Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00084 ATGAATAATCGCGCAATGGAACTTGGGAGGCCTGGCTCAGGCAAAAGACGATTAAAGGACCTATTGCTTTTAAAGGATAATCGCTTTTGTGCAGATTGTCGCGCTGCAGATCCTAAATGGGCGTCAGCAAATATTGGAGTTTTTATATGCTTGAAATGTTGTGGTGTTCATAGAAGCCTCGGTTCACATATATCTAAGGTGTTATCAGTGACTCTGGATGAATGGAATGATGATGAAATTGATGCAATGATAGAAGTTGGAGGAAATTCTTCTGCAAATGCTATTTATGAAGCCTATATTCCCGAGGGATATTCCAAACCTGGACCTGATGCCACCCACGAACAACGTTCAAAATTTATTCGGTTAGAAATGATTAAATAA 381 39.63 MNNRAMELGRPGSGKRRLKDLLLLKDNRFCADCRAADPKWASANIGVFICLKCCGVHRSLGSHISKVLSVTLDEWNDDEIDAMIEVGGNSSANAIYEAYIPEGYSKPGPDATHEQRSKFIRLEMIK 126
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 570232 572344 - MELO3C027373.2.1 Cme08g00084 334347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00084 126 PRINTS HIV Rev interacting protein signature 27 46 IPR001164 GO:0005096
Cme08g00084 126 PRINTS HIV Rev interacting protein signature 46 63 IPR001164 GO:0005096
Cme08g00084 126 PRINTS HIV Rev interacting protein signature 67 88 IPR001164 GO:0005096
Cme08g00084 126 SMART arf_gap_3 15 125 IPR001164 GO:0005096
Cme08g00084 126 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 8 123 IPR044518 GO:0005096|GO:0005543
Cme08g00084 126 SUPERFAMILY ArfGap/RecO-like zinc finger 15 123 IPR037278 -
Cme08g00084 126 ProSiteProfiles ARF GTPase-activating proteins domain profile. 15 126 IPR001164 GO:0005096
Cme08g00084 126 CDD ArfGap 27 121 - -
Cme08g00084 126 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 8 123 - -
Cme08g00084 126 Pfam Putative GTPase activating protein for Arf 16 122 IPR001164 GO:0005096
Cme08g00084 126 Gene3D Arf GTPase activating protein 2 124 IPR038508 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme08g00084 Cme12g01105 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00084 Cme-Chr8:570232 Cme12g01105 Cme-Chr12:18945352 1.75E-65 dispersed
Cme08g00084 Cme-Chr8:570232 Cme04g00118 Cme-Chr4:921832 1.13E-18 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00084 K12486 - cmo:103503263 258.07