Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00198 ATGGCTGAGATTTCAGGATCAAGCAATGGACATCATTCTGTTTCTTTGAACATCAAAGATGAATCCACCGCCATCACCAGCAGAGAAGTAGCAGCTGAATGGGTTTCTGTATCTTTCATTCAAAAGTTGATTGCTGAGATTGTGGGGACATATTTCTTGATTTTTGCTGGTGGGGCATCAGTGGTTGTGAATTTGAGCAAAGACAAAGTCATCACTTTCCCAGGGATTTCAATTGTTTGGGGTTTGGTTGTAATGGTGATGGTTTATTCTGTTGGTCATATATCTGGTGCTCATTTCAACCCTGCTGTTACCATAGCCTTTGCCACTACCAAGAGATTTCCATGGAAACAGGTGCCAGCTTATGTGATGTCTCAAGTTCTTGGATCAACATTGGCAGCTGGGACACTTAGGCTAATATTTAATGGACACGAAGATCACTTTTCAGGGACACTCCCAAGTGATTCATATTTGCAAACCTTTGTGATTGAATTCATCATCACATTTTATCTCATGTTTGTAGTGTCTGGTGTTGCCACTGACAACAGAGCTATTGGTGAACTTGCTGGACTTGCTGTTGGTGCTACTGTTCTTCTCAACGTTATGTTTGCAGGGCCAATTACAGGAGCATCCATGAATCCAGCCAGAAGTTTGGGACCTGCTATAGTATCAAGGCAATTCAAAGGGTTATGGATATACATTGTAGCTCCCATTTTTGGTGCAATTACAGGTGCTTTGGTTTACAATACAATCAGGTTCACTGACAAGCCTCTACGAGAGATCACTAAAAGTGCTTCTTTTCTCAAAGGACAAAGTCGCAGAGTTAAAGAAGATGGCATTACTCAAATTGTTATAGTTTTAGTCTTAGTTTATCCAAAAAACATGGACACGAACAACGTCCTTACTTCACATGAAACTAGGTTAATGTCGGGAATCACGAGTAAAACTAAGAATAAACTACATATGGATAAGGATAAGTCCAAACTTCTTGATGGCTGCCTGCTAGTTCACATGAATCCTGTTCGTTAA 1026 40.45 MAEISGSSNGHHSVSLNIKDESTAITSREVAAEWVSVSFIQKLIAEIVGTYFLIFAGGASVVVNLSKDKVITFPGISIVWGLVVMVMVYSVGHISGAHFNPAVTIAFATTKRFPWKQVPAYVMSQVLGSTLAAGTLRLIFNGHEDHFSGTLPSDSYLQTFVIEFIITFYLMFVVSGVATDNRAIGELAGLAVGATVLLNVMFAGPITGASMNPARSLGPAIVSRQFKGLWIYIVAPIFGAITGALVYNTIRFTDKPLREITKSASFLKGQSRRVKEDGITQIVIVLVLVYPKNMDTNNVLTSHETRLMSGITSKTKNKLHMDKDKSKLLDGCLLVHMNPVR 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1344229 1346310 - MELO3C007188.2.1 Cme08g00198 334461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00198 341 ProSitePatterns MIP family signature. 98 106 IPR022357 -
Cme08g00198 341 PANTHER AQUAPORIN NIP2-1 1 269 IPR034294 -
Cme08g00198 341 TIGRFAM MIP: MIP family channel proteins 45 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g00198 341 Gene3D Glycerol uptake facilitator protein. 5 262 IPR023271 -
Cme08g00198 341 PRINTS Major intrinsic protein family signature 162 180 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g00198 341 PRINTS Major intrinsic protein family signature 230 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g00198 341 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g00198 341 PRINTS Major intrinsic protein family signature 193 215 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g00198 341 PRINTS Major intrinsic protein family signature 41 60 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g00198 341 PRINTS Major intrinsic protein family signature 117 136 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g00198 341 PANTHER AQUAPORIN NIP1-1-RELATED 1 269 - -
Cme08g00198 341 SUPERFAMILY Aquaporin-like 34 261 IPR023271 -
Cme08g00198 341 CDD MIP 41 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g00198 341 Pfam Major intrinsic protein 33 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01979 Cme-Chr4:27419251 Cme08g00198 Cme-Chr8:1344229 4.69E-75 dispersed
Cme04g01980 Cme-Chr4:27451553 Cme08g00198 Cme-Chr8:1344229 2.45E-76 dispersed
Cme06g01482 Cme-Chr6:14138665 Cme08g00198 Cme-Chr8:1344229 1.53E-105 dispersed
Cme08g00198 Cme-Chr8:1344229 Cme09g01912 Cme-Chr9:23251798 6.98E-72 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00198 K09874 - csv:101219297 511.916