Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00150 ATGGACATTGGCGAAGAAATTAGGGCAGCTCACAAGCGAGATTTTCTGGAATTCCTTGAACAGGATGTTGGGAAAGGAATTTACATGGAAGAGATCAAAGCCATGATTAATCATAAGCGACATCGCCTCATAATCAACATTTCTGATCTTCATTCTTTCAGAGATCTTGGTCCCAGGGTGCTTAGGCATCCCAGTGAGTACATTCAGCCATTCTGCGATGCAGTTACAGAAACTGCTCGCAGTATTGACCCAAAATACCTCAAGGAAGGAGAACAGGTTCTGGTGGGCTTTGAGGGCCCCTTTGTTTCTCGCCGGGTCACTCCCAGGGAACTTCTCTCTCAGTTCATTGGCTCTATGGTCTGCGTTGAGGGCATTGTTACCAAATGTTCTCTTGTTAGACCAAAAGTTGTCAAAAGTGTTCATTTCTGCCCCACAACTGGAGCTTTTACCAGCCGTGAATACCGTGACATTACATCCAACATGGGCTTGCCCACGGGATCTGTGTATCCCACAAGGGATGACAATGGCAACTTGTTGGTTACTGAATATGGCCTGTGTAAATATAAAGATCATCAGACCTTATCAATGCAAGAAATGCCTGAGAATTCGGCACCTGGTCAGCTTCCACGAACAGTGGATGTTGTAGTTGAGGATGACTTAGTTGACTGTTGCAAGCCAGGCGATCGTGTTGCTATTGTAGGAGTATATAAAGCTCTTCCAGGAAAAAGCAAGGGCAGCTTGAATGGAGTGTTCAGGACTGTTCTTGTTGCAAACAATGTTTCTCTACTAAACAAAGAGGCTAATGCGCCAATATACAGTCCTGAGGACTTGAAGAATATTAAAAAGATAGCTGAAAGAGATGACACATTTGATCTTCTTGGTAACTCTCTTGCACCTTCCATATATGGACATTCATGGATAAAGAAAGCAGTGATACTGTTGATGCTTAGTGGGGTGGAGAAGAACTTGAAGAATGGCACTCACCTAAGAGGTGATATCAACATGATGATGGTTGGTGATCCTTCTGTTGCCAAGTCTCAGCTTTTAAGGGCAATCATGAATATTGCACCCTTAGCAATATCCACAACAGGCCGTGGTTCCTCTGGTGTTGGGTTAACTGCCGCTGTTACATCTGATCAGGAAACAGGAGAAAGAAGGCTAGAAGCTGGTGCAATGGTTCTTGCTGATCGAGGTGTTGTCTGTATTGATGAGTTTGACAAGATGAATGATCAAGATAGGGTTGCAATACATGAAGTTATGGAGCAGCAGACTGTTACCATTGCCAAAGCTGGTATTCATGCTTCACTAAATGCTCGGTGCAGCGTGGTAGCAGCTGCAAATCCCATATATGGATCGTACGATCGCTCGTTGACACCAACCAAGAATATTGGTCTTCCTGACTCTCTACTCTCTCGATTTGATCTACTATTTATAGTCTTGGATCAAATGGATCCCGATATTGATCGCCATATTTCAGAGCACGTGTTGCGTATGCACCGTTATCGTTCAGTTCTTGATGGAGGTGAGGCTGGGGGATCAATGTATGGAAGAGAGGAAGAAGCTGAAGCCGACACTTCTGTCTTTGTCAAATATAATAGAATGCTTCATGGGAAGAAGACTGATCGTGGTCGGAAGCGTGATACTCTCACCATCAAGTTTCTTAAGAAGTACATTCATTATGCTAAGCATAGGATACAACCTGACCTAACTGATGAGGCCTCTGAGCATATTGCAACAGCTTATGCAGAACTTAGAAATTCAACTTCAAATGCGAAGACTGGAGGAACTCTTCCAATTACTGCCAGAACCTTGGAAACCATTATACGACTCTCAACTGCTCATGCAAAACTGAAGTTGAGTAGAAAGGTTTCCAAATCTGATGTGGAAGCTGCCTTGAAAGTTCTTAATTTTGCCATATATCATAAAGAGTTGACTGAAATGGAAGAGCGTGAGCAAGAAAGGGAGAAAGAATTGGAAAGAAAGCGCAGAGCTGAAGATCAAACAGTGGAAAATGACAGACCAGAACGAAGTACCAAAAGAAGAGGGGAGGGCTCAAGGACGGATACCATGGAGATCGATGATCCTCCTGCTGAACCTGAACTTGATCTGTCTGCAGAAAGGACCGAAGCATTCAATTCTCTTTTTGGTCAGCATATGCGTGCAAACCGCCTGGATGTTATATCTATTGCAGATATTGAGAACATTGTTAATGCTGCAGCAGATAATCGTTACACTACGGCTGAAATAATGTTGCTCTTGCAGAGACTGCAAGATGATAACAGGGTAATGATAGCTGATACCATGGTCCATATGATATCATGA 2322 43.41 MDIGEEIRAAHKRDFLEFLEQDVGKGIYMEEIKAMINHKRHRLIINISDLHSFRDLGPRVLRHPSEYIQPFCDAVTETARSIDPKYLKEGEQVLVGFEGPFVSRRVTPRELLSQFIGSMVCVEGIVTKCSLVRPKVVKSVHFCPTTGAFTSREYRDITSNMGLPTGSVYPTRDDNGNLLVTEYGLCKYKDHQTLSMQEMPENSAPGQLPRTVDVVVEDDLVDCCKPGDRVAIVGVYKALPGKSKGSLNGVFRTVLVANNVSLLNKEANAPIYSPEDLKNIKKIAERDDTFDLLGNSLAPSIYGHSWIKKAVILLMLSGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGSYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRHISEHVLRMHRYRSVLDGGEAGGSMYGREEEAEADTSVFVKYNRMLHGKKTDRGRKRDTLTIKFLKKYIHYAKHRIQPDLTDEASEHIATAYAELRNSTSNAKTGGTLPITARTLETIIRLSTAHAKLKLSRKVSKSDVEAALKVLNFAIYHKELTEMEEREQEREKELERKRRAEDQTVENDRPERSTKRRGEGSRTDTMEIDDPPAEPELDLSAERTEAFNSLFGQHMRANRLDVISIADIENIVNAAADNRYTTAEIMLLLQRLQDDNRVMIADTMVHMIS 773
