Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00164 ATGTCGGATGAAATGTTTAAAGATTTATTTTATGGTGGGATGGATGAGTATGAGTCTATAGTGAGAGCTTTTGGAATAACATCGGATTATTCGAATAATAATAATGAAATATCGGGGACGACTGCAATGAATTCTTCTTGTTCGTTTTCATCTTCGGATGCTGGAGGAGGCGAGGACGATGATTCTGTGAAAGAGAAGGAGAAACATATCAGTAAAGATGTTGTGGAAGATAATGGAGGAGAGAATTCCAAGGCAGCTGGATCGGGTAAATCGAAGAAGAAAGGAGAGAAAAGAGAGAGAGAAGCGAGAGTCGCTTTCATGACAAAGAGTGAGGTTGATCATCTTGAAGATGGATATAGATGGAGAAAATATGGACAGAAGGCTGTCAAGAACAGTGCTTATCCTAGGAGCTATTACAGATGCACAACTCAAAAATGCGGAGTGAAAAAACGAGTAGAAAGATCCTACGAAGATCCATCCATTGTAATTACAACCTACGAAGGTCAACACAACCACCCAATTCCGGCGACATTAAGGGGGAACCTGTCGGCGGCCAGCGGGACATTTCCGCCGTCCATGCTGACGCCAATGCCTGTGGTCGGTGGCGTTGGGTTTCTGCCTGCAGAACTATTGAGCAATGCTTCCAGCAACAACCAAGCAGTCGGTGGCGGTGCCACGGTTTATTCACACAACAGCTTCGACTATACTTATAACGGTCGGCAACCGGAATATGGGCTTCTGCAGGATATTTTTCCGGCTCCGTCGTCGTTTTTCAACCGGCAGCCGTGA 789 45.37 MSDEMFKDLFYGGMDEYESIVRAFGITSDYSNNNNEISGTTAMNSSCSFSSSDAGGGEDDDSVKEKEKHISKDVVEDNGGENSKAAGSGKSKKKGEKREREARVAFMTKSEVDHLEDGYRWRKYGQKAVKNSAYPRSYYRCTTQKCGVKKRVERSYEDPSIVITTYEGQHNHPIPATLRGNLSAASGTFPPSMLTPMPVVGGVGFLPAELLSNASSNNQAVGGGATVYSHNSFDYTYNGRQPEYGLLQDIFPAPSSFFNRQP 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1148798 1150993 - MELO3C007157.2.1 Cme08g00164 334427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00164 262 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 29 253 IPR044810 GO:0003700
Cme08g00164 262 MobiDBLite consensus disorder prediction 35 102 - -
Cme08g00164 262 SMART WRKY_cls 115 174 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme08g00164 262 MobiDBLite consensus disorder prediction 35 55 - -
Cme08g00164 262 PANTHER WRKY TRANSCRIPTION FACTOR 28-RELATED 29 253 - -
Cme08g00164 262 Pfam WRKY DNA -binding domain 116 173 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme08g00164 262 MobiDBLite consensus disorder prediction 87 102 - -
Cme08g00164 262 Gene3D WRKY domain 100 176 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme08g00164 262 SUPERFAMILY WRKY DNA-binding domain 107 175 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme08g00164 262 MobiDBLite consensus disorder prediction 57 79 - -
Cme08g00164 262 ProSiteProfiles WRKY domain profile. 110 175 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01544 Cme-Chr1:20552695 Cme08g00164 Cme-Chr8:1148798 4.78E-58 dispersed
Cme01g02183 Cme-Chr1:30682504 Cme08g00164 Cme-Chr8:1148798 5.60E-42 dispersed
Cme03g01437 Cme-Chr3:23732372 Cme08g00164 Cme-Chr8:1148798 1.35E-43 dispersed
Cme04g01062 Cme-Chr4:14486628 Cme08g00164 Cme-Chr8:1148798 6.87E-34 dispersed
Cme06g00800 Cme-Chr6:5322743 Cme08g00164 Cme-Chr8:1148798 1.90E-37 dispersed
Cme07g01613 Cme-Chr7:21921994 Cme08g00164 Cme-Chr8:1148798 2.90E-31 dispersed
Cme08g00164 Cme-Chr8:1148798 Cme11g02090 Cme-Chr11:28560931 7.27E-46 dispersed
Cme11g01573 Cme-Chr11:23318618 Cme08g00164 Cme-Chr8:1148798 2.33E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41732 PF03106 WRKY 1.50E-25 CL0274 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00164 - - cmo:103484390 497.278