Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00086 ATGACTTCTTCCGTCCACGATTATTCTGATAATGGTGAGGCTGATGAGCAGCGAAAGTACTCTGAATCTCAGAATCATTCTTCATCAGTTATAAATGGACTAAATCAACCAACCCCAAATCAGTATGTAGCATCTCCCCAAGTTGGGGCAGGACATTCTATGGTACCCCCTGCTTATCCATATCCAGATCCTTATTACAGAAGCATCTTCACTCCCTATGATGCTCAACCATATCCTCCACAGCCCTATGGTGGGCAACCTATGGTTCATCTTCAATTAATGGGAATTCAGCAAGCTGGGGTTCCTTTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTCAATGCTAAACAGTATCATGGCATTTTACGACGCAGACAGTCCCGTGCAAAAGCTGAATCAGAAAATAAAGCTCTAAAGTCTAGGAAGCCATACTTGCATGAATCTCGACATCTACACGCGTTGAGGAGAGCTAGAGGTTGTGGTGGACGGTTTCTCAAATCAAATAAAAACGAAAATCATCAAAATGAGGTGGCATCAGGTGATAAATCACAGCCAAATATAAATCTGAATTCTGACAGAAGTGATCTTGCTTCTTCAGAGAACTGA 609 42.53 MTSSVHDYSDNGEADEQRKYSESQNHSSSVINGLNQPTPNQYVASPQVGAGHSMVPPAYPYPDPYYRSIFTPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNKNENHQNEVASGDKSQPNINLNSDRSDLASSEN 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 579585 589382 + MELO3C007077.2.1 Cme08g00086 334349

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00086 202 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 1 183 - -
Cme08g00086 202 MobiDBLite consensus disorder prediction 23 47 - -
Cme08g00086 202 ProSitePatterns NF-YA/HAP2 subunit signature. 113 133 IPR018362 GO:0003677|GO:0016602
Cme08g00086 202 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 110 165 IPR001289 GO:0003700|GO:0006355
Cme08g00086 202 Gene3D - 108 169 - -
Cme08g00086 202 ProSiteProfiles NF-YA/HAP2 family profile. 108 168 IPR001289 GO:0003700|GO:0006355
Cme08g00086 202 MobiDBLite consensus disorder prediction 160 202 - -
Cme08g00086 202 SMART cbf3 107 168 IPR001289 GO:0003700|GO:0006355
Cme08g00086 202 MobiDBLite consensus disorder prediction 1 55 - -
Cme08g00086 202 MobiDBLite consensus disorder prediction 168 202 - -
Cme08g00086 202 PRINTS CCAAT-binding transcription factor subunit B signature 111 133 IPR001289 GO:0003700|GO:0006355
Cme08g00086 202 PRINTS CCAAT-binding transcription factor subunit B signature 142 165 IPR001289 GO:0003700|GO:0006355
Cme08g00086 202 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 1 183 IPR001289 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00086 K08064 NFYA, HAP2; nuclear transcription factor Y, alpha - csv:101205549 390.193
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00165 Cme-Chr5:1122899 Cme08g00086 Cme-Chr8:579585 6.02E-33 dispersed
Cme08g00086 Cme-Chr8:579585 Cme08g01561 Cme-Chr8:15575873 1.98E-15 dispersed
Cme08g00086 Cme-Chr8:579585 Cme01g02466 Cme-Chr1:32840431 2.79E-42 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme05g00165 . 1 271 CCAAT-HAP2 Transcription Factor Family AT5G12840 50.4 2.1e-54 209.5
Cme05g00165 . 105 341 CCAAT-HAP2 Transcription Factor Family AT3G20910 51.3 9.6e-48 187.6
Cme02g00537 . 51 285 CCAAT-HAP2 Transcription Factor Family AT3G20910 51.7 1.2e-45 180.6
Cme08g00086 . 1 200 CCAAT-HAP2 Transcription Factor Family AT1G30500 52.5 3.9e-47 184.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004501 2 1 2 2 2 1 2 1 1 1 1 2 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41725 PF02045 CBFB_NFYA 4.00E-26 No_clan Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme08g00086 Cme_Chr08 FPKM 22.223845 31.338146 22.852375 25.017458 101.259506 90.300499 92.748146 25.204802 23.658026 23.148834
Cme08g00086 Cme_Chr08 FPKM 102.569351 113.64695 37.496052 41.615959 262.723022 280.648743 257.764313 18.859154 17.585207 18.366823
Cme08g00086 Cme_Chr17 FPKM 103.20681 113.460152 45.874298 46.744831 329.620972 308.660004 321.530212 19.376343 17.877922 15.004442
Cme08g00086 Cme_Chr20 FPKM 109.068123 123.119293 77.125786 82.34584 406.846558 300.576996 382.65213 8.509349 10.269275 12.174199