Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00216 ATGGAAGTTGTAAAAGTAGCTCTGCTACTATTCTTCTTCATCGTGGTGGTCTCTGCCTCAGACAGTCATTTGTCTCCCAAAGGAGTAAACTATGAAGTGGCGGCTTTGATGTCAATGAAGAGCAGGATAAAGGACGAGCGGAGAGTGATGCAAGGATGGGACATAAATTCGGTTGATCCATGCACCTGGAATATGGTTGCTTGCTCTGCTGAGGGATTTGTGATTTCTCTCGAGATGCCAAATATGGGTTTATCTGGAACGCTTTCCCCTAGCATTGGGAACCTGAGTCATCTTAGGATAATGTTGTTGCAAAACAATGAGTTATCTGGTCCAATTCCCGATGATATAGGAGCTCTTTCAGAGCTTCAGACTCTTGACCTTTCTAACAACCAGGATTTATCGAATAATAATCTCAGTGGTCCAACTCCAAGAATACTTGCGAAAGAGTACAGTGCAGTTCCGAAGCCAGTTAATGAAACTGGTTCGTCTCAAAAAGATAATGGCCGCCATCACTTGGTTCTTTACATAGCTCTAATTGTTAGTTTCACATTTGTGGTTTCTGTTGTGTTACTTGTTGGCTGGGTGCATTGGTATAGATCTCATCTTGTCTTCACATCCTACGTGCAGCAAGATTATGAATTTGATATAGGTCACCTGAAAAGGTTTACATTCCGTGAGCTACAAAAGGCGACAAGTAATTTTAGTCCCCAAAACATCCTGGGACAGGGTGGTTTTGGAGTAGTTTATAAAGCTTGTCTTCCAAATGGGACGTATGTTGCTGTCAAGAGACTGAAAGATCCGAATTACACTGGAGAAGTGCAGTTTCAAACTGAAGTTGAAATGATTGGTTTAGCAGTGCACCGCAACCTCTTACGTTTGTATGGCTTTTGTATGACCCCAGATGAGAGATTGCTGGTTTATCCTTTTATGCCCAATGGGAGTGTTGCTGACCGTCTTAGAGATGCAGGCCAAGAGAAGCCTTCATTGAATTGGAACAGAAGATTGCGTATTGCCCTTGGCGCAGCACGTGGACTTCTATACCTACATGAGCAGTGTAACCCAAAAATTATTCACCGGGATGTGAAAGCTGCAAATATTCTTCTAGATGAAAGCTTTGAAGCTGTGGTCGGCGATTTTGGTCTGGCAAAGATGTTAGATAGGAGAGATTCACATGTTACTACTGCAGTTAGAGGCACAGTGGGACATATTGCCCCGGAATATCTTTCAACTGGACAATCTTCAGAAAAGACTGATGTTTTTGGATTTGGCATATTGGTTCTTGAACTCTTGACAGGGCAAAAAGCACTTGATGCTGGTAATGGTCAAATTCGAAAGGGAATGATCCTCGAATGGGTTAGAACATTACATGAGGAGGAGAGGTTAGATGTGCTGGTGGACAGGGATCTTAAAGGATGTTTTGATGCAATGGAGCTTGAAAAATGTGTTGAGTTGGCTCTGCAGTGTACTCAATCACATCCACAACTTCGACCAAAGATGTCTGACATCTTGAAGATTCTAGAAGGTCTAGTTGGACAGTCTAGCCAAATGGAGGAATCACCAGTTGGAGCAAGTCTTTATGAAGATAGAGCTCACAGTTTCTCAAGAAATTACAGTGATATTCATGAAGAATCTTCATTTGTGGTCGAAGCCATGGAGCTTTCAGGACCTCGGTGA 1674 42.65 MEVVKVALLLFFFIVVVSASDSHLSPKGVNYEVAALMSMKSRIKDERRVMQGWDINSVDPCTWNMVACSAEGFVISLEMPNMGLSGTLSPSIGNLSHLRIMLLQNNELSGPIPDDIGALSELQTLDLSNNQDLSNNNLSGPTPRILAKEYSAVPKPVNETGSSQKDNGRHHLVLYIALIVSFTFVVSVVLLVGWVHWYRSHLVFTSYVQQDYEFDIGHLKRFTFRELQKATSNFSPQNILGQGGFGVVYKACLPNGTYVAVKRLKDPNYTGEVQFQTEVEMIGLAVHRNLLRLYGFCMTPDERLLVYPFMPNGSVADRLRDAGQEKPSLNWNRRLRIALGAARGLLYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKMLDRRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILVLELLTGQKALDAGNGQIRKGMILEWVRTLHEEERLDVLVDRDLKGCFDAMELEKCVELALQCTQSHPQLRPKMSDILKILEGLVGQSSQMEESPVGASLYEDRAHSFSRNYSDIHEESSFVVEAMELSGPR 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1448170 1454038 - MELO3C007206.2.1 Cme08g00216 334479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00216 557 ProSiteProfiles Protein kinase domain profile. 234 510 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g00216 557 SUPERFAMILY L domain-like 31 147 - -
Cme08g00216 557 Gene3D Transferase(Phosphotransferase) domain 1 310 519 - -
Cme08g00216 557 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 132 557 - -
Cme08g00216 557 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 9 131 - -
Cme08g00216 557 Gene3D Phosphorylase Kinase; domain 1 204 309 - -
Cme08g00216 557 SUPERFAMILY Protein kinase-like (PK-like) 218 533 IPR011009 -
Cme08g00216 557 ProSitePatterns Protein kinases ATP-binding region signature. 240 262 IPR017441 GO:0005524
Cme08g00216 557 ProSitePatterns Serine/Threonine protein kinases active-site signature. 356 368 IPR008271 GO:0004672|GO:0006468
Cme08g00216 557 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 9 131 - -
Cme08g00216 557 Gene3D Ribonuclease Inhibitor 28 151 IPR032675 -
Cme08g00216 557 SMART serkin_6 234 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g00216 557 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 132 557 - -
Cme08g00216 557 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
Cme08g00216 557 Pfam Protein kinase domain 237 504 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00236 Cme-Chr5:1703164 Cme08g00216 Cme-Chr8:1448170 5.93E-34 dispersed
Cme05g00644 Cme-Chr5:6862789 Cme08g00216 Cme-Chr8:1448170 4.75E-16 dispersed
Cme08g00216 Cme-Chr8:1448170 Cme10g00319 Cme-Chr10:2096713 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65046 PF00069 Pkinase 2.30E-44 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00216 - - mcha:111012268 965.681