Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00111 ATGAGGCTTTCAACTGCTGGTTTTAGTCCTCAGGCTCCGGAAGGGGAGAGGAGAGTTCTTAATTCGGAGCTTTGGCATGCATGTGCTGGCCCACTTGTTTCTCTACCTGCTGTTGGAAGTCGGGTTGTTTATTTTCCACAGGGTCACAGCGAGCAGGTTGCCATATCGACCAACAGAGAAGTTGATGCCCATATACCAAGTTATCCAAGCTTGCCGCCTCAGCTAATCTGCCAGCTACACAATGTTACAATGCATGCAGATATTGAGACAGATGAAGTGTATGCCCAAATGACCTTGCAACCACTCACTGCTCAAGAGCAAAAGGAGCCTTATCTTCCAGCTGAGTTGGGTGCCCCCAGCAAACAACCAACCAATTATTTTTGTAAAACATTGACAGCAAGTGACACAAGTACACATGGAGGATTTTCTGTTCCTCGTCGTGCTGCTGAGAAAGTGTTTCCTCCATTGGACTTCTCTCAGCAGCCTCCTGCTCAGGAGTTAATTGCAAGGGATCTGCATGATAATGAATGGAAATTTAGGCATATCTTTCGTGGCCAACCCAAAAGGCATCTTCTTACAACTGGATGGAGTGTGTTTGTAAGTGCTAAGAGGCTTGTTGCTGGCGATTCAGTTATCTTTATTTGGAATGAAAAGAATCAATTACTGTTGGGGATCCGGCGAGCTAATCGACCACAAACAGTGATGCCCTCGTCGGTTCTGTCTAGTGACAGCATGCACTTGGGGCTTCTTGCTGCTGCAGCACATGCAGCTGCTACAAATAGTCGGTTCACAATATTTTATAACCCAAGGGCTAGCCCATCAGAGTTCATCATACCTCTGGCCAAGTATGTTAAAGCTGTGTACCATACCCGTGTTTCTGTTGGTATGCGTTTTAGAATGCTATTTGAAACAGAAGAATCAAGCGTTCGTCGTTACATGGGCACTATTACTGGCATCAGTGATTTAGATTCTACCCGGTGGCCAAATTCACACTGGCGCTCAGTCAAGGTTGGATGGGATGAATCTACAGCTGGGGAGAGACAGCCAAGGGTTTCCTTATGGGAGATCGAGCCACTTACAACCTTCCCAATGTATCCTTCTCCATTTCCTCTCAGGCTCAAGCGCCCCTGGCCAACTGGATTTCCCTCTTTCCATGGTCTTAAAGAGGACGATCTGGGATTAAATTCTCAACTAATGTGGCTACGGGGAGATGGTCTAGATCGTGGAATTCAACCTCTGAACTTTCCCGGAATTGGAGTTGCACCATGGATGCAGCCGAGGCTTGATGCTTCTATGGTGGGTCTGCAGCCGGAGATATATCAAGCAATGGCTGCTGCTGCACTGCAGGAGATGAGAACCGTAGATCCTGCTAAGGCGCAAGCTGCTTCACTTCTTCAATTCCAACAAACTCAAAATCTTCCCAACAGGCCTGCTACTTTCATGCCACCTCAGATGTTGCAGCTGCCTCAGCCTCAGCCTCAGCCTCAGCCTCCACAGACCTTTCTTCAAGGTGATGAAAACCAACATCTCTCTCATTCTCAGGCCCAAAGCCAGCCTACTGCTGTTCTTCAGCAGGAGATAAAGCATCAAACATTCAACAACAACCCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAACAACAGCAACAACCACAACAGCAAGTGTTTGATCACCATCAAATTCCCAGTCCCATATCTACAATGTCTCAGTTCAGTTCTGCATCCCAATCCCTGCAAACAATTCCTCCATTATGTCGGCAACAGAGTTTTTCTGATTCAAATCCCAACCATGTGACGAGTCCCATCATTTCACCCTTGCACAGCCTGTTAAGTGGTTCATTTTCACAGGATGAATCATCTCAGATACTTAACCTTCCTCGAACCAATCCCATGATACATTCATCTACATGGCCGTCAAAGCGAGCTGCAATCGATCCTCTTCTCACTTCAGGAAATTCTCAGTTTGTTCTTCCCCAAGGCGAAAATATAGGGACAACTCCGGCTAATATCTCTCAGAATGCTATTTCATTGCCGCCTTTTCCTGGGAGAGAGTGTTCATTAGATCAAGGGAATGTCGATCCACAGAGTAATCTTCTCTTCGGTGTCAATATAGAGCCTTCATCTCTTCTAATGCAGAATGGCATGCCAATCTTAGGGGAATTTGTAGTGACAGTGACTCAACAGCTATACCTTTTTCTTCCAATTATGTGA 2220 46.58 MRLSTAGFSPQAPEGERRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAISTNREVDAHIPSYPSLPPQLICQLHNVTMHADIETDEVYAQMTLQPLTAQEQKEPYLPAELGAPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSTRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGFPSFHGLKEDDLGLNSQLMWLRGDGLDRGIQPLNFPGIGVAPWMQPRLDASMVGLQPEIYQAMAAAALQEMRTVDPAKAQAASLLQFQQTQNLPNRPATFMPPQMLQLPQPQPQPQPPQTFLQGDENQHLSHSQAQSQPTAVLQQEIKHQTFNNNPQQQQQQQQQQQQQQQQQPQQQVFDHHQIPSPISTMSQFSSASQSLQTIPPLCRQQSFSDSNPNHVTSPIISPLHSLLSGSFSQDESSQILNLPRTNPMIHSSTWPSKRAAIDPLLTSGNSQFVLPQGENIGTTPANISQNAISLPPFPGRECSLDQGNVDPQSNLLFGVNIEPSSLLMQNGMPILGEFVVTVTQQLYLFLPIM 739
