Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00296 ATGGACGAAGAGGCTAATTCTTGGCTTAGGAGAACGAAGTTTTCTCACACGGTTTATCATCGATGGGACTCATTAAGATTAAACCCAGTTCCGTTCATCGTCGAACCACCTCGCAATTCTGGCTTGAAATCGAGGCCTTCATCAGCTTCATCTGCCCAGAAGCCGAATCCTGATATTTCGAAGATTCAGCGAAGTTTCATATCCAATAAACAGAGGTCTCTGTCTCCTCTCCCTGAGAGCAACCTCTCTGAAGTTTTCAAGGAAGCAAAATCCGAGAGTAAGAGATTCTCAACTCