Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00190 ATGTTCCAGAATCAAGAAGAGAAGATGTCAGACTCGCCTCAGAGGAAGATGGGAAGAGGAAAGATTGAGATTAAGAGGATTGAAAATACAACAAATCGTCAAGTCACTTTCTGTAAGAGAAGGAATGGGTTGCTTAAAAAAGCTTATGAACTTTCTGTTCTTTGTGATGCTGAAGTTGCTCTCATCGTTTTCTCAAGCCGTGGCCGCCTCTATGAATATGCTAACAACAGTGTGAAGGCAACAATTGATAGATATAAGAAGGCATCCTCAGATTCCTCCAACACTGGATCTACTTCTGAAGCTAACACTCAGTTTTATCAACAAGAAGCTGCCAAACTCCGAGTTCAGATTGGTAACTTACAGAACTCAAACAGGAATATGCTAGGCGAGTCTCTAAGTTCTCTGACTGCCAAAGATCTGAAAGGCCTGGAGACCAAACTTGAGAAAGGAATTAGCAGAATTAGGTCCAAAAAGAATGAACTCCTGTTTGCTGAAATCGAGTATATGCGGAGAAGGGAAATTGATTTGCACAACAACAATCAGATGCTTCGAGCAAAGATAGCTGAGAGTGAAAGAAATGTGAACATGATGGGAGGAGAATTTGAGCTGATGCAATCTCATCCGTACGATCCAAGAGACTTCTTCCAAGTGAACGGCTTACAACATAATCATCAATATCCACGCCAAGACAACATGGCTCTTCAATTAGTATAA 714 40.76 MFQNQEEKMSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIDRYKKASSDSSNTGSTSEANTQFYQQEAAKLRVQIGNLQNSNRNMLGESLSSLTAKDLKGLETKLEKGISRIRSKKNELLFAEIEYMRRREIDLHNNNQMLRAKIAESERNVNMMGGEFELMQSHPYDPRDFFQVNGLQHNHQYPRQDNMALQLV 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1304027 1310615 - MELO3C007181.2.1 Cme08g00190 334453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00190 237 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Cme08g00190 237 ProSiteProfiles K-box domain profile. 103 193 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cme08g00190 237 Gene3D - 29 111 IPR036879 GO:0003677|GO:0046983
Cme08g00190 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Cme08g00190 237 CDD MADS_MEF2_like 18 94 IPR033896 GO:0000977|GO:0045944
Cme08g00190 237 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Cme08g00190 237 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Cme08g00190 237 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Cme08g00190 237 PANTHER FLORAL HOMEOTIC PROTEIN AGAMOUS-LIKE 17 226 - -
Cme08g00190 237 ProSitePatterns MADS-box domain signature. 19 73 IPR002100 GO:0003677|GO:0046983
Cme08g00190 237 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Cme08g00190 237 Coils Coil 140 160 - -
Cme08g00190 237 MobiDBLite consensus disorder prediction 1 21 - -
Cme08g00190 237 Pfam K-box region 99 187 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cme08g00190 237 PANTHER SERUM RESPONSE FACTOR HOMOLOG 17 226 - -
Cme08g00190 237 SUPERFAMILY SRF-like 18 92 IPR036879 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme08g00190 Cme12g01251 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g02236 Cme-Chr7:26497289 Cme08g00190 Cme-Chr8:1304027 8.01E-50 dispersed
Cme08g00190 Cme-Chr8:1304027 Cme11g02532 Cme-Chr11:31767647 4.84E-52 dispersed
Cme08g00712 Cme-Chr8:4739672 Cme08g00190 Cme-Chr8:1304027 1.58E-44 dispersed
Cme08g01507 Cme-Chr8:14420850 Cme08g00190 Cme-Chr8:1304027 1.87E-39 dispersed
Cme09g00026 Cme-Chr9:242885 Cme08g00190 Cme-Chr8:1304027 6.90E-38 transposed
Cme11g01551 Cme-Chr11:23043868 Cme08g00190 Cme-Chr8:1304027 1.92E-42 wgd
Cme12g01251 Cme-Chr12:20640594 Cme08g00190 Cme-Chr8:1304027 9.36E-106 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41733 PF01486 K-box 7.90E-28 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00190 K09264 - csv:101221430 457.603