Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00224 ATGGCTGAGGTTCATAGTAGCAACGCCGATGGAATTAAACTTTTTGGCACCATGATTCATTTACAAACACGAAAATTGAAGGAAGAACCGGAGAAAGGCGGACCGGTCGCCGGCGGTGGTGAAGGTGATGAAACAGAGATGAAGAGACCGGAAAAAATTATTCCATGTCCAAGATGTAAGAGTATGGACACCAAATTCTGTTACTTCAACAATTACAATGTTAATCAGCCCAGACATTTCTGCAAGGGTTGTCAAAGGTACTGGACGGCCGGTGGGGCGCTCCGGAACGTACCCATCGGAGCTGGTCGTCGTAGAGCCAAGCCGCCGCCTAATTGCCGGACCCTTTCCGGCGAGCTATCTGAGGATTATGGGCAGTATTACGATGCGGCTTCTGGGATTATTCATCAGCTTGAATTGGATGCGGTGGAGGGGTGGCATCTGACGGTGGCGGAACAGGATTTTACCAAAGTTTTTCCTTTCAAACGCCGGAAGATTATCGGTCAACACGGTCAAACGTCTTAA 522 48.85 MAEVHSSNADGIKLFGTMIHLQTRKLKEEPEKGGPVAGGGEGDETEMKRPEKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRAKPPPNCRTLSGELSEDYGQYYDAASGIIHQLELDAVEGWHLTVAEQDFTKVFPFKRRKIIGQHGQTS 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1511220 1511959 + MELO3C000201.2.1 Cme08g00224 334487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00224 173 PANTHER CYCLIC DOF FACTOR 2 7 166 IPR045174 GO:0003700|GO:0006355
Cme08g00224 173 ProSitePatterns Zinc finger Dof-type signature. 56 92 IPR003851 GO:0003677|GO:0006355
Cme08g00224 173 Pfam Dof domain, zinc finger 52 107 IPR003851 GO:0003677|GO:0006355
Cme08g00224 173 ProSiteProfiles Zinc finger Dof-type profile. 54 108 IPR003851 GO:0003677|GO:0006355
Cme08g00224 173 PANTHER DOF ZINC FINGER PROTEIN DOF1.5-LIKE 7 166 - -
Cme08g00224 173 MobiDBLite consensus disorder prediction 24 49 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme08g00224 Cme12g01293 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00224 Cme-Chr8:1511220 Cme12g01987 Cme-Chr12:25615555 3.65E-36 dispersed
Cme12g01293 Cme-Chr12:21014709 Cme08g00224 Cme-Chr8:1511220 3.63E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41737 PF02701 zf-Dof 1.20E-31 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00224 - - csv:101215015 342.428