Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00270 ATGCCTTTCTGTTCCTTCCTTTTCCTCCTCTGTTTTCCTCTGTTTTCCTTCGCCCTCAATCAAGAGGGTCATATTCTTCAGGCCTTTAAGCGCTCTATAGAGGATCGTAATCATGTCTTCACTTCCTGGAATGCAACTGACCCTGATCCCTGTTCATGGAATGGTGTCACATGTGATGATCGTCGTCAAGTCATTTCCCTCGAGCTCATCAGCTCTGCTATTTCTTCTACTTTCCCTCTTCAACTCTGTAAGCTTCCACATCTTCTTTACCTCTCTCTTTACAATAATACCTTCCATTCCATTCTTCCTCCTGCCATTTCCAACTGTAGTACTCTTGAGTTTCTTGACCTTGGCCAAAATCTCCTCACCGGTCCTATCCCTCCCTCAATTGCTGATTTGCGTAATCTTCGTTACTTGGATTTGTCCGGCAACAATTTCTCCGGCCGAATACCTGCCACTTTCGGTCGGTTTCAGCAACTAGAGGCGTTTTCGCTTATTTCGAATCTTGTGGGTGGTACCATTCCTCCGTTTCTTGGGAACATTACTTCTCTTAGGATGATGAATTTGTCTTACAACTCGTTTGACCCTGGGAGAATCCCACCGGAGTTGGGTAATCTGGTGAATCTTGAGGTTCTTTGGTTGACGGGTTGTAAATTACGAGGGGAAATTCCCGACACGTTTAGCGGGCTCAAGAACCTCGTTCTTCTGGATTTGAGCAGTAACAATCTTACTGGGGCGTTCCCGATAGCGCTAACGGAGTTAACCCATGTGACCCAGATTGAGTTGTTTGGCAATTCTTTGTCCGGCGCGTTACCAGATACGTTTTCGAAACTCCAGGCGTTGCGTATGTTCGACGTCTCAATGAATAATTTTTCCGGGCCAATTCCAAGTAGCTTGTTTGAGTTGCCGCTTGAAAGTCTTAATGTGTTTAAGAATAATTTCGAGGGTAGCTTGCCGGAAAGCATGGCGAAGTCGAGGTCCTTGATAGAGATGAAGCTATTTGCGAACAAATTCACGGGGTCTTTACCAGCGGATTTGGGAAAATATTCGGCTCTGGAATCGTTGGACATTTCGGACAACTTCTTTTCCGGCAGTATTCCCGAGGGCTTGTGCCAAAAGGGAGCGTTGACGGAGATAATGGTGATCAACAACCGATTTTCCGGCGAACTCCCATCAAGTCTCGGCAATTGCCACAGTCTGACCAGGATCCGATTAGGGAACAACAATTTTACTGGTCCTGTACCAGAAAACATATGGGGACTTCCAGATGTTTCTCTTCTCGAACTTGCAAACAACACCTTCTCGGGCACAATCTCAAAGAAAATAGGCAATTCCAAGATGTTGAGTATGATTCTTATTTCTAATAACAATTTCTCAGGAACAATTCCAAAGGAGATTGGTTCTTTGAAGAATCTGGTCGAGTTTTCTGCTGATCATAACAAATTCATCGGAAATATCCCTAACAGCATTATGAAATTGGATCGGCTAGCTAAGTTAGATCTTCAAAACAACAAGCTTTCCGGGTTGCTCGACCACAGGCTTGATGCCTGGAGGAGGTTGAGTGAACTCAATTTGGCCAATAATAACTTCTCTGGGAAAATTCCCCCGGAAATTGCTTTCTTGCCAGTGCTTAATTACCTTGATCTTTCAGGCAATCAGTTTTCTGGAGAAATCCCACATGGCTTACAGAATTTGAACCTCAATGTTCTAAATTTATCATACAACCACTTAACTGGAATACTTCCTTCCTATTTTGAGAGAACAATGTACAAAAATAGCTTTCTGGGTAATCCTGGATTGTGTAAGGGGGAAAATGATGCGTGTGATCAAATTCATTCTTCAAGAAGTGGAGGAAGAGGTAGAGGAAAAGAAGAATGCGATGAGGAAGGAGGTTGCGTTTGGCTACAGCGATCTATCTTTGTATTTGTAGGTGTGACTCTCTTTGTGGGAGCGATTTTATTCCATGTCAAGTACAAGACAAGAAGTCTCGACATCAAATCAAAGTGGACAATGACATCGTTCCAAAAGCTTTCTTTTGACTATGACGACTTTGTGGGTTCCCTGGATGAAGACAATGTGATAGGCAGTGGAGGCTCTGGCTTAGTTTACAAGATCGTTCTCTCCAATGGCGAAACCATTGCGGTTAAAAAACTTTGGTCTGAGTTGCCTGACGATCGCAACAGCACTGATCTCGAGAATAATTGGAGTGAAGTTAATGTTTTTGATGCAGAAATAATGACTTTGGGTGAAATCAGGCATAAAAACATAGTGAAACTTTTGTGTTGTTGTACTAATGGAGAATGCAAGCTTTTGGTCTATGAATACATGCCTAATGGGAGCTTAGGTGATATGCTTCATGGCAGTAAACGTGAGTTATTGGATTGGCAAACAAGATACAAGATAGCCTTGGATGCTGCTGAGGGGCTTTCTTATCTTCATCATGATTGTGTTCCTCCAATTGTACACAGAGATGTCAAGTCCAATAACATCTTGTTGGATGCCGAATTTGGAGCAAAGATAGCAGATTTCGGAATAGCTGTGACCGTCGATATATCTAAGGATAAATCCACGTCAGTGATTGTTGGTTCTTGTGGTTATATTGCCCCAGAGTATGCTTATACATTGAATGTAAACGAAAAGAGCGACATCTTTAGCTACGGGATGGTAATCCTTGAATTGATAACAGGGAGGCGGCCAACTGAGCTCGAATGCGAAGAAAACAACTTGGTCAAATGGGTATCCACCAATTTAGAAGGGGAAGGCCTCAACCATATTTTAGACCCCAAATTGGATTCCTCACACCGGGAGGAAATGTTGAAGGTCCTCAAAATTGGCCTCCTATGCACCGACCCTCTACCTATCAACCGCCCACCCATGAGACGAGTGGTTACAATGTTGTTAGAAGTTCGTATGGATTGCAATTCGATTATTGCAAGAAGAAAAGGAAGAATGACTCCATATGATTTCGAGGACAGTGAAAATGTGGTATAG 2991 43.1 MPFCSFLFLLCFPLFSFALNQEGHILQAFKRSIEDRNHVFTSWNATDPDPCSWNGVTCDDRRQVISLELISSAISSTFPLQLCKLPHLLYLSLYNNTFHSILPPAISNCSTLEFLDLGQNLLTGPIPPSIADLRNLRYLDLSGNNFSGRIPATFGRFQQLEAFSLISNLVGGTIPPFLGNITSLRMMNLSYNSFDPGRIPPELGNLVNLEVLWLTGCKLRGEIPDTFSGLKNLVLLDLSSNNLTGAFPIALTELTHVTQIELFGNSLSGALPDTFSKLQALRMFDVSMNNFSGPIPSSLFELPLESLNVFKNNFEGSLPESMAKSRSLIEMKLFANKFTGSLPADLGKYSALESLDISDNFFSGSIPEGLCQKGALTEIMVINNRFSGELPSSLGNCHSLTRIRLGNNNFTGPVPENIWGLPDVSLLELANNTFSGTISKKIGNSKMLSMILISNNNFSGTIPKEIGSLKNLVEFSADHNKFIGNIPNSIMKLDRLAKLDLQNNKLSGLLDHRLDAWRRLSELNLANNNFSGKIPPEIAFLPVLNYLDLSGNQFSGEIPHGLQNLNLNVLNLSYNHLTGILPSYFERTMYKNSFLGNPGLCKGENDACDQIHSSRSGGRGRGKEECDEEGGCVWLQRSIFVFVGVTLFVGAILFHVKYKTRSLDIKSKWTMTSFQKLSFDYDDFVGSLDEDNVIGSGGSGLVYKIVLSNGETIAVKKLWSELPDDRNSTDLENNWSEVNVFDAEIMTLGEIRHKNIVKLLCCCTNGECKLLVYEYMPNGSLGDMLHGSKRELLDWQTRYKIALDAAEGLSYLHHDCVPPIVHRDVKSNNILLDAEFGAKIADFGIAVTVDISKDKSTSVIVGSCGYIAPEYAYTLNVNEKSDIFSYGMVILELITGRRPTELECEENNLVKWVSTNLEGEGLNHILDPKLDSSHREEMLKVLKIGLLCTDPLPINRPPMRRVVTMLLEVRMDCNSIIARRKGRMTPYDFEDSENVV 996
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1743543 1747357 - MELO3C007257.2.1 Cme08g00270 334533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00270 996 SMART LRR_typ_2 278 302 IPR003591 -
Cme08g00270 996 SMART LRR_typ_2 566 587 IPR003591 -
Cme08g00270 996 SMART LRR_typ_2 541 564 IPR003591 -
Cme08g00270 996 SMART LRR_typ_2 206 229 IPR003591 -
Cme08g00270 996 SMART LRR_typ_2 230 253 IPR003591 -
Cme08g00270 996 SMART LRR_typ_2 254 277 IPR003591 -
Cme08g00270 996 SMART LRR_typ_2 133 156 IPR003591 -
Cme08g00270 996 SMART LRR_typ_2 85 109 IPR003591 -
Cme08g00270 996 SMART LRR_typ_2 493 516 IPR003591 -
Cme08g00270 996 Pfam Leucine rich repeat 86 146 IPR001611 GO:0005515
Cme08g00270 996 Pfam Leucine rich repeat 208 267 IPR001611 GO:0005515
Cme08g00270 996 Pfam Leucine rich repeat 495 554 IPR001611 GO:0005515
Cme08g00270 996 ProSiteProfiles Leucine-rich repeat profile. 566 587 IPR001611 GO:0005515
Cme08g00270 996 ProSitePatterns Serine/Threonine protein kinases active-site signature. 820 832 IPR008271 GO:0004672|GO:0006468
Cme08g00270 996 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 7 978 - -
Cme08g00270 996 Pfam Leucine rich repeat N-terminal domain 20 59 IPR013210 -
Cme08g00270 996 ProSiteProfiles Protein kinase domain profile. 688 971 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g00270 996 SMART serkin_6 688 984 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g00270 996 SUPERFAMILY L domain-like 48 267 - -
Cme08g00270 996 SUPERFAMILY Protein kinase-like (PK-like) 677 967 IPR011009 -
Cme08g00270 996 SUPERFAMILY RNI-like 199 575 - -
Cme08g00270 996 Gene3D Ribonuclease Inhibitor 19 303 IPR032675 -
Cme08g00270 996 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 7 978 - -
Cme08g00270 996 Pfam Leucine Rich Repeat 566 586 IPR001611 GO:0005515
Cme08g00270 996 Pfam Protein kinase domain 690 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g00270 996 Gene3D Ribonuclease Inhibitor 304 616 IPR032675 -
Cme08g00270 996 Gene3D Transferase(Phosphotransferase) domain 1 776 984 - -
Cme08g00270 996 ProSitePatterns Protein kinases ATP-binding region signature. 694 717 IPR017441 GO:0005524
Cme08g00270 996 Gene3D Phosphorylase Kinase; domain 1 668 775 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00482 Cme-Chr1:3476964 Cme08g00270 Cme-Chr8:1743543 0 dispersed
Cme06g01720 Cme-Chr6:19446849 Cme08g00270 Cme-Chr8:1743543 0 dispersed
Cme08g00270 Cme-Chr8:1743543 Cme07g01827 Cme-Chr7:23749651 0 dispersed
Cme08g00159 Cme-Chr8:1123209 Cme08g00270 Cme-Chr8:1743543 1.78E-11 transposed
Cme12g01317 Cme-Chr12:21222820 Cme08g00270 Cme-Chr8:1743543 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65050 PF00069 Pkinase 1.80E-41 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00270 - - csv:101223091 1758.42