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 821892 828397 + MELO3C007104.2.1 Cme08g00111 334374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00111 739 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 723 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cme08g00111 739 SMART B3_2 127 229 IPR003340 GO:0003677
Cme08g00111 739 Gene3D - 291 363 - -
Cme08g00111 739 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Cme08g00111 739 MobiDBLite consensus disorder prediction 499 521 - -
Cme08g00111 739 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cme08g00111 739 Gene3D - 125 228 IPR015300 -
Cme08g00111 739 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Cme08g00111 739 MobiDBLite consensus disorder prediction 474 521 - -
Cme08g00111 739 MobiDBLite consensus disorder prediction 484 498 - -
Cme08g00111 739 PANTHER AUXIN RESPONSE FACTOR 6 1 723 - -
Cme08g00111 739 CDD B3_DNA 126 227 IPR003340 GO:0003677
Cme08g00111 739 MobiDBLite consensus disorder prediction 533 560 - -
Cme08g00111 739 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme08g00111 Cme12g01152 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00111 Cme-Chr8:821892 Cme09g01853 Cme-Chr9:22743745 1.01E-115 dispersed
Cme01g00630 Cme-Chr1:5358964 Cme08g00111 Cme-Chr8:821892 1.22E-95 transposed
Cme04g00486 Cme-Chr4:3889065 Cme08g00111 Cme-Chr8:821892 3.52E-136 transposed
Cme04g00660 Cme-Chr4:6836695 Cme08g00111 Cme-Chr8:821892 1.56E-17 transposed
Cme05g01243 Cme-Chr5:20106958 Cme08g00111 Cme-Chr8:821892 4.66E-175 transposed
Cme05g02083 Cme-Chr5:29030924 Cme08g00111 Cme-Chr8:821892 0 transposed
Cme07g01536 Cme-Chr7:21213391 Cme08g00111 Cme-Chr8:821892 1.35E-120 transposed
Cme08g00264 Cme-Chr8:1707190 Cme08g00111 Cme-Chr8:821892 1.08E-109 transposed
Cme08g01661 Cme-Chr8:18129226 Cme08g00111 Cme-Chr8:821892 8.29E-10 transposed
Cme10g01685 Cme-Chr10:23353579 Cme08g00111 Cme-Chr8:821892 2.15E-121 transposed
Cme12g01152 Cme-Chr12:19599255 Cme08g00111 Cme-Chr8:821892 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41728 PF02362 B3 1.20E-21 CL0405 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00111 - - csv:101210406 1330.85