Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00264 ATGGGTGCTCTCATCGATCTAAATACTACTGAAGAAGATGAATCTCCCTCTCCCGCTGGTTCCTCTGTTTCTTCTTCCTCCGCTTCTGCTTTAACTTCCTCTCCTTCGCCTTCTGTTACTTCCTCAATTTGCTTGGAGTTATGGCATGCTTGTGCTGGCCCTCTCACGTCTTTGCCCAAGAAAGGGAGTTTGGTTGTCTACTTGCCGCAGGGTCACTTCGAACAGATGCAAGAATTTCCGCCTACGCCTTATGATCTCCCTCCTCACATCCTCTGCCGCGTCATTGATGTTCAGCTTCATGCTGAAGCTGGGAGTGACGAGGTTTATGCTCAGGTTTCGTTGTTTCCTGAAAACGAGCAAATGGAGCACAAGATGCAGGAAGAGATGAATAATGACAGCGAGGAGGAGGATGTTGAAGAAGGTGAAAAGGCTACAACACCCCACATGTTCTGTAAGACTCTTACTGCTTCCGACACTAGTACTCATGGAGGCTTCTCTGTCCCTAGACGTGCAGCTGAGGATTGCTTCCCGCCATTGGATTATAATCAACAAAGGCCTTCACAAGAGCTTGTAGCAAAGGATCTCCTTGGGCTAAAATGGAAGTTCAGGCACATATATCGCGGGCAGCCTAGAAGGCATTTGCTGACCACTGGATGGAGTGCTTTTGTGAACAAGAAAAGGCTTGTTTCTGGAGATGCAGTGCTTTTTCTTAGGGGTGATGATGGTGAATTAAGACTGGGGATTCGAAGAGCTGCGCAGCTTAAAAGTGGTTCTGCCTTTTCTAATATTTGCAGTCAGCAGCTCAACTCTAGTAGTATTATGGATGTGGTTAATGCGATATCCTCAAAAAGTTCCTTTAGCGTATGCTACAATCCGAGAGCTGCATCTTCACAGTTTGTCTTGCCTTTTCACAAGTTCTTGAAGAGCATTAACCATTCTTTCTCTGTTGGAATGAGGTTTAGGCTGAGTTTTGAAACCGATGATGGGGCAGATCGAAGACACACTGGACATATAACTGGAGTTGGCGATGTGGATTCTATCAGATGGCCAGGATCAAGGTGGAGGTCCCTTATGGTGAGGTGGGACGATGGCGAAACTAACAGGCATGGAAGGGTTTCCCCTTGGGAGATCGAGCCGTCTGGTTCTGTTTCTTTGTCCAGCAACTTGGTTCCACCTGGTCTGAAAAGAACCAGAATTGGGCTCTCTTCCACAAAACTAGAGTTTCCAGTTCCAAATGGGATTGGAGCATCAGACTTTGGGGAATCTTTAAGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATTTTAGGTTACAGTACTCCCCCTGACGGTGACAATAACAATTGTTGTCCACCTGAAAAGAGGAGATTGATCCCTGGTTTACATGGTTCTGGGATAGCTCTGATGAGAAATGGTTCAAGAAACCCACTTATCAACTCCGAAACTTCCTCCCGGGGTATCGTGTTTGATGAATCCTTCCAATACCATAAGGTCTTGCAAGGTCAAGAAATATTTCCAAGTCCCTATTATGGTAGGGCCGTGGCCACCAATGAAGTTAAGGCAACTGGTGGTTGTGGTCCTGCCAACGGCATTCGATTGCCTAGGACTAAAGATGGATGGCCCATGGCAATGCAGTGTGAAAATTTCCTCACTCGGTCTTCCATTCCTTCTGTACAAGTCTCATCACCATCTTCCGTGTTCATGTTTCAGCAGTCAATGGTTCCTGTTCAAAGCTTTAATTCACATGACCGTGGCAATTTCACAGAACAGAGGATTATGAACAAAAGTACATCCCATCATTCTGGGACAACATTTATGACCGACCATAGCTTGAACACTGAATTCATCCCACAAGGCACGTGTCCCACTTCATTGGGAGAGCAGAATCAGCTCGGCCTATCACATCCTTCAACAACGACAGCATCAGCAGCGTTTACAGTCAGTAAAGATCTGCCTTCAACTTGCAAAGCTGGCTGTAGATTGTTTGGTTTTTCATTGACAGAGGAGAAGAATGTTGGGAATACAGACGACAAAGGTTCTCCAGCTACAGCTCCCATCAATGCAGGAACAACCACTGTTCTTTCCAATATGGGAGTACAATGTTCTTTGAAGTCTCCTCTGATGAACAAGGTGGTTGGAAGCAACTGCACCAAAGTAAGTAACTTATCTGCTCGTGCCGTAGAGGCGATATATTTTGCATAA 