Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme08g00083 | ATGAACAGCTTTCGTACGAATTCTTCACAAAAACCACAATCACAGGAAGGTATGGTTGAGTATATTGGATTATTGAAGATCAAAGTGATTAGAGGGACAAACTTGGCTATAAGAGATATGATGTCGAGCGATCCTTATGTAGTCATGACTCTTGGACAACAGACTGTCCAGACAAGTGTAGTCAGGAGCAACTTGAATCCTGTGTGGAATGAGGAACTGACACTTTCTGTACCTCAAGGTTTTGGATCTATAAAGTTGCAAGTATACGACTATGACACATTTTCAGCCGACGACATAATGGGAGAAGCAGAGATTGATCTCCAACCCTTGATAACATCCGCAATGGCATTTGGAGATGCTGGAATGTTCTCAAACATGCAAATTGGTAAATGGCTGAAATCGCACGACAATGCTCTCTTAAGCGATAGCACCGTTAATATTGTTGATGGAAAGGTGAAGCAAGAGATAGCTCTCAAGCTTCAGAATGTGGAATCAGGAGAACTAGATCTAGAGCTAGAATGGTTGGCTCTTGAACAATAG | 540 | 41.11 | MNSFRTNSSQKPQSQEGMVEYIGLLKIKVIRGTNLAIRDMMSSDPYVVMTLGQQTVQTSVVRSNLNPVWNEELTLSVPQGFGSIKLQVYDYDTFSADDIMGEAEIDLQPLITSAMAFGDAGMFSNMQIGKWLKSHDNALLSDSTVNIVDGKVKQEIALKLQNVESGELDLELEWLALEQ | 179 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 567674 | 570098 | - | MELO3C007075.2.1 | Cme08g00083 | 334346 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme08g00083 | 179 | Pfam | C2 domain | 23 | 113 | IPR000008 | - | |
Cme08g00083 | 179 | PRINTS | C2 domain signature | 39 | 51 | IPR000008 | - | |
Cme08g00083 | 179 | PRINTS | C2 domain signature | 63 | 76 | IPR000008 | - | |
Cme08g00083 | 179 | PRINTS | C2 domain signature | 84 | 92 | IPR000008 | - | |
Cme08g00083 | 179 | SMART | C2_3c | 24 | 119 | IPR000008 | - | |
Cme08g00083 | 179 | Gene3D | C2 domain | 20 | 179 | IPR035892 | - | |
Cme08g00083 | 179 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD13-RELATED | 1 | 179 | - | - | |
Cme08g00083 | 179 | ProSiteProfiles | C2 domain profile. | 5 | 120 | IPR000008 | - | |
Cme08g00083 | 179 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 | 1 | 179 | IPR044518 | GO:0005096|GO:0005543 | |
Cme08g00083 | 179 | CDD | C2_ArfGAP | 22 | 166 | - | - | |
Cme08g00083 | 179 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 23 | 167 | IPR035892 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme08g00083 | Cme-Chr8:567674 | Cme12g01105 | Cme-Chr12:18945352 | 1.87E-89 | dispersed | |
Cme08g00083 | Cme-Chr8:567674 | Cme02g01681 | Cme-Chr2:23935345 | 7.74E-48 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme08g00083 | K12486 | - | csv:101218116 | 314.694 |