Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00088 ATGGCGCTAGTTATCCACAAAGATACATCAAACAAACAAATGGATTCAAGCAAATACGTACGTTATACACCCGAGCAAGTTGAGGCATTAGAGAGAGTTTATGCAGAATGTCCAAAGCCTAGTTCTCTCAGAAGGCAGCAGCTCATTAGAGAGTGCCCAATCCTTTCTAACATTGAGCCTAAACAGATCAAAGTTTGGTTTCAAAATCGCAGATGCCGTGAGAAGCAGCGGAAGGAATCATCTCGCCTCCAGAGCGTAAACAGAAAGTTGTCTGCGATGAACAAATTGTTAATGGAGGAGAATGACCGTTTACAGAAGCAGGTGTCCCATTTGGTCTACGAGAATGGCTTTATGCGTCAGCAACTGCATAGTGCATCTGGGACGACTACAGACAATAGCTGTGAGTCTGTAGTCATGAGCGGTCAGCCTCAACAACAGCAAAACCCAAATCCTCAGCATCCTAATAGGGATGTTAACAACCCAGCTGGTCTTCTCGCGGTAGCTGAGGAGACCCTGGCAGAGTTCCTTTCCAAGGCTACAGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGCAATTGCAGTGGGGTAGCAGCACGAGCCTGTGGTCTTGTTAGTCTAGAGCCGACAAAGGTTGCAGAAATTCTCAAAGATCGCCTTTCATGGTATCGTGACTGCCGCTGTCTTAATGTTTTAAGTGTAATTCCTACAGGAAATGGAGGAACAATAGAGCTCATATATATGCAGACTTATGCTCCAACGACATTAGCAGCAGCACGTGACTTCTGGACGATGAGATATACAACAAGTTTAGAAGATGGCAGTCTAGTGGTTTGTGAGAGGTCATTATCTTCTTCAAGTGGTGGCCCTGCAGGGCCTCCGCCATCTACTTTTGTAAGAGCTGAGATGCTTCCTAGTGGCTATTTAATACGAGCATGCGAGGGGGGTGGATCAATTATTCACATTGTTGATCACATTGATTTGGATGTGAGCTTTCAACTTGTAGTTTGGAGTGTCCCTGAAGTTCTTAGGCCACTTTATGAGTCATCCAAGATTCTTGCTCAGAAAATAACAATTGCTGCATTGCGTCATATTAGACAAATTGCTCAAGAGACTAATGGAGAAATTCAATGTACTGGCGGACGTCAACCAGCTGTACTACGGACGTTTAGTCAAAAACTCTGCAGTTCTATAGCTAACCATACCATGATTGTCTTTAGGGGTTTCAATGACGCTGTCAATGGGTTTGCTGATGATGGTTGGTCACCTATGGGAAGTGATGGTGTGGAGGATGTGACAATTCTCATAAACACATCAGCAAACAAGTTTTCTGGATCCCAGTATAACACTTCTTTGTATCCCTCTTTTGGTGGAGGAGTTATGTGTGCAAAAGCGTCAATGTTACTTCAGAATGTTCCCCCTGCTTTGCTTGTTCGATTCCTGAGAGAGCATCGGTCTGAGTGGGCTGATTATGGAGTTGATGCCTACTCTGCTGCAAGTTTAAAAGCCAGTCCGTATGCTGTTCCATGTGCAAGGCCTGGTGGCTTCCCTAGCAGCCAGGTTATTTTGCCTCTTGCTACTACTGTGGAGCATGAGGAGTTTTTGGAGGTGGTTCGACTGGAGGGTCTTGCATTCTCTCCCGAAGATGTTGCTTTGGCTGGACGAGATATGTACTTGTTGCAGCTCTGCAGTGGGGTCGATGAGAATGCTGTTGGAGCTTGCGCTCAGCTTGTGTTTGCACCCATAGATGAATCTTTTGCTGATGATGCTCCACTACTTCCTTCAGGGTTCCGTGTCATACCGCTGGATCCGAAAACGGATGAACCTACTGCTGCTAGAACATTGGATTTAGCATCTACACTTGAAGTTGGTGCCAATGCTGCACGTTCTGCTGGTGAAACTGATTTGAGCAGCTACAACCTTCGTTCAGTCCTGACTATTGCTTTCCAGTTCACCTTTGAGAATCACTTACAGGAAAATGTGGCTGCTATGGCTCGACAATATGTTCGTAGTGTTGTGGGGTCTGTCCAGAGGGTTGCCATGGCCATTTCCCCATCGCGGTTGAGTTCCAATATGGGACTAAAGCCTCTTCCTGGTTCTCCTGAAGCTCTCACTTTGGCTCGATGGATTTGCCGAAGCTACAGGATCCATGTTGGAGCTGAGCTTCTTCAAGCTGATTCCCAGTCTGGGGATGCCATGTTGAAGCAGCTCTGGCACCACTCTGATGCAATCATGTGTTGCTCCGTTAAAACCAACGCATCTGCTGTGTTCACCTTTGCTAACCAGGCTGGTCTGGATATGCTTGAAACCACACTTGTTGGCCTACAAGATATAATGCTAGACAAAATTCTCGATGAGGCGGGTCGGAAGATTCTCTGCTCTGAGTTCCCCAAAATAATGCAGCAGGGGTTTGCAAATCTTCCCTCTGGCATCTGTGTATCCAGTATGGGTCGTCCCATTTCTTATGAGCAAGCCGTTGCCTGGAAGGTTTTA 2535 46.51 MALVIHKDTSNKQMDSSKYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESSRLQSVNRKLSAMNKLLMEENDRLQKQVSHLVYENGFMRQQLHSASGTTTDNSCESVVMSGQPQQQQNPNPQHPNRDVNNPAGLLAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPTKVAEILKDRLSWYRDCRCLNVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWTMRYTTSLEDGSLVVCERSLSSSSGGPAGPPPSTFVRAEMLPSGYLIRACEGGGSIIHIVDHIDLDVSFQLVVWSVPEVLRPLYESSKILAQKITIAALRHIRQIAQETNGEIQCTGGRQPAVLRTFSQKLCSSIANHTMIVFRGFNDAVNGFADDGWSPMGSDGVEDVTILINTSANKFSGSQYNTSLYPSFGGGVMCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAASLKASPYAVPCARPGGFPSSQVILPLATTVEHEEFLEVVRLEGLAFSPEDVALAGRDMYLLQLCSGVDENAVGACAQLVFAPIDESFADDAPLLPSGFRVIPLDPKTDEPTAARTLDLASTLEVGANAARSAGETDLSSYNLRSVLTIAFQFTFENHLQENVAAMARQYVRSVVGSVQRVAMAISPSRLSSNMGLKPLPGSPEALTLARWICRSYRIHVGAELLQADSQSGDAMLKQLWHHSDAIMCCSVKTNASAVFTFANQAGLDMLETTLVGLQDIMLDKILDEAGRKILCSEFPKIMQQGFANLPSGICVSSMGRPISYEQAVAWKVL 845
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 595852 602151 + MELO3C007078.2.1 Cme08g00088 334351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00088 845 CDD homeodomain 18 78 IPR001356 GO:0003677
Cme08g00088 845 Gene3D - 9 85 - -
Cme08g00088 845 Gene3D - 200 388 IPR023393 -
Cme08g00088 845 Coils Coil 83 107 - -
Cme08g00088 845 Pfam MEKHLA domain 719 845 IPR013978 -
Cme08g00088 845 ProSiteProfiles START domain profile. 157 391 IPR002913 GO:0008289
Cme08g00088 845 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 14 845 IPR044830 GO:0003700
Cme08g00088 845 Pfam START domain 167 380 IPR002913 GO:0008289
Cme08g00088 845 CDD START_ArGLABRA2_like 161 383 - -
Cme08g00088 845 CDD bZIP 70 109 - -
Cme08g00088 845 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Cme08g00088 845 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX32 14 845 - -
Cme08g00088 845 Pfam Homeodomain 18 76 IPR001356 GO:0003677
Cme08g00088 845 SMART HOX_1 15 81 IPR001356 GO:0003677
Cme08g00088 845 MobiDBLite consensus disorder prediction 123 157 - -
Cme08g00088 845 SUPERFAMILY Bet v1-like 167 383 - -
Cme08g00088 845 SUPERFAMILY Homeodomain-like 18 79 IPR009057 -
Cme08g00088 845 SMART START_1 166 382 IPR002913 GO:0008289
Cme08g00088 845 MobiDBLite consensus disorder prediction 123 160 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme08g00088 Cme12g01106 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00088 Cme-Chr8:595852 Cme12g01106 Cme-Chr12:18966772 0 dispersed
Cme08g00088 Cme-Chr8:595852 Cme11g00781 Cme-Chr11:9888700 2.41E-20 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41726 PF01852 START 3.20E-45 CL0209 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00088 K09338 - csv:101210154 1604.73