2199 45.88 MGALIDLNTTEEDESPSPAGSSVSSSSASALTSSPSPSVTSSICLELWHACAGPLTSLPKKGSLVVYLPQGHFEQMQEFPPTPYDLPPHILCRVIDVQLHAEAGSDEVYAQVSLFPENEQMEHKMQEEMNNDSEEEDVEEGEKATTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYNQQRPSQELVAKDLLGLKWKFRHIYRGQPRRHLLTTGWSAFVNKKRLVSGDAVLFLRGDDGELRLGIRRAAQLKSGSAFSNICSQQLNSSSIMDVVNAISSKSSFSVCYNPRAASSQFVLPFHKFLKSINHSFSVGMRFRLSFETDDGADRRHTGHITGVGDVDSIRWPGSRWRSLMVRWDDGETNRHGRVSPWEIEPSGSVSLSSNLVPPGLKRTRIGLSSTKLEFPVPNGIGASDFGESLRFQKVLQGQEILGYSTPPDGDNNNCCPPEKRRLIPGLHGSGIALMRNGSRNPLINSETSSRGIVFDESFQYHKVLQGQEIFPSPYYGRAVATNEVKATGGCGPANGIRLPRTKDGWPMAMQCENFLTRSSIPSVQVSSPSSVFMFQQSMVPVQSFNSHDRGNFTEQRIMNKSTSHHSGTTFMTDHSLNTEFIPQGTCPTSLGEQNQLGLSHPSTTTASAAFTVSKDLPSTCKAGCRLFGFSLTEEKNVGNTDDKGSPATAPINAGTTTVLSNMGVQCSLKSPLMNKVVGSNCTKVSNLSARAVEAIYFA 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1707190 1712506 + MELO3C007251.2.1 Cme08g00264 334527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00264 732 MobiDBLite consensus disorder prediction 1 35 - -
Cme08g00264 732 PANTHER AUXIN RESPONSE FACTOR 3 34 723 - -
Cme08g00264 732 MobiDBLite consensus disorder prediction 10 35 - -
Cme08g00264 732 Pfam Auxin response factor 277 357 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cme08g00264 732 Gene3D - 148 252 IPR015300 -
Cme08g00264 732 SMART B3_2 150 252 IPR003340 GO:0003677
Cme08g00264 732 Gene3D - 313 387 - -
Cme08g00264 732 Pfam B3 DNA binding domain 150 251 IPR003340 GO:0003677
Cme08g00264 732 Coils Coil 124 144 - -
Cme08g00264 732 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 34 723 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cme08g00264 732 ProSiteProfiles B3 DNA-binding domain profile. 150 252 IPR003340 GO:0003677
Cme08g00264 732 SUPERFAMILY DNA-binding pseudobarrel domain 146 259 IPR015300 -
Cme08g00264 732 CDD B3_DNA 148 250 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00264 Cme-Chr8:1707190 Cme11g01785 Cme-Chr11:26016763 2.45E-147 dispersed
Cme08g00264 Cme-Chr8:1707190 Cme08g00111 Cme-Chr8:821892 1.08E-109 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41742 PF02362 B3 1.60E-21 CL0405 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00264 K14486 - csv:101220018 1325.46