProSiteProfiles Protein kinase domain profile. 523 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g00078 848 Gene3D Transferase(Phosphotransferase) domain 1 599 818 - -
Cme08g00078 848 Gene3D Phosphorylase Kinase; domain 1 502 598 - -
Cme08g00078 848 ProSitePatterns Protein kinases ATP-binding region signature. 529 551 IPR017441 GO:0005524
Cme08g00078 848 ProSitePatterns Serine/Threonine protein kinases active-site signature. 643 655 IPR008271 GO:0004672|GO:0006468
Cme08g00078 848 SUPERFAMILY Protein kinase-like (PK-like) 502 795 IPR011009 -
Cme08g00078 848 MobiDBLite consensus disorder prediction 821 835 - -
Cme08g00078 848 PANTHER OSJNBA0058K23.13 PROTEIN 21 827 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00078 Cme-Chr8:532284 Cme08g02094 Cme-Chr8:26526109 0 dispersed
Cme09g01120 Cme-Chr9:15884269 Cme08g00078 Cme-Chr8:532284 2.05E-52 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65042 PF12819 Malectin_like 1.40E-31 CL0202 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00078 - - csv:101216703 1647.48