Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme08g00150 | ATGGACATTGGCGAAGAAATTAGGGCAGCTCACAAGCGAGATTTTCTGGAATTCCTTGAACAGGATGTTGGGAAAGGAATTTACATGGAAGAGATCAAAGCCATGATTAATCATAAGCGACATCGCCTCATAATCAACATTTCTGATCTTCATTCTTTCAGAGATCTTGGTCCCAGGGTGCTTAGGCATCCCAGTGAGTACATTCAGCCATTCTGCGATGCAGTTACAGAAACTGCTCGCAGTATTGACCCAAAATACCTCAAGGAAGGAGAACAGGTTCTGGTGGGCTTTGAGGGCCCCTTTGTTTCTCGCCGGGTCACTCCCAGGGAACTTCTCTCTCAGTTCATTGGCTCTATGGTCTGCGTTGAGGGCATTGTTACCAAATGTTCTCTTGTTAGACCAAAAGTTGTCAAAAGTGTTCATTTCTGCCCCACAACTGGAGCTTTTACCAGCCGTGAATACCGTGACATTACATCCAACATGGGCTTGCCCACGGGATCTGTGTATCCCACAAGGGATGACAATGGCAACTTGTTGGTTACTGAATATGGCCTGTGTAAATATAAAGATCATCAGACCTTATCAATGCAAGAAATGCCTGAGAATTCGGCACCTGGTCAGCTTCCACGAACAGTGGATGTTGTAGTTGAGGATGACTTAGTTGACTGTTGCAAGCCAGGCGATCGTGTTGCTATTGTAGGAGTATATAAAGCTCTTCCAGGAAAAAGCAAGGGCAGCTTGAATGGAGTGTTCAGGACTGTTCTTGTTGCAAACAATGTTTCTCTACTAAACAAAGAGGCTAATGCGCCAATATACAGTCCTGAGGACTTGAAGAATATTAAAAAGATAGCTGAAAGAGATGACACATTTGATCTTCTTGGTAACTCTCTTGCACCTTCCATATATGGACATTCATGGATAAAGAAAGCAGTGATACTGTTGATGCTTAGTGGGGTGGAGAAGAACTTGAAGAATGGCACTCACCTAAGAGGTGATATCAACATGATGATGGTTGGTGATCCTTCTGTTGCCAAGTCTCAGCTTTTAAGGGCAATCATGAATATTGCACCCTTAGCAATATCCACAACAGGCCGTGGTTCCTCTGGTGTTGGGTTAACTGCCGCTGTTACATCTGATCAGGAAACAGGAGAAAGAAGGCTAGAAGCTGGTGCAATGGTTCTTGCTGATCGAGGTGTTGTCTGTATTGATGAGTTTGACAAGATGAATGATCAAGATAGGGTTGCAATACATGAAGTTATGGAGCAGCAGACTGTTACCATTGCCAAAGCTGGTATTCATGCTTCACTAAATGCTCGGTGCAGCGTGGTAGCAGCTGCAAATCCCATATATGGATCGTACGATCGCTCGTTGACACCAACCAAGAATATTGGTCTTCCTGACTCTCTACTCTCTCGATTTGATCTACTATTTATAGTCTTGGATCAAATGGATCCCGATATTGATCGCCATATTTCAGAGCACGTGTTGCGTATGCACCGTTATCGTTCAGTTCTTGATGGAGGTGAGGCTGGGGGATCAATGTATGGAAGAGAGGAAGAAGCTGAAGCCGACACTTCTGTCTTTGTCAAATATAATAGAATGCTTCATGGGAAGAAGACTGATCGTGGTCGGAAGCGTGATACTCTCACCATCAAGTTTCTTAAGAAGTACATTCATTATGCTAAGCATAGGATACAACCTGACCTAACTGATGAGGCCTCTGAGCATATTGCAACAGCTTATGCAGAACTTAGAAATTCAACTTCAAATGCGAAGACTGGAGGAACTCTTCCAATTACTGCCAGAACCTTGGAAACCATTATACGACTCTCAACTGCTCATGCAAAACTGAAGTTGAGTAGAAAGGTTTCCAAATCTGATGTGGAAGCTGCCTTGAAAGTTCTTAATTTTGCCATATATCATAAAGAGTTGACTGAAATGGAAGAGCGTGAGCAAGAAAGGGAGAAAGAATTGGAAAGAAAGCGCAGAGCTGAAGATCAAACAGTGGAAAATGACAGACCAGAACGAAGTACCAAAAGAAGAGGGGAGGGCTCAAGGACGGATACCATGGAGATCGATGATCCTCCTGCTGAACCTGAACTTGATCTGTCTGCAGAAAGGACCGAAGCATTCAATTCTCTTTTTGGTCAGCATATGCGTGCAAACCGCCTGGATGTTATATCTATTGCAGATATTGAGAACATTGTTAATGCTGCAGCAGATAATCGTTACACTACGGCTGAAATAATGTTGCTCTTGCAGAGACTGCAAGATGATAACAGGGTAATGATAGCTGATACCATGGTCCATATGATATCATGA | 2322 | 43.41 | MDIGEEIRAAHKRDFLEFLEQDVGKGIYMEEIKAMINHKRHRLIINISDLHSFRDLGPRVLRHPSEYIQPFCDAVTETARSIDPKYLKEGEQVLVGFEGPFVSRRVTPRELLSQFIGSMVCVEGIVTKCSLVRPKVVKSVHFCPTTGAFTSREYRDITSNMGLPTGSVYPTRDDNGNLLVTEYGLCKYKDHQTLSMQEMPENSAPGQLPRTVDVVVEDDLVDCCKPGDRVAIVGVYKALPGKSKGSLNGVFRTVLVANNVSLLNKEANAPIYSPEDLKNIKKIAERDDTFDLLGNSLAPSIYGHSWIKKAVILLMLSGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGSYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRHISEHVLRMHRYRSVLDGGEAGGSMYGREEEAEADTSVFVKYNRMLHGKKTDRGRKRDTLTIKFLKKYIHYAKHRIQPDLTDEASEHIATAYAELRNSTSNAKTGGTLPITARTLETIIRLSTAHAKLKLSRKVSKSDVEAALKVLNFAIYHKELTEMEEREQEREKELERKRRAEDQTVENDRPERSTKRRGEGSRTDTMEIDDPPAEPELDLSAERTEAFNSLFGQHMRANRLDVISIADIENIVNAAADNRYTTAEIMLLLQRLQDDNRVMIADTMVHMIS | 773 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 1080036 | 1085804 | - | MELO3C007144.2.1 | Cme08g00150 | 334413 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme08g00150 | 773 | Gene3D | - | 5 | 99 | - | - | |
