Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00116 ATGGCTTCCAGGTCCAGCGGTCATAACAAAGCGCGGGTCGGGAGATACGAGCTGGGACGAACCCTTGGAGAGGGCAGCTTCGCCAAGGTTAAGTTTGCTCGGAACTGCGAGACAGGGGAGAATGTAGCCATCAAAATTCTGGACAAAGAGAACATTCTCAAACACAAGATGATCGGGCAGATTAAACGTGAAATATCCACTATGAAACTCATTAGACATCCAAATGTCATTCGCATGTATGAGGTGATGGCTAGCAAGACCAAGATATATATTGTCTTGGAATTTGTAACGGGTGGAGAACTGTTTGACAAAATTTCATGTAAGGGAAGACTGAAAGAAGATGAAGCAAGAAAGTATTTTCAGCAGTTAATAAATGCAGTGGATTATTGTCATAGCAGAGGTGTTTGTCATCGAGACCTAAAGCCAGAGAATTTATTACTGGATGCTAGTGGTGTTCTAAAAATTTCAGATTTTGGATTGAGTGCTCTACCTCAACAAGTACGAGACGATGGATTACTTCACACAACTTGTGGAACACCCAATTATGTTGCTCCAGAGGTTATCGACAATAAAGGGTACTTTGGAGCAAAGGCTGACCTTTGGTCATGTGGGGTTATCCTTTTTGTTCTCATGGCAGGCTACTTGCCATTTGAAGAGTCCAATCTCATGCAACTGTATAAAAAGATATTCAAGGCGGACTTCACATGTCCTCCATGGTTCTCCTCTAGTGCCAAGAAATTAATCAAGAGGATCCTGGATCCGAATCCATTAACTAGAATTACAATTGCTGAAATCCTTGAGAATGATTGGTTTAAGAAAGGATACAAGGCACCCAGTTTCGAAAATGACGAAATCAGTCTTGATAACATTGATGACATCTTTAATGAATCAGGGGGCACTGATAACCTTGTTGTTGAGAGGAGAGAAGATAAATCTGCATCACTTGCATCACCTGTCACCATGAATGCATTCGAGCTCATCTCTAAGTCTCGGGGCCTCGACCTTGCCACTCTCTTTGAGAAGCAAATGGGCATAATTAAACGTGAAACAAGATTCACATCCAATTGTCCAGCAGATGAAATCATTTCGAAGATAAAAAACACAGCTGTTCCTTTGGGTTTTGATGTGAAGATTAATAACTTCAAGATGAAGCTCCAAGGGGAAAAAACTGGACGCAAAGGTCATTTATCGGTTGCAACAGAGATCTTTCAGGTTGCTCCTTCACTGCATCTGGTGGAGCTTCGCAAAGCGGGAGGCGACACTTTAGAATTCCAAAAGTTCTATAATAACCTCTCAACTGGACTGAAAGATATTGTATGGAGATACGGAGACGAGGTGGAGCAGGAAAGTAAGGGTGCAAATTGTTGA 1368 42.03 MASRSSGHNKARVGRYELGRTLGEGSFAKVKFARNCETGENVAIKILDKENILKHKMIGQIKREISTMKLIRHPNVIRMYEVMASKTKIYIVLEFVTGGELFDKISCKGRLKEDEARKYFQQLINAVDYCHSRGVCHRDLKPENLLLDASGVLKISDFGLSALPQQVRDDGLLHTTCGTPNYVAPEVIDNKGYFGAKADLWSCGVILFVLMAGYLPFEESNLMQLYKKIFKADFTCPPWFSSSAKKLIKRILDPNPLTRITIAEILENDWFKKGYKAPSFENDEISLDNIDDIFNESGGTDNLVVERREDKSASLASPVTMNAFELISKSRGLDLATLFEKQMGIIKRETRFTSNCPADEIISKIKNTAVPLGFDVKINNFKMKLQGEKTGRKGHLSVATEIFQVAPSLHLVELRKAGGDTLEFQKFYNNLSTGLKDIVWRYGDEVEQESKGANC 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 871731 876860 - MELO3C007110.2.1 Cme08g00116 334379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00116 455 ProSiteProfiles NAF domain profile. 316 340 IPR018451 GO:0007165
Cme08g00116 455 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 9 446 - -
Cme08g00116 455 CDD STKc_SnRK3 15 270 - -
Cme08g00116 455 CDD CIPK_C 322 437 - -
Cme08g00116 455 ProSiteProfiles Protein kinase domain profile. 16 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g00116 455 Gene3D Phosphorylase Kinase; domain 1 5 95 - -
Cme08g00116 455 Gene3D Kinase associated domain 1, KA1 316 441 - -
Cme08g00116 455 SUPERFAMILY Protein kinase-like (PK-like) 13 278 IPR011009 -
Cme08g00116 455 Pfam Protein kinase domain 16 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g00116 455 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Cme08g00116 455 Gene3D Transferase(Phosphotransferase) domain 1 96 279 - -
Cme08g00116 455 Pfam NAF domain 318 377 IPR004041 GO:0007165
Cme08g00116 455 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Cme08g00116 455 SMART serkin_6 16 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g00116 455 PANTHER SERINE/THREONINE KINASE 9 446 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme08g00116 Cme12g01159 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00116 Cme-Chr8:871731 Cme12g01283 Cme-Chr12:20898876 2.31E-171 dispersed
Cme02g01197 Cme-Chr2:17233080 Cme08g00116 Cme-Chr8:871731 1.76E-156 transposed
Cme02g01653 Cme-Chr2:23738698 Cme08g00116 Cme-Chr8:871731 1.54E-22 transposed
Cme03g01781 Cme-Chr3:26306656 Cme08g00116 Cme-Chr8:871731 0 transposed
Cme04g00191 Cme-Chr4:1429442 Cme08g00116 Cme-Chr8:871731 1.15E-50 transposed
Cme05g00043 Cme-Chr5:306287 Cme08g00116 Cme-Chr8:871731 0 transposed
Cme06g00059 Cme-Chr6:390114 Cme08g00116 Cme-Chr8:871731 0 transposed
Cme09g01504 Cme-Chr9:20204421 Cme08g00116 Cme-Chr8:871731 1.42E-38 transposed
Cme10g00124 Cme-Chr10:882921 Cme08g00116 Cme-Chr8:871731 6.21E-46 transposed
Cme12g01159 Cme-Chr12:19714735 Cme08g00116 Cme-Chr8:871731 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65043 PF00069 Pkinase 5.50E-76 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00116 - - csv:101214052 882.863