Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00083 ATGAACAGCTTTCGTACGAATTCTTCACAAAAACCACAATCACAGGAAGGTATGGTTGAGTATATTGGATTATTGAAGATCAAAGTGATTAGAGGGACAAACTTGGCTATAAGAGATATGATGTCGAGCGATCCTTATGTAGTCATGACTCTTGGACAACAGACTGTCCAGACAAGTGTAGTCAGGAGCAACTTGAATCCTGTGTGGAATGAGGAACTGACACTTTCTGTACCTCAAGGTTTTGGATCTATAAAGTTGCAAGTATACGACTATGACACATTTTCAGCCGACGACATAATGGGAGAAGCAGAGATTGATCTCCAACCCTTGATAACATCCGCAATGGCATTTGGAGATGCTGGAATGTTCTCAAACATGCAAATTGGTAAATGGCTGAAATCGCACGACAATGCTCTCTTAAGCGATAGCACCGTTAATATTGTTGATGGAAAGGTGAAGCAAGAGATAGCTCTCAAGCTTCAGAATGTGGAATCAGGAGAACTAGATCTAGAGCTAGAATGGTTGGCTCTTGAACAATAG 540 41.11 MNSFRTNSSQKPQSQEGMVEYIGLLKIKVIRGTNLAIRDMMSSDPYVVMTLGQQTVQTSVVRSNLNPVWNEELTLSVPQGFGSIKLQVYDYDTFSADDIMGEAEIDLQPLITSAMAFGDAGMFSNMQIGKWLKSHDNALLSDSTVNIVDGKVKQEIALKLQNVESGELDLELEWLALEQ 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 567674 570098 - MELO3C007075.2.1 Cme08g00083 334346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00083 179 Pfam C2 domain 23 113 IPR000008 -
Cme08g00083 179 PRINTS C2 domain signature 39 51 IPR000008 -
Cme08g00083 179 PRINTS C2 domain signature 63 76 IPR000008 -
Cme08g00083 179 PRINTS C2 domain signature 84 92 IPR000008 -
Cme08g00083 179 SMART C2_3c 24 119 IPR000008 -
Cme08g00083 179 Gene3D C2 domain 20 179 IPR035892 -
Cme08g00083 179 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD13-RELATED 1 179 - -
Cme08g00083 179 ProSiteProfiles C2 domain profile. 5 120 IPR000008 -
Cme08g00083 179 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 1 179 IPR044518 GO:0005096|GO:0005543
Cme08g00083 179 CDD C2_ArfGAP 22 166 - -
Cme08g00083 179 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 23 167 IPR035892 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00083 Cme-Chr8:567674 Cme12g01105 Cme-Chr12:18945352 1.87E-89 dispersed
Cme08g00083 Cme-Chr8:567674 Cme02g01681 Cme-Chr2:23935345 7.74E-48 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00083 K12486 - csv:101218116 314.694