Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00291 ATGGATGACCACCACAACCCCAACCCCAACCACCACCACCACCACCACGAACTCCCTCCACTCCCCACCGCCGCCGTCACCACCCCCACCATTCTCCACTCTCCTCCACAAAATTCATGTTATCTCCCACCTATTCTCTCCCAGACTTGCTTGGGGTCCTTTTCCTCCTCAGCCCCACAATCATTTTTTTCTTCACATGAACCACAACTACTCACTCCCGGCCATTTTCCTCATTCTCCCACCTTCCTTAGCTATGGGTTCGATGACCCAAACATTCATTCTGTTTTTCCTAAAGATGATGGAAAAAAGGCTTTGGATGCCTGGAGTACTAAAGTGGCTCGAACTAATAGAAGACTTGCTCGTCAAAGAACCATTACTTCTTCTTTCACTACTCGTACCTCTTCTTCTTCTTCTTGTGGTTATAATGATGATTATTCCAAGGGTTTAACTGTAACCCATTTCCCTAATACTGATTCTTCACATAATAATCGCAATCTTTTCACCTTTTGTACTCCTGACAATAAGATTTTGAGAATGCTACTGAAGAAGGAGCTGAAGAACAGTGATGTTGGATCTTTGGGCAGGATTGTCCTCCCCAAGAGAGAGGCAGAAGAGAACCTTCCATTTCTCACTGATAAAGAAGGTCTCCAAATTGTGGTGAGAGATGTGAACTCAAACAGAAGATGGACAATGAAATACAAGTACTGGGCAAACAACAGAAGTAGAATGTATGTTCTGGAGAACACAGGGGATTTTGTTAGACAAAATGGTCTTTTGATGGGAGACTCAATGACCCTATACGAGGATGACTGCAAGAACCTC 822 44.16 MDDHHNPNPNHHHHHHELPPLPTAAVTTPTILHSPPQNSCYLPPILSQTCLGSFSSSAPQSFFSSHEPQLLTPGHFPHSPTFLSYGFDDPNIHSVFPKDDGKKALDAWSTKVARTNRRLARQRTITSSFTTRTSSSSSCGYNDDYSKGLTVTHFPNTDSSHNNRNLFTFCTPDNKILRMLLKKELKNSDVGSLGRIVLPKREAEENLPFLTDKEGLQIVVRDVNSNRRWTMKYKYWANNRSRMYVLENTGDFVRQNGLLMGDSMTLYEDDCKNL 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1867762 1869586 + MELO3C032905.2.1 Cme08g00291 334554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00291 274 Gene3D - 170 274 IPR015300 -
Cme08g00291 274 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR LEC2 ISOFORM X1 65 274 - -
Cme08g00291 274 MobiDBLite consensus disorder prediction 1 19 - -
Cme08g00291 274 ProSiteProfiles B3 DNA-binding domain profile. 181 274 IPR003340 GO:0003677
Cme08g00291 274 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 65 274 IPR044800 GO:0003700
Cme08g00291 274 MobiDBLite consensus disorder prediction 1 30 - -
Cme08g00291 274 SUPERFAMILY DNA-binding pseudobarrel domain 180 272 IPR015300 -
Cme08g00291 274 SMART B3_2 181 274 IPR003340 GO:0003677
Cme08g00291 274 CDD B3_DNA 180 270 IPR003340 GO:0003677
Cme08g00291 274 Pfam B3 DNA binding domain 183 268 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00482 Cme-Chr3:7028836 Cme08g00291 Cme-Chr8:1867762 2.78E-30 dispersed
Cme08g00291 Cme-Chr8:1867762 Cme08g00326 Cme-Chr8:2073996 3.58E-16 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41750 PF02362 B3 2.40E-15 CL0405 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00291 - - csv:105436043 451.055