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1080036 1085804 - MELO3C007144.2.1 Cme08g00150 334413

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00150 773 Gene3D - 5 99 - -
Cme08g00150 773 CDD MCM3 292 638 - -
Cme08g00150 773 Pfam MCM P-loop domain 277 499 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme08g00150 773 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 3 765 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cme08g00150 773 PANTHER DNA HELICASE 3 765 - -
Cme08g00150 773 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 299 652 IPR027417 -
Cme08g00150 773 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 181 195 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Cme08g00150 773 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 207 219 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Cme08g00150 773 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 458 468 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Cme08g00150 773 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 491 501 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Cme08g00150 773 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 627 642 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Cme08g00150 773 ProSiteProfiles MCM family domain profile. 289 495 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme08g00150 773 Pfam MCM OB domain 109 239 IPR033762 -
Cme08g00150 773 MobiDBLite consensus disorder prediction 647 702 - -
Cme08g00150 773 Gene3D - 109 239 IPR012340 -
Cme08g00150 773 Gene3D - 271 661 IPR027417 -
Cme08g00150 773 Coils Coil 641 668 - -
Cme08g00150 773 Pfam MCM AAA-lid domain 553 636 IPR041562 -
Cme08g00150 773 Pfam MCM N-terminal domain 12 84 IPR027925 -
Cme08g00150 773 ProSitePatterns MCM family signature. 398 406 IPR018525 GO:0003677|GO:0005524|GO:0006260
Cme08g00150 773 Gene3D - 135 189 - -
Cme08g00150 773 SUPERFAMILY Nucleic acid-binding proteins 13 257 IPR012340 -
Cme08g00150 773 MobiDBLite consensus disorder prediction 647 693 - -
Cme08g00150 773 SMART AAA_5 331 484 IPR003593 -
Cme08g00150 773 PRINTS Mini-chromosome maintenance (MCM) protein family signature 330 345 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme08g00150 773 PRINTS Mini-chromosome maintenance (MCM) protein family signature 390 404 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme08g00150 773 PRINTS Mini-chromosome maintenance (MCM) protein family signature 418 431 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme08g00150 773 PRINTS Mini-chromosome maintenance (MCM) protein family signature 442 454 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme08g00150 773 PRINTS Mini-chromosome maintenance (MCM) protein family signature 469 477 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme08g00150 773 SMART mcm 104 640 IPR031327 GO:0003677|GO:0005524|GO:0032508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00150 K02541 MCM3; DNA replication licensing factor MCM3 [EC:5.6.2.3] - csv:101210889 1469.