Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00160 ATGGCTGCCTCTACAATGGCTCTTTCTTCTCCATCTCTGGCCGGCAAGGCCGTGAAGCTCTCCCCCAATGCCCCTGAAATTCAGGGAACTGGAAGAATCACCATGAGGAAAACTGCCACCAAGCCAGTTTCCTCCGGCAGCCCATGGTACGGCCCCGACCGTGTCAAGTACTTGGGCCCATTCTCTGGTGAGCCACCATCCTACCTTACCGGAGAGTTCCCCGGTGACTACGGCTGGGACACTGCTGGACTTTCAGCTGATCCCGAGACCTTCGCCAAGAACCGTGAGTTGGAAGTGATCCACTCCAGATGGGCCATGCTTGGAGCTTTGGGGTGTGTCTTCCCTGAGCTTTTGTCTCGCAATGGTGTGAAGTTTGGTGAAGCTGTGTGGTTCAAGGCTGGATCACAGATCTTCAGCGAGGGCGGGCTTGACTACTTGGGCAACCCTAGCTTGGTCCACGCTCAGAGCATTTTGGCCATCTGGGCTTGCCAGGTTGTGTTGATGGGTGCCGTCGAGGGTTACCGTATTGCTGGCGGCCCACTCGGAGAGGTGACTGACCCCATCTACCCAGGTGGAAGCTTTGACCCATTGGGTTTGGCTGATGACCCAGAGGCCTTCGCTGAGTTGAAGGTTAAGGAGTTGAAGAATGGAAGGTTGGCTATGTTTTCCATGTTTGGATTCTTCGTTCAAGCCATTGTTACAGGAAAGGGTCCTTTGGAAAACTTGGCTGACCACCTTTCTGACCCAGTCAACAACAATGCTTGGGCATATGCCACAAACTTTGTTCCTGGAAAGTGA 798 53.88 MAASTMALSSPSLAGKAVKLSPNAPEIQGTGRITMRKTATKPVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWAYATNFVPGK 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1124451 1125615 - MELO3C032881.2.1 Cme08g00160 334423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00160 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
Cme08g00160 265 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 3, CHLOROPLASTIC 1 265 - -
Cme08g00160 265 Pfam Chlorophyll A-B binding protein 65 231 IPR022796 -
Cme08g00160 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 265 IPR001344 GO:0009765|GO:0016020
Cme08g00160 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00160 Cme-Chr8:1124451 Cme09g00132 Cme-Chr9:974790 7.86E-66 dispersed
Cme08g00160 Cme-Chr8:1124451 Cme08g00161 Cme-Chr8:1126903 0 tandem
Cme02g00798 Cme-Chr2:10216670 Cme08g00160 Cme-Chr8:1124451 7.26E-39 transposed
Cme04g01040 Cme-Chr4:14294453 Cme08g00160 Cme-Chr8:1124451 2.35E-170 transposed
Cme05g01586 Cme-Chr5:25072486 Cme08g00160 Cme-Chr8:1124451 3.95E-23 transposed
Cme06g02076 Cme-Chr6:26050222 Cme08g00160 Cme-Chr8:1124451 3.76E-119 transposed
Cme08g02519 Cme-Chr8:32104340 Cme08g00160 Cme-Chr8:1124451 5.32E-30 transposed
Cme12g01212 Cme-Chr12:20231593 Cme08g00160 Cme-Chr8:1124451 0 transposed
Cme01g00539 Cme-Chr1:4041354 Cme08g00160 Cme-Chr8:1124451 8.58E-150 transposed
Cme07g00015 Cme-Chr7:145825 Cme08g00160 Cme-Chr8:1124451 5.89E-32 transposed
Cme11g01575 Cme-Chr11:23355951 Cme08g00160 Cme-Chr8:1124451 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00160 K08912 - csv:101221671 530.02