Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme08g00191 | ATGAAGAATCCAGTGAAGTTTAAGTTGGGGAAACAGTCGTCTCTAGCGCCGGATGGAGATGGCCATCTCGAAGATTTGGAGGAGCTGGTCAAGCAGCACCAGACTGAGGAGGGGATAGATTCGAGGGTGAGGTTGATGTATTTGGCCAATGAAGGTGATTTGGAAGGGATTAATGAACTCTTGGATTCGGGAGTCGATGTTAATTTCCGTGATATCGACAACCGGACGGCTTTGCATATTGCTGCTTGCCAGGGATTTGCCGACGTTGTCGCTTTGTTGCTCGAACGTGGCGCTGAAGTTGACTCCAAAGATCGCTGGGGGAGCACGCCTCTTAGAGATGCTATCCATTACAAAAACCACGATGTGATCAAACTTCTGGAGAAGCATGGCGCAAAGCCTCCGGTGGCCCCCATGCTCGTCAAGAATGCCCGTGAAGTGCCAGATTATGAAATTGATCCTAAGGAACTTGATTTTACTAACAGCGTGAACATTACCAAGGGAACATTCCGCAGAGCATCTTGGCGTGGAACTGAGGTTGCTGTGAAAGAGCTTGGAGAAGATCTATTCACTGATGAGGATAAAGTGAGGGCTTTCAGAGATGAGCTTGCATTGCTTCAGAAAATACGGCACCCCAACGTTGTCCAGTTTCTAGGTGCTGTTACTCAAAGTTGGCCGATGATGATTGTTACTGAATATTTGCCAAAGGGAGATCTTGGAATATTATTGAGTAGAAAAAGAGAAATAAGAACACTGACTGTTGTGAGACTTGCCCTTGATATTGCAAGGGGGATGAACTACTTGCATGAGAACAAGCCAGCACCCATTATTCATCGTAATCTTGAGCCTTCAAATATTCTGAGGGATGATTCTGGCCACCTGAAAGTAGCAGACTTTGGAGTTAGCAAGTTATTGACGGTTAAAGAAGATAAACTTTCGACTTGTTCAGAGACTTCACGAAGATACCAAGCTCCAGAGGTTTTCAAAAATGAAGAATATGACACAAAGGTGGACGTGTTTTCATTTGCTTTGATTTTACAAGAGATGCTTGAAGGCTGTCCTCCATTTCCTGACAACGCAGATAGTGAAGTTCCTAAATTGTACGCAGCTGGAGAACGTCCCCCATTTATAGCACTACTTAATAAACGTTACGCAAATGGACTAAAAGAGCTAATTGAAGAATGTTGGAACGAGAAGCCAAATAAGAGACCAACTTTTAGGCAGATAATAACCCAGCTGGAATTCATTTACAACAGATTCTGTCATAAGAGGCGCTGGAAGGTCAGGCCATTGAAATGCTTTCAGAATATTGAGGCAATGCTGAAGAAAGATCGTCTCCGTCGAAGCAGTTTCAATCTATCGTCACATTCTTCTGCCAGCAGTATTTGA | 1386 | 44.16 | MKNPVKFKLGKQSSLAPDGDGHLEDLEELVKQHQTEEGIDSRVRLMYLANEGDLEGINELLDSGVDVNFRDIDNRTALHIAACQGFADVVALLLERGAEVDSKDRWGSTPLRDAIHYKNHDVIKLLEKHGAKPPVAPMLVKNAREVPDYEIDPKELDFTNSVNITKGTFRRASWRGTEVAVKELGEDLFTDEDKVRAFRDELALLQKIRHPNVVQFLGAVTQSWPMMIVTEYLPKGDLGILLSRKREIRTLTVVRLALDIARGMNYLHENKPAPIIHRNLEPSNILRDDSGHLKVADFGVSKLLTVKEDKLSTCSETSRRYQAPEVFKNEEYDTKVDVFSFALILQEMLEGCPPFPDNADSEVPKLYAAGERPPFIALLNKRYANGLKELIEECWNEKPNKRPTFRQIITQLEFIYNRFCHKRRWKVRPLKCFQNIEAMLKKDRLRRSSFNLSSHSSASSI | 461 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 1316654 | 1321527 | - | MELO3C007182.2.1 | Cme08g00191 | 334454 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme08g00191 | 461 | Gene3D | Transferase(Phosphotransferase) domain 1 | 234 | 456 | - | - | |
Cme08g00191 | 461 | SUPERFAMILY | Protein kinase-like (PK-like) | 167 | 416 | IPR011009 | - | |
Cme08g00191 | 461 | PIRSF | ILK | 2 | 435 | - | - | |
Cme08g00191 | 461 | ProSiteProfiles | Ankyrin repeat region circular profile. | 73 | 105 | - | - | |
Cme08g00191 | 461 | SMART | ANK_2a | 106 | 135 | IPR002110 | GO:0005515 | |
Cme08g00191 | 461 | SMART | ANK_2a | 40 | 69 | IPR002110 | GO:0005515 | |
Cme08g00191 | 461 | SMART | ANK_2a | 73 | 102 | IPR002110 | GO:0005515 | |
Cme08g00191 | 461 | ProSiteProfiles | Protein kinase domain profile. | 123 | 415 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme08g00191 | 461 | Gene3D | Phosphorylase Kinase; domain 1 | 150 | 233 | - | - | |
Cme08g00191 | 461 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cme08g00191 | 461 | Pfam | Protein tyrosine and serine/threonine kinase | 163 | 412 | IPR001245 | GO:0004672|GO:0006468 | |
Cme08g00191 | 461 | ProSiteProfiles | Ankyrin repeat profile. | 40 | 72 | IPR002110 | GO:0005515 | |
Cme08g00191 | 461 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 8 | 443 | - | - | |
Cme08g00191 | 461 | CDD | STKc_MAP3K-like | 164 | 412 | - | - | |
Cme08g00191 | 461 | ProSiteProfiles | Ankyrin repeat profile. | 73 | 105 | IPR002110 | GO:0005515 | |
Cme08g00191 | 461 | SUPERFAMILY | Ankyrin repeat | 21 | 134 | IPR036770 | - | |
Cme08g00191 | 461 | Pfam | Ankyrin repeats (3 copies) | 45 | 133 | IPR002110 | GO:0005515 | |
Cme08g00191 | 461 | PANTHER | SERINE/THREONINE-PROTEIN KINASE HT1-LIKE ISOFORM X1 | 8 | 443 | - | - | |
Cme08g00191 | 461 | Gene3D | - | 18 | 146 | IPR036770 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cme08g00191 | Cme12g01253 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme08g00191 | Cme-Chr8:1316654 | Cme10g00387 | Cme-Chr10:2488737 | 1.60E-103 | dispersed | |
Cme11g01009 | Cme-Chr11:14508800 | Cme08g00191 | Cme-Chr8:1316654 | 8.87E-10 | transposed | |
Cme11g01546 | Cme-Chr11:22963155 | Cme08g00191 | Cme-Chr8:1316654 | 0 | wgd | |
Cme12g01253 | Cme-Chr12:20660326 | Cme08g00191 | Cme-Chr8:1316654 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65045 | PF07714 | PK_Tyr_Ser-Thr | 6.50E-53 | CL0016 | Cme | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme08g00191 | - | - | csv:101215728 | 870.152 |