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01735 Cme-Chr4:24907917 Cme08g00150 Cme-Chr8:1080036 1.28E-101 dispersed
Cme08g00004 Cme-Chr8:38932 Cme08g00150 Cme-Chr8:1080036 9.94E-91 dispersed
Cme08g00150 Cme-Chr8:1080036 Cme05g01019 Cme-Chr5:14716559 1.85E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g382 . . Bda02g00085 . . Bpe01g00814 . . . . Cma03g01388 Cma07g00117 . Car07g00104 Sed14g1703 . . Bhi03g00062 Tan03g2685 Cmetu01g2697 . Hepe04g1984 . . Cla01g02393 Cam01g2506 Cec04g2153 Cco04g2230 . Cmu01g2390 . . . . Cone9ag0904 . Csa06g03777 . Cme08g00150 . . . . . . . . . Cmo03g01381 Cmo07g00117 . . . . . . . . . . . . . . . . . . . . . . Chy02g00156 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme08g00074 . 94 784 Core DNA Replication Machinery Family AT4G14700 66.2 6.8e-266 913.7
Cme08g00074 . 94 784 Core DNA Replication Machinery Family AT4G12620 68.1 8.9e-274 939.9
Cme03g02018 . 2 360 Core DNA Replication Machinery Family AT2G37560 65.7 1.7e-141 499.2
Cme10g01189 . 9 418 Core DNA Replication Machinery Family AT2G01120 65.0 5.7e-155 544.3
Cme11g02167 . 3 536 Core DNA Replication Machinery Family AT4G29910 59.1 4.1e-177 618.2
Cme05g00896 . 1 277 Core DNA Replication Machinery Family AT1G26840 63.2 1.7e-91 332.8
Cme01g01521 . 4 800 Core DNA Replication Machinery Family AT1G79150 58.0 3.0e-245 845.1
Cme04g01735 . 1 939 Core DNA Replication Machinery Family AT1G44900 73.8 0.0e+00 1311.6
Cme08g00150 . 1 575 Core DNA Replication Machinery Family AT5G46280 80.7 3.0e-268 921.0
Cme01g01361 . 80 830 Core DNA Replication Machinery Family AT2G16440 77.5 0.0e+00 1146.7
Cme05g01856 . 1 742 Core DNA Replication Machinery Family AT2G07690 76.2 0.0e+00 1088.6
Cme08g00004 . 14 785 Core DNA Replication Machinery Family AT5G44635 69.1 0.0e+00 1094.7
Cme01g02199 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.1 0.0e+00 1217.6
Cme11g01369 . 12 458 Core DNA Replication Machinery Family AT2G29680 53.3 1.9e-136 483.0
Cme11g01369 . 22 427 Core DNA Replication Machinery Family AT1G07270 52.8 1.7e-120 429.9
Cme01g01799 . 1 593 Core DNA Replication Machinery Family AT3G25100 76.2 2.5e-257 884.8
Cme04g02557 . 12 792 Core DNA Replication Machinery Family AT3G09660 73.0 0.0e+00 1098.2
Cme01g00219 . 10 477 Core DNA Replication Machinery Family AT2G14050 76.8 2.9e-211 731.9
Cme01g02620 . 1 200 Core DNA Replication Machinery Family AT1G80190 66.3 4.0e-74 274.6
Cme07g01243 . 1 145 Core DNA Replication Machinery Family AT3G12530 71.0 2.7e-59 224.9
Cme03g00250 . 118 312 Core DNA Replication Machinery Family AT1G19080 54.0 2.5e-46 182.2
Cme03g00250 . 118 312 Core DNA Replication Machinery Family AT3G55490 54.0 2.5e-46 182.2
Cme06g00165 . 1 188 Core DNA Replication Machinery Family AT5G49010 55.3 3.3e-46 181.8
Cme11g00335 . 9 1546 Core DNA Replication Machinery Family AT5G67100 60.7 0.0e+00 1761.5
Cme12g01926 . 3 622 Core DNA Replication Machinery Family AT1G67630 62.3 5.3e-218 754.2
Cme11g02327 . 8 412 Core DNA Replication Machinery Family AT1G67320 64.3 9.1e-165 577.0
Cme09g00110 . 1 118 Core DNA Replication Machinery Family AT5G41880 75.4 1.9e-52 203.8
Cme08g01142 . 1 1086 Core DNA Replication Machinery Family AT5G63960 80.6 0.0e+00 1794.6
Cme04g02239 . 1 495 Core DNA Replication Machinery Family AT2G42120 55.3 4.4e-150 528.1
Cme11g02327 . 8 412 Core DNA Replication Machinery Family AT1G67320 64.3 9.1e-165 577.0
Cme09g01463 . 34 158 Core DNA Replication Machinery Family AT1G09815 60.8 6.3e-38 153.7
Cme11g01900 . 1 2095 Core DNA Replication Machinery Family AT1G08260 71.2 0.0e+00 2984.5
Cme09g00647 . 7 1305 Core DNA Replication Machinery Family AT1G08260 60.8 0.0e+00 1701.8
Cme11g01900 . 25 2206 Core DNA Replication Machinery Family AT2G27120 67.5 0.0e+00 2938.3
Cme09g00647 . 29 1305 Core DNA Replication Machinery Family AT2G27120 59.2 0.0e+00 1620.1
Cme12g02044 . 7 487 Core DNA Replication Machinery Family AT5G22110 68.9 1.4e-192 669.5
Cme05g00231 . 1 926 Core DNA Replication Machinery Family AT5G22010 64.0 2.1e-308 1055.0
Cme06g02668 . 1 331 Core DNA Replication Machinery Family AT1G63160 91.0 1.6e-173 605.5
Cme08g01938 . 1 354 Core DNA Replication Machinery Family AT5G27740 85.3 1.0e-178 622.9
Cme07g00817 . 1 290 Core DNA Replication Machinery Family AT1G21690 80.4 2.7e-128 455.3
Cme03g00527 . 39 254 Core DNA Replication Machinery Family AT1G77470 78.3 6.1e-89 324.7
Cme06g02413 . 32 705 Core DNA Replication Machinery Family AT2G06510 50.7 1.3e-197 686.4
Cme02g01827 . 1 634 Core DNA Replication Machinery Family AT5G08020 66.3 2.8e-240 828.2
Cme06g02413 . 10 814 Core DNA Replication Machinery Family AT5G45400 52.8 7.2e-234 807.4
Cme02g01827 . 1 629 Core DNA Replication Machinery Family AT5G61000 64.3 9.1e-234 806.6
Cme06g02413 . 5 800 Core DNA Replication Machinery Family AT4G19130 53.9 9.9e-230 793.5
Cme04g02390 . 37 142 Core DNA Replication Machinery Family AT4G18590 65.1 1.6e-37 152.1
Cme02g00001 . 1 377 Core DNA Replication Machinery Family AT5G26680 85.0 7.7e-181 630.2
Cme07g01888 . 8 297 Core DNA Replication Machinery Family AT2G25100 68.3 3.7e-115 411.4
Cme11g01841 . 1 849 Core DNA Replication Machinery Family AT1G08130 62.9 1.0e-287 986.1
Cme11g01841 . 201 849 Core DNA Replication Machinery Family AT1G49250 64.2 9.5e-234 806.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011182 1 1 1 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme08g00150 Cme_Chr08 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0