Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme08g00111 | ATGAGGCTTTCAACTGCTGGTTTTAGTCCTCAGGCTCCGGAAGGGGAGAGGAGAGTTCTTAATTCGGAGCTTTGGCATGCATGTGCTGGCCCACTTGTTTCTCTACCTGCTGTTGGAAGTCGGGTTGTTTATTTTCCACAGGGTCACAGCGAGCAGGTTGCCATATCGACCAACAGAGAAGTTGATGCCCATATACCAAGTTATCCAAGCTTGCCGCCTCAGCTAATCTGCCAGCTACACAATGTTACAATGCATGCAGATATTGAGACAGATGAAGTGTATGCCCAAATGACCTTGCAACCACTCACTGCTCAAGAGCAAAAGGAGCCTTATCTTCCAGCTGAGTTGGGTGCCCCCAGCAAACAACCAACCAATTATTTTTGTAAAACATTGACAGCAAGTGACACAAGTACACATGGAGGATTTTCTGTTCCTCGTCGTGCTGCTGAGAAAGTGTTTCCTCCATTGGACTTCTCTCAGCAGCCTCCTGCTCAGGAGTTAATTGCAAGGGATCTGCATGATAATGAATGGAAATTTAGGCATATCTTTCGTGGCCAACCCAAAAGGCATCTTCTTACAACTGGATGGAGTGTGTTTGTAAGTGCTAAGAGGCTTGTTGCTGGCGATTCAGTTATCTTTATTTGGAATGAAAAGAATCAATTACTGTTGGGGATCCGGCGAGCTAATCGACCACAAACAGTGATGCCCTCGTCGGTTCTGTCTAGTGACAGCATGCACTTGGGGCTTCTTGCTGCTGCAGCACATGCAGCTGCTACAAATAGTCGGTTCACAATATTTTATAACCCAAGGGCTAGCCCATCAGAGTTCATCATACCTCTGGCCAAGTATGTTAAAGCTGTGTACCATACCCGTGTTTCTGTTGGTATGCGTTTTAGAATGCTATTTGAAACAGAAGAATCAAGCGTTCGTCGTTACATGGGCACTATTACTGGCATCAGTGATTTAGATTCTACCCGGTGGCCAAATTCACACTGGCGCTCAGTCAAGGTTGGATGGGATGAATCTACAGCTGGGGAGAGACAGCCAAGGGTTTCCTTATGGGAGATCGAGCCACTTACAACCTTCCCAATGTATCCTTCTCCATTTCCTCTCAGGCTCAAGCGCCCCTGGCCAACTGGATTTCCCTCTTTCCATGGTCTTAAAGAGGACGATCTGGGATTAAATTCTCAACTAATGTGGCTACGGGGAGATGGTCTAGATCGTGGAATTCAACCTCTGAACTTTCCCGGAATTGGAGTTGCACCATGGATGCAGCCGAGGCTTGATGCTTCTATGGTGGGTCTGCAGCCGGAGATATATCAAGCAATGGCTGCTGCTGCACTGCAGGAGATGAGAACCGTAGATCCTGCTAAGGCGCAAGCTGCTTCACTTCTTCAATTCCAACAAACTCAAAATCTTCCCAACAGGCCTGCTACTTTCATGCCACCTCAGATGTTGCAGCTGCCTCAGCCTCAGCCTCAGCCTCAGCCTCCACAGACCTTTCTTCAAGGTGATGAAAACCAACATCTCTCTCATTCTCAGGCCCAAAGCCAGCCTACTGCTGTTCTTCAGCAGGAGATAAAGCATCAAACATTCAACAACAACCCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAACAACAGCAACAACCACAACAGCAAGTGTTTGATCACCATCAAATTCCCAGTCCCATATCTACAATGTCTCAGTTCAGTTCTGCATCCCAATCCCTGCAAACAATTCCTCCATTATGTCGGCAACAGAGTTTTTCTGATTCAAATCCCAACCATGTGACGAGTCCCATCATTTCACCCTTGCACAGCCTGTTAAGTGGTTCATTTTCACAGGATGAATCATCTCAGATACTTAACCTTCCTCGAACCAATCCCATGATACATTCATCTACATGGCCGTCAAAGCGAGCTGCAATCGATCCTCTTCTCACTTCAGGAAATTCTCAGTTTGTTCTTCCCCAAGGCGAAAATATAGGGACAACTCCGGCTAATATCTCTCAGAATGCTATTTCATTGCCGCCTTTTCCTGGGAGAGAGTGTTCATTAGATCAAGGGAATGTCGATCCACAGAGTAATCTTCTCTTCGGTGTCAATATAGAGCCTTCATCTCTTCTAATGCAGAATGGCATGCCAATCTTAGGGGAATTTGTAGTGACAGTGACTCAACAGCTATACCTTTTTCTTCCAATTATGTGA | 2220 | 46.58 | MRLSTAGFSPQAPEGERRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAISTNREVDAHIPSYPSLPPQLICQLHNVTMHADIETDEVYAQMTLQPLTAQEQKEPYLPAELGAPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSTRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGFPSFHGLKEDDLGLNSQLMWLRGDGLDRGIQPLNFPGIGVAPWMQPRLDASMVGLQPEIYQAMAAAALQEMRTVDPAKAQAASLLQFQQTQNLPNRPATFMPPQMLQLPQPQPQPQPPQTFLQGDENQHLSHSQAQSQPTAVLQQEIKHQTFNNNPQQQQQQQQQQQQQQQQQPQQQVFDHHQIPSPISTMSQFSSASQSLQTIPPLCRQQSFSDSNPNHVTSPIISPLHSLLSGSFSQDESSQILNLPRTNPMIHSSTWPSKRAAIDPLLTSGNSQFVLPQGENIGTTPANISQNAISLPPFPGRECSLDQGNVDPQSNLLFGVNIEPSSLLMQNGMPILGEFVVTVTQQLYLFLPIM | 739 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 821892 | 828397 | + | MELO3C007104.2.1 | Cme08g00111 | 334374 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme08g00111 | 739 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 1 | 723 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Cme08g00111 | 739 | SMART | B3_2 | 127 | 229 | IPR003340 | GO:0003677 | |
Cme08g00111 | 739 | Gene3D | - | 291 | 363 | - | - | |
Cme08g00111 | 739 | SUPERFAMILY | DNA-binding pseudobarrel domain | 112 | 256 | IPR015300 | - | |
Cme08g00111 | 739 | MobiDBLite | consensus disorder prediction | 499 | 521 | - | - | |
Cme08g00111 | 739 | Pfam | Auxin response factor | 253 | 336 | IPR010525 | GO:0003677|GO:0005634|GO:0006355|GO:0009725 | |
Cme08g00111 | 739 | Gene3D | - | 125 | 228 | IPR015300 | - | |
Cme08g00111 | 739 | Pfam | B3 DNA binding domain | 127 | 228 | IPR003340 | GO:0003677 | |
Cme08g00111 | 739 | MobiDBLite | consensus disorder prediction | 474 | 521 | - | - | |
Cme08g00111 | 739 | MobiDBLite | consensus disorder prediction | 484 | 498 | - | - | |
Cme08g00111 | 739 | PANTHER | AUXIN RESPONSE FACTOR 6 | 1 | 723 | - | - | |
Cme08g00111 | 739 | CDD | B3_DNA | 126 | 227 | IPR003340 | GO:0003677 | |
Cme08g00111 | 739 | MobiDBLite | consensus disorder prediction | 533 | 560 | - | - | |
Cme08g00111 | 739 | ProSiteProfiles | B3 DNA-binding domain profile. | 127 | 229 | IPR003340 | GO:0003677 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cme08g00111 | Cme12g01152 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme08g00111 | Cme-Chr8:821892 | Cme09g01853 | Cme-Chr9:22743745 | 1.01E-115 | dispersed | |
Cme01g00630 | Cme-Chr1:5358964 | Cme08g00111 | Cme-Chr8:821892 | 1.22E-95 | transposed | |
Cme04g00486 | Cme-Chr4:3889065 | Cme08g00111 | Cme-Chr8:821892 | 3.52E-136 | transposed | |
Cme04g00660 | Cme-Chr4:6836695 | Cme08g00111 | Cme-Chr8:821892 | 1.56E-17 | transposed | |
Cme05g01243 | Cme-Chr5:20106958 | Cme08g00111 | Cme-Chr8:821892 | 4.66E-175 | transposed | |
Cme05g02083 | Cme-Chr5:29030924 | Cme08g00111 | Cme-Chr8:821892 | 0 | transposed | |
Cme07g01536 | Cme-Chr7:21213391 | Cme08g00111 | Cme-Chr8:821892 | 1.35E-120 | transposed | |
Cme08g00264 | Cme-Chr8:1707190 | Cme08g00111 | Cme-Chr8:821892 | 1.08E-109 | transposed | |
Cme08g01661 | Cme-Chr8:18129226 | Cme08g00111 | Cme-Chr8:821892 | 8.29E-10 | transposed | |
Cme10g01685 | Cme-Chr10:23353579 | Cme08g00111 | Cme-Chr8:821892 | 2.15E-121 | transposed | |
Cme12g01152 | Cme-Chr12:19599255 | Cme08g00111 | Cme-Chr8:821892 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
41728 | PF02362 | B3 | 1.20E-21 | CL0405 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme08g00111 | - | - | csv:101210406 | 1330.85 |