Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00086 ATGACTTCTTCCGTCCACGATTATTCTGATAATGGTGAGGCTGATGAGCAGCGAAAGTACTCTGAATCTCAGAATCATTCTTCATCAGTTATAAATGGACTAAATCAACCAACCCCAAATCAGTATGTAGCATCTCCCCAAGTTGGGGCAGGACATTCTATGGTACCCCCTGCTTATCCATATCCAGATCCTTATTACAGAAGCATCTTCACTCCCTATGATGCTCAACCATATCCTCCACAGCCCTATGGTGGGCAACCTATGGTTCATCTTCAATTAATGGGAATTCAGCAAGCTGGGGTTCCTTTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTCAATGCTAAACAGTATCATGGCATTTTACGACGCAGACAGTCCCGTGCAAAAGCTGAATCAGAAAATAAAGCTCTAAAGTCTAGGAAGCCATACTTGCATGAATCTCGACATCTACACGCGTTGAGGAGAGCTAGAGGTTGTGGTGGACGGTTTCTCAAATCAAATAAAAACGAAAATCATCAAAATGAGGTGGCATCAGGTGATAAATCACAGCCAAATATAAATCTGAATTCTGACAGAAGTGATCTTGCTTCTTCAGAGAACTGA 609 42.53 MTSSVHDYSDNGEADEQRKYSESQNHSSSVINGLNQPTPNQYVASPQVGAGHSMVPPAYPYPDPYYRSIFTPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNKNENHQNEVASGDKSQPNINLNSDRSDLASSEN 202
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 579585 589382 + MELO3C007077.2.1 Cme08g00086 334349
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00086 202 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 1 183 - -
Cme08g00086 202 MobiDBLite consensus disorder prediction 23 47 - -
Cme08g00086 202 ProSitePatterns NF-YA/HAP2 subunit signature. 113 133 IPR018362 GO:0003677|GO:0016602
Cme08g00086 202 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 110 165 IPR001289 GO:0003700|GO:0006355
Cme08g00086 202 Gene3D - 108 169 - -
Cme08g00086 202 ProSiteProfiles NF-YA/HAP2 family profile. 108 168 IPR001289 GO:0003700|GO:0006355
Cme08g00086 202 MobiDBLite consensus disorder prediction 160 202 - -
Cme08g00086 202 SMART cbf3 107 168 IPR001289 GO:0003700|GO:0006355
Cme08g00086 202 MobiDBLite consensus disorder prediction 1 55 - -
Cme08g00086 202 MobiDBLite consensus disorder prediction 168 202 - -
Cme08g00086 202 PRINTS CCAAT-binding transcription factor subunit B signature 111 133 IPR001289 GO:0003700|GO:0006355
Cme08g00086 202 PRINTS CCAAT-binding transcription factor subunit B signature 142 165 IPR001289 GO:0003700|GO:0006355
Cme08g00086 202 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 1 183 IPR001289 GO:0003700|GO:0006355
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00165 Cme-Chr5:1122899 Cme08g00086 Cme-Chr8:579585 6.02E-33 dispersed
Cme08g00086 Cme-Chr8:579585 Cme08g01561 Cme-Chr8:15575873 1.98E-15 dispersed
Cme08g00086 Cme-Chr8:579585 Cme01g02466 Cme-Chr1:32840431 2.79E-42 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41725 PF02045 CBFB_NFYA 4.00E-26 No_clan Cme TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00086 K08064 - csv:101205549 390.193