| Cme08g00150 | 773 | CDD | MCM3 | 292 | 638 | - | - | |
| Cme08g00150 | 773 | Pfam | MCM P-loop domain | 277 | 499 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cme08g00150 | 773 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 3 | 765 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Cme08g00150 | 773 | PANTHER | DNA HELICASE | 3 | 765 | - | - | |
| Cme08g00150 | 773 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 299 | 652 | IPR027417 | - | |
| Cme08g00150 | 773 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 181 | 195 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
| Cme08g00150 | 773 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 207 | 219 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
| Cme08g00150 | 773 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 458 | 468 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
| Cme08g00150 | 773 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 491 | 501 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
| Cme08g00150 | 773 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 627 | 642 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
| Cme08g00150 | 773 | ProSiteProfiles | MCM family domain profile. | 289 | 495 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cme08g00150 | 773 | Pfam | MCM OB domain | 109 | 239 | IPR033762 | - | |
| Cme08g00150 | 773 | MobiDBLite | consensus disorder prediction | 647 | 702 | - | - | |
| Cme08g00150 | 773 | Gene3D | - | 109 | 239 | IPR012340 | - | |
| Cme08g00150 | 773 | Gene3D | - | 271 | 661 | IPR027417 | - | |
| Cme08g00150 | 773 | Coils | Coil | 641 | 668 | - | - | |
| Cme08g00150 | 773 | Pfam | MCM AAA-lid domain | 553 | 636 | IPR041562 | - | |
| Cme08g00150 | 773 | Pfam | MCM N-terminal domain | 12 | 84 | IPR027925 | - | |
| Cme08g00150 | 773 | ProSitePatterns | MCM family signature. | 398 | 406 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Cme08g00150 | 773 | Gene3D | - | 135 | 189 | - | - | |
| Cme08g00150 | 773 | SUPERFAMILY | Nucleic acid-binding proteins | 13 | 257 | IPR012340 | - | |
| Cme08g00150 | 773 | MobiDBLite | consensus disorder prediction | 647 | 693 | - | - | |
| Cme08g00150 | 773 | SMART | AAA_5 | 331 | 484 | IPR003593 | - | |
| Cme08g00150 | 773 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 330 | 345 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cme08g00150 | 773 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 390 | 404 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cme08g00150 | 773 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 418 | 431 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cme08g00150 | 773 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 442 | 454 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cme08g00150 | 773 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 469 | 477 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cme08g00150 | 773 | SMART | mcm | 104 | 640 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme04g01735 | Cme-Chr4:24907917 | Cme08g00150 | Cme-Chr8:1080036 | 1.28E-101 | dispersed | |
| Cme08g00004 | Cme-Chr8:38932 | Cme08g00150 | Cme-Chr8:1080036 | 9.94E-91 | dispersed | |
| Cme08g00150 | Cme-Chr8:1080036 | Cme05g01019 | Cme-Chr5:14716559 | 1.85E-07 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme08g00150 | K02541 | - | csv:101210889 | 1469.91 |