Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00191 ATGAAGAATCCAGTGAAGTTTAAGTTGGGGAAACAGTCGTCTCTAGCGCCGGATGGAGATGGCCATCTCGAAGATTTGGAGGAGCTGGTCAAGCAGCACCAGACTGAGGAGGGGATAGATTCGAGGGTGAGGTTGATGTATTTGGCCAATGAAGGTGATTTGGAAGGGATTAATGAACTCTTGGATTCGGGAGTCGATGTTAATTTCCGTGATATCGACAACCGGACGGCTTTGCATATTGCTGCTTGCCAGGGATTTGCCGACGTTGTCGCTTTGTTGCTCGAACGTGGCGCTGAAGTTGACTCCAAAGATCGCTGGGGGAGCACGCCTCTTAGAGATGCTATCCATTACAAAAACCACGATGTGATCAAACTTCTGGAGAAGCATGGCGCAAAGCCTCCGGTGGCCCCCATGCTCGTCAAGAATGCCCGTGAAGTGCCAGATTATGAAATTGATCCTAAGGAACTTGATTTTACTAACAGCGTGAACATTACCAAGGGAACATTCCGCAGAGCATCTTGGCGTGGAACTGAGGTTGCTGTGAAAGAGCTTGGAGAAGATCTATTCACTGATGAGGATAAAGTGAGGGCTTTCAGAGATGAGCTTGCATTGCTTCAGAAAATACGGCACCCCAACGTTGTCCAGTTTCTAGGTGCTGTTACTCAAAGTTGGCCGATGATGATTGTTACTGAATATTTGCCAAAGGGAGATCTTGGAATATTATTGAGTAGAAAAAGAGAAATAAGAACACTGACTGTTGTGAGACTTGCCCTTGATATTGCAAGGGGGATGAACTACTTGCATGAGAACAAGCCAGCACCCATTATTCATCGTAATCTTGAGCCTTCAAATATTCTGAGGGATGATTCTGGCCACCTGAAAGTAGCAGACTTTGGAGTTAGCAAGTTATTGACGGTTAAAGAAGATAAACTTTCGACTTGTTCAGAGACTTCACGAAGATACCAAGCTCCAGAGGTTTTCAAAAATGAAGAATATGACACAAAGGTGGACGTGTTTTCATTTGCTTTGATTTTACAAGAGATGCTTGAAGGCTGTCCTCCATTTCCTGACAACGCAGATAGTGAAGTTCCTAAATTGTACGCAGCTGGAGAACGTCCCCCATTTATAGCACTACTTAATAAACGTTACGCAAATGGACTAAAAGAGCTAATTGAAGAATGTTGGAACGAGAAGCCAAATAAGAGACCAACTTTTAGGCAGATAATAACCCAGCTGGAATTCATTTACAACAGATTCTGTCATAAGAGGCGCTGGAAGGTCAGGCCATTGAAATGCTTTCAGAATATTGAGGCAATGCTGAAGAAAGATCGTCTCCGTCGAAGCAGTTTCAATCTATCGTCACATTCTTCTGCCAGCAGTATTTGA 1386 44.16 MKNPVKFKLGKQSSLAPDGDGHLEDLEELVKQHQTEEGIDSRVRLMYLANEGDLEGINELLDSGVDVNFRDIDNRTALHIAACQGFADVVALLLERGAEVDSKDRWGSTPLRDAIHYKNHDVIKLLEKHGAKPPVAPMLVKNAREVPDYEIDPKELDFTNSVNITKGTFRRASWRGTEVAVKELGEDLFTDEDKVRAFRDELALLQKIRHPNVVQFLGAVTQSWPMMIVTEYLPKGDLGILLSRKREIRTLTVVRLALDIARGMNYLHENKPAPIIHRNLEPSNILRDDSGHLKVADFGVSKLLTVKEDKLSTCSETSRRYQAPEVFKNEEYDTKVDVFSFALILQEMLEGCPPFPDNADSEVPKLYAAGERPPFIALLNKRYANGLKELIEECWNEKPNKRPTFRQIITQLEFIYNRFCHKRRWKVRPLKCFQNIEAMLKKDRLRRSSFNLSSHSSASSI 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1316654 1321527 - MELO3C007182.2.1 Cme08g00191 334454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00191 461 Gene3D Transferase(Phosphotransferase) domain 1 234 456 - -
Cme08g00191 461 SUPERFAMILY Protein kinase-like (PK-like) 167 416 IPR011009 -
Cme08g00191 461 PIRSF ILK 2 435 - -
Cme08g00191 461 ProSiteProfiles Ankyrin repeat region circular profile. 73 105 - -
Cme08g00191 461 SMART ANK_2a 106 135 IPR002110 GO:0005515
Cme08g00191 461 SMART ANK_2a 40 69 IPR002110 GO:0005515
Cme08g00191 461 SMART ANK_2a 73 102 IPR002110 GO:0005515
Cme08g00191 461 ProSiteProfiles Protein kinase domain profile. 123 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g00191 461 Gene3D Phosphorylase Kinase; domain 1 150 233 - -
Cme08g00191 461 MobiDBLite consensus disorder prediction 1 20 - -
Cme08g00191 461 Pfam Protein tyrosine and serine/threonine kinase 163 412 IPR001245 GO:0004672|GO:0006468
Cme08g00191 461 ProSiteProfiles Ankyrin repeat profile. 40 72 IPR002110 GO:0005515
Cme08g00191 461 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 8 443 - -
Cme08g00191 461 CDD STKc_MAP3K-like 164 412 - -
Cme08g00191 461 ProSiteProfiles Ankyrin repeat profile. 73 105 IPR002110 GO:0005515
Cme08g00191 461 SUPERFAMILY Ankyrin repeat 21 134 IPR036770 -
Cme08g00191 461 Pfam Ankyrin repeats (3 copies) 45 133 IPR002110 GO:0005515
Cme08g00191 461 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE ISOFORM X1 8 443 - -
Cme08g00191 461 Gene3D - 18 146 IPR036770 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme08g00191 Cme12g01253 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00191 Cme-Chr8:1316654 Cme10g00387 Cme-Chr10:2488737 1.60E-103 dispersed
Cme11g01009 Cme-Chr11:14508800 Cme08g00191 Cme-Chr8:1316654 8.87E-10 transposed
Cme11g01546 Cme-Chr11:22963155 Cme08g00191 Cme-Chr8:1316654 0 wgd
Cme12g01253 Cme-Chr12:20660326 Cme08g00191 Cme-Chr8:1316654 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65045 PF07714 PK_Tyr_Ser-Thr 6.50E-53 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00191 - - csv:101215728 870.152