Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00247 ATGGGCCATGGCCAATCCACATTGCAACAACCACTTTTATTCTCTCAGGATTTGCCTTCATCTTTACTACTACGACTTCACAAAGCTGGACCAGTTGTCGACTGCCCTTCTCTTTCAAAATTGGAATGGCTATGCTTTAGAAGTTTAGAACTGATACAAGCACTTCGTTTAAAGATGGGTTCTGGACGTTGGTTTAAGGCAGTAATTCGCTTAAAAAAAGTGAAAACCAGCAGTTCGAAACAAACTAAGGAGAAATTGGATGATTTGCAAAAAGATTCCCCAAGGTTTAAAAATGATGGTGCTAATGGGAAGAGTAAGTCTTTTGGGATGCCGATTGAAGATGTAGCTGCAGTTCGAATTCAGACAGCATACCGAGCATATCGTGCCAGGAAAAATTTACGTCTCTTGAAAGGGGCCTTCAGACTGCAGAATCTGACTCAAGGTCATTCCGTTAGAAAGCATGCTACATCTACACTAGGTTATCTTCATTCATGGAGCCATATACAGGCTCAAATTAGGGCTCGTCGACTTTGTATGGTGACAGAAGGACGACAGAGACAAAAAAGATTAGAAAATCAACGAAAACTTGAAGCTAAGCTTCATGATATAGAGGTGGAGTGGTGTGGCGGTGCAGACTCCATGGACGGGATTCTTTCAAGGATACATGATAGAGAAGAAGCAGCTGTTAAGCGCGAGCGTGCTTTGGCATATGCATTCTCACATCAGTGGAGAGCAAACTCTAATGAGATGTATGGGTTGGGTAAAGATGAACTTGGTAAAGCCGATTGGGGTTGGAGCTGGAAAGAACGATGGATAGCTGCTCGTCCATGGGAAAGCCGTGTACCATCTCAGTTTGTTAGTCCAAAGAAATCTACAATCAGACAATCAAGCAAAGTCAGTAAGAGAAACTCACCATCCCCTAAAGCACGAGGTCCAGTTAAGCCTCCTTCCCCGAATGGGAAATCATCTGTAAAGGCTCGGAGATTGTCTTATCCAGCAACCGAGAAAACCGAGAAACTGCCTACACAAGAAAAAGGTGTCAAAGAAAGCATTAAAAATGACAAGAATGACAAAGGGAACACCAAGAAAGAAGAAACAACATCCTAA 1107 42.73 MGHGQSTLQQPLLFSQDLPSSLLLRLHKAGPVVDCPSLSKLEWLCFRSLELIQALRLKMGSGRWFKAVIRLKKVKTSSSKQTKEKLDDLQKDSPRFKNDGANGKSKSFGMPIEDVAAVRIQTAYRAYRARKNLRLLKGAFRLQNLTQGHSVRKHATSTLGYLHSWSHIQAQIRARRLCMVTEGRQRQKRLENQRKLEAKLHDIEVEWCGGADSMDGILSRIHDREEAAVKRERALAYAFSHQWRANSNEMYGLGKDELGKADWGWSWKERWIAARPWESRVPSQFVSPKKSTIRQSSKVSKRNSPSPKARGPVKPPSPNGKSSVKARRLSYPATEKTEKLPTQEKGVKESIKNDKNDKGNTKKEETTS 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1613196 1617292 - MELO3C007235.2.1 Cme08g00247 334510

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00247 368 MobiDBLite consensus disorder prediction 284 304 - -
Cme08g00247 368 MobiDBLite consensus disorder prediction 331 368 - -
Cme08g00247 368 PANTHER IQ-DOMAIN 9 59 338 - -
Cme08g00247 368 Gene3D - 113 159 - -
Cme08g00247 368 MobiDBLite consensus disorder prediction 282 368 - -
Cme08g00247 368 ProSiteProfiles IQ motif profile. 113 141 IPR000048 GO:0005515
Cme08g00247 368 PANTHER IQ-DOMAIN 5-RELATED 59 338 - -
Cme08g00247 368 MobiDBLite consensus disorder prediction 80 105 - -
Cme08g00247 368 MobiDBLite consensus disorder prediction 80 99 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00247 - - - csv:101220729 585.489
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01328 Cme-Chr7:18718264 Cme08g00247 Cme-Chr8:1613196 2.01E-68 dispersed
Cme08g00247 Cme-Chr8:1613196 Cme09g00610 Cme-Chr9:6408904 1.48E-34 dispersed
Cme08g00247 Cme-Chr8:1613196 Cme10g00057 Cme-Chr10:431699 1.60E-38 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g183 . . Bda02g00019 . . Bpe01g00879 . . . . . Cma07g00203 . Car07g00168 . . . Bhi03g00330 . . . . . . Cla01g02298 Cam01g2409 Cec04g2056 . Clacu01g2430 Cmu01g2294 Cre04g1962 Cone1ag0191 Cone5ag1677 . . Lsi01g00265 Csa06g03677 . Cme08g00247 . . . . . . . Bma11g01010 . . Cmo07g00202 . . . . Cpe19g01052 . . . . . . . . . . . . . . . . . Chy02g00253 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme09g00610 . 1 470 IQD Protein Family AT3G52290 54.2 1.6e-101 366.7
Cme02g00846 . 1 406 IQD Protein Family AT3G22190 56.7 1.3e-95 347.1
Cme07g00215 . 1 438 IQD Protein Family AT2G26180 60.5 1.0e-116 417.2
Cme08g00247 . 59 332 IQD Protein Family AT2G33990 52.5 3.2e-63 238.8
Cme07g01328 . 40 223 IQD Protein Family AT2G33990 53.5 5.8e-49 191.4
Cme08g00247 . 59 290 IQD Protein Family AT3G15050 50.4 4.8e-56 214.9
Cme07g01328 . 43 216 IQD Protein Family AT3G15050 61.6 1.0e-53 207.2
Cme11g02263 . 1 512 IQD Protein Family AT4G00820 50.4 5.9e-109 391.7
Cme06g00023 . 3 359 IQD Protein Family AT4G00820 52.8 3.1e-81 299.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007113 1 8 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 0 2 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme08g00247 Cme_Chr08 FPKM 9.050129 6.676151 6.928435 7.3865 10.52395 7.020127 10.099958 5.533742 3.830895 5.744291