Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00161 ATGAATCTGAAGCATTTGGTGGACGAGAAAGAGCCATGTAGGAATGCATCAAACAAAGGAAAAATCTTTGAACTCCAATGGGATTGCAGATACAGATACCAATGGATAAGAATCTGTTCTCTTTGCCCACTATTTAAACTCACCAAACCCACCAGTATCTTCCTCACCACAAAATACATTCCACCGTTGATCACAAGCCTTATTCCACCACCTCCAACAATGGCTGCTTCTACAATGGCTCTTTCCTCCCCATCTCTGGCCGGCAAAGCCGTGAAACTCTCCCCCAATGCCCCTGAAATTCAGGGAACTGGAAGAATCACCATGAGGAAAACTGCCACCAAGTCAGTTTCCTCCGGCAGCCCATGGTACGGCCCCGACCGTGTCAAATACTTGGGCCCATTCTCTGGTGAGCCACCATCCTACCTAACCGGAGAGTTCCCTGGTGACTACGGATGGGACACTGCTGGACTTTCAGCTGATCCCGAGACCTTCGCCAAGAACCGTGAGTTGGAAGTGATCCACTCCAGATGGGCCATGCTTGGAGCTTTGGGGTGCGTTTTCCCTGAGCTTTTGTCTCGCAATGGTGTGAAGTTCGGTGAAGCTGTGTGGTTCAAGGCTGGGTCTCAGATCTTCAGCGAAGGTGGGCTCGACTACTTGGGCAACCCCAGCTTGGTCCACGCTCAGAGCATTTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGTGCCGTCGAGGGTTACCGTATTGCCGGCGGCCCGCTCGGGGAGGTGACTGACCCCATCTACCCAGGTGGAAGCTTCGACCCATTGGGTTTGGCTGATGACCCAGAGGCCTTCGCTGAGTTGAAGGTTAAGGAGCTGAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGATTCTTTGTTCAGGCTATTGTTACTGGAAAGGGTCCATTGGAGAATTTGGCTGATCACCTTGCTGACCCAGTCAACAACAATGCTTGGGCCTACGCTACAAACTTTGTTCCTGGAAAGTGA 1017 51.33 MNLKHLVDEKEPCRNASNKGKIFELQWDCRYRYQWIRICSLCPLFKLTKPTSIFLTTKYIPPLITSLIPPPPTMAASTMALSSPSLAGKAVKLSPNAPEIQGTGRITMRKTATKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1126903 1128291 + MELO3C007154.2.1 Cme08g00161 334424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00161 338 SUPERFAMILY Chlorophyll a-b binding protein 121 335 - -
Cme08g00161 338 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 3, CHLOROPLASTIC 74 338 - -
Cme08g00161 338 Gene3D Chlorophyll a/b binding protein domain 129 331 - -
Cme08g00161 338 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 74 338 IPR001344 GO:0009765|GO:0016020
Cme08g00161 338 Pfam Chlorophyll A-B binding protein 138 304 IPR022796 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00539 Cme-Chr1:4041354 Cme08g00161 Cme-Chr8:1126903 2.07E-149 dispersed
Cme04g01040 Cme-Chr4:14294453 Cme08g00161 Cme-Chr8:1126903 3.70E-170 dispersed
Cme06g02076 Cme-Chr6:26050222 Cme08g00161 Cme-Chr8:1126903 2.06E-118 dispersed
Cme07g00015 Cme-Chr7:145825 Cme08g00161 Cme-Chr8:1126903 1.83E-31 dispersed
Cme08g00161 Cme-Chr8:1126903 Cme12g01212 Cme-Chr12:20231593 0 dispersed
Cme08g00160 Cme-Chr8:1124451 Cme08g00161 Cme-Chr8:1126903 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00161 K08912 - csv:101221671 533.102