Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme08g00207 | ATGATGTCCAAATCGTATACCAATCTTTTAGATTTAGCTTCTGGGAATTTTCCCATTATGGGTCGCGAGAAGAAGCGACTTCCACGAGTAATGACTGTTGCGGGGGTAATATCAGAGCTTGATGATGATCAGGCAAATAGTGTGACTTCTGAGGGACCTTCGTCAGTTGTGCAAGACCGAATAATTATTGTTGCCAATCAGCTTCCTATTAAAGCTAAGCGTAGACCGGACAATAAAGGCTGGAGTTTTAGTTGGGATGAAGACTCTTTGCTGTGGCAGCTTAAGGATGGTTTACCTGAAGATATGGAGGTTTTGTATGTAGGATCTTTGCGGGTGGATGTTGATTCTTCCGAACAAGAAGATGTATCGCAGCTTTTGTTGGAGAGGTTTAAGTGTGTTCCAGCGTTTTTACCTCATGACATTTTATCTAAATTTTATCATGGTTTTTGTAAGCAGCAATTGTGGCCACTCTTTCATTATATGCTTCCGTTCTCTGCAACTCATGGTGGTCGATTTGATCGCTCTCTGTGGGAGGCATATGTAGCAGCAAATAAAATTTTTTCTCAAAGGGTGATCGAGGTCATAAACCCAGATGACGACTTTGTATGGATTCATGATTATCATCTAATGGTGCTACCCTCCTTCTTGAGGAGAAGGTTTACAAGACTGAGAATGGGCTTTTTTCTTCACAGTCCATTTCCTTCATCAGAAATATATAGGACATTGCCAGTGAGGGAAGAGATTCTTAAGGCACTTTTGAATGCAGACCTTATTGGTTTTCACACTTTTGACTATGCTCGACATTTCCTGTCTTGTTGTAGTCGGATGTTGGGTTTGGAATATCAGTCAAAGAGGGGTTATATTGGCTTGGAATATTTTGGAAGGACCGTGGGGATAAAAATCATGCCTGTTGGAATTCACATGGGCCAGATGGAATCGGTGCTAAGACTTGCTGACAAGGACTGGAGGGTACAGGAGCTCAAGCGACAGTTTGAAGGAAAAGTTGTGTTACTTGGAGTTGATGATATGGATATTTTTAAAGGGGTCAATCTGAAGTTGTTGGCAATGGAACAGATGTTGCGGCAACATCCAAAGTGGCAGGGAAGAGCTGTTTTCATACAGATTGCAAACCCAGCTAGAGGAAGAGGGAAAGATCTCGAGGAAATACAAGATGAAATACAGGAATGCTGCCAGAGGATTAATGAAAATTTTGGACAGCCAAATTATGAGCCAATTGTGTTCATTGATCGGCCTGTTTCTCTCGCTGAAAGAGCGGCATATTATACGATTGCCGAATGTGTTGTAGTCACAGCGGTGAGGGATGGTATGAACCTAACTCCTTATGAGTACGTTGTCTGCAGGCAGGGAACCTCTGGATCAGAATATAGCACAGAAACAAATGGACCACAAAAGAGCATGCTAGTCATATCAGAGTTCATGGGATGTTCCCCTTCTCTTAGTGGGGCAATACGGGTTAACCCATGGAACATTGAAGCCACTGCTGAAGCATTGAATGAGGCAATATCAATGGCTGAAGCTGAAAAGCAACTGCGCCACGAGAAGCATTACAAATATGTGAGTACACATGATGTGGCGTACTGGTCAAGGAGTTTTTTCCAAGACATGGAAAGAACTTGCAAGGATCACTTTAGAAGACGGTGCTGGGGAATTGGGTTGGGCTTTGGTTTCAGGGTTGTAGCACTCGATCCTAACTTTAGAAAGCTATCTATTGATGCCATTGTAGCTGCATATTCGAGGTCTAAAAAGAGGGCTATACTTTTGGATTATGATGGCACTGTCATGCCGCAAACTTCAATTGATAAGACCCCAAGTCGTCAGGTGATTTCAATCATAGATTCACTGTGTGATGATGTTAGGAATACTGTTTTTGTTGTCAGTGGAAGAGGGCGTGAAAGTTTGGGCAATTGGTTCTCTTCTTGCGATAAGCTTGGAATTGCTGCCGAGCATGGCTATTTTATGAGGTGGTCTGCTGATAAGGACTGGGAAAATTGTGGTCAAGGTAGTGATTTTGGCTGGATACAGATTGCAGAGCCAGTCATGAAATTATATACAGAAGCTACTGATGGCTCTTCTATTGAAACCAAAGAAAGTGCCTTGGTGTGGCATCACCAGGATGCAGACCCTGATTTTGGTTGCAGCCAGGCGAAAGAATTATTGGATCACCTTGAAAGTGTGCTGGCAAATGAACCAGTTGCTGTAAAAAGTGGTCAGTTTATTGTAGAAGTGAAGCCACAGGGAGTCAGTAAAGGTTTGGTGGCAGAAAAGATCTTCACGTCAATGGCAGAAGCAGGAAGACGGGCTGATTTTGTGCTATGCATTGGTGATGACAGATCTGATGAAGACATGTTTGAGATAATTGGTAATGCAGTGTCAAGTGGCTCCCTCTCTTCCAATACATTAGTTTTTGCCTGCACGGTTGGACAGAAACCAAGCAAGGCCAAGTATTACTTAGATGACACAACCGAGGTCATTAATATGCTTGAAGCCCTTGCAGAAGTTTCGGACATATCTTCTCCTCCTGAATCCCCTTGA | 2553 | 42.97 | MMSKSYTNLLDLASGNFPIMGREKKRLPRVMTVAGVISELDDDQANSVTSEGPSSVVQDRIIIVANQLPIKAKRRPDNKGWSFSWDEDSLLWQLKDGLPEDMEVLYVGSLRVDVDSSEQEDVSQLLLERFKCVPAFLPHDILSKFYHGFCKQQLWPLFHYMLPFSATHGGRFDRSLWEAYVAANKIFSQRVIEVINPDDDFVWIHDYHLMVLPSFLRRRFTRLRMGFFLHSPFPSSEIYRTLPVREEILKALLNADLIGFHTFDYARHFLSCCSRMLGLEYQSKRGYIGLEYFGRTVGIKIMPVGIHMGQMESVLRLADKDWRVQELKRQFEGKVVLLGVDDMDIFKGVNLKLLAMEQMLRQHPKWQGRAVFIQIANPARGRGKDLEEIQDEIQECCQRINENFGQPNYEPIVFIDRPVSLAERAAYYTIAECVVVTAVRDGMNLTPYEYVVCRQGTSGSEYSTETNGPQKSMLVISEFMGCSPSLSGAIRVNPWNIEATAEALNEAISMAEAEKQLRHEKHYKYVSTHDVAYWSRSFFQDMERTCKDHFRRRCWGIGLGFGFRVVALDPNFRKLSIDAIVAAYSRSKKRAILLDYDGTVMPQTSIDKTPSRQVISIIDSLCDDVRNTVFVVSGRGRESLGNWFSSCDKLGIAAEHGYFMRWSADKDWENCGQGSDFGWIQIAEPVMKLYTEATDGSSIETKESALVWHHQDADPDFGCSQAKELLDHLESVLANEPVAVKSGQFIVEVKPQGVSKGLVAEKIFTSMAEAGRRADFVLCIGDDRSDEDMFEIIGNAVSSGSLSSNTLVFACTVGQKPSKAKYYLDDTTEVINMLEALAEVSDISSPPESP | 850 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 1392770 | 1398577 | - | MELO3C007197.2.1 | Cme08g00207 | 334470 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme08g00207 | 850 | Gene3D | Glycogen Phosphorylase B; | 321 | 528 | - | - | |
| Cme08g00207 | 850 | CDD | GT20_TPS | 60 | 543 | IPR001830 | GO:0003824|GO:0005992 | |
| Cme08g00207 | 850 | CDD | HAD_TPP | 591 | 832 | - | - | |
| Cme08g00207 | 850 | Pfam | Trehalose-phosphatase | 593 | 827 | IPR003337 | GO:0003824|GO:0005992 | |
| Cme08g00207 | 850 | Gene3D | - | 589 | 695 | IPR023214 | - | |
| Cme08g00207 | 850 | Gene3D | - | 719 | 845 | IPR023214 | - | |
| Cme08g00207 | 850 | Pfam | Glycosyltransferase family 20 | 60 | 543 | IPR001830 | GO:0003824|GO:0005992 | |
| Cme08g00207 | 850 | PANTHER | TREHALOSE-6-PHOSPHATE SYNTHASE | 1 | 842 | IPR001830 | GO:0003824|GO:0005992 | |
| Cme08g00207 | 850 | SUPERFAMILY | UDP-Glycosyltransferase/glycogen phosphorylase | 59 | 547 | - | - | |
| Cme08g00207 | 850 | Gene3D | Glycogen Phosphorylase B; | 50 | 320 | - | - | |
| Cme08g00207 | 850 | SUPERFAMILY | HAD-like | 590 | 838 | IPR036412 | - | |
| Cme08g00207 | 850 | TIGRFAM | HAD-SF-IIB: HAD hydrolase, family IIB | 592 | 798 | IPR006379 | - | |
| Cme08g00207 | 850 | PANTHER | ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 7-RELATED | 1 | 842 | - | - | |
| Cme08g00207 | 850 | TIGRFAM | T6PP: trehalose-phosphatase | 587 | 838 | IPR003337 | GO:0003824|GO:0005992 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme01g00311 | Cme-Chr1:2318897 | Cme08g00207 | Cme-Chr8:1392770 | 0 | dispersed | |
| Cme02g01956 | Cme-Chr2:25829505 | Cme08g00207 | Cme-Chr8:1392770 | 0 | dispersed | |
| Cme06g02456 | Cme-Chr6:31591146 | Cme08g00207 | Cme-Chr8:1392770 | 0 | dispersed | |
| Cme08g00207 | Cme-Chr8:1392770 | Cme12g01248 | Cme-Chr12:20614503 | 2.76E-128 | dispersed | |
| Cme08g00781 | Cme-Chr8:5206986 | Cme08g00207 | Cme-Chr8:1392770 | 9.69E-11 | dispersed | |
| Cme08g00207 | Cme-Chr8:1392770 | Cme10g00508 | Cme-Chr10:3271116 | 0 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme08g00207 | K16055 | - | csv:101213082 | 1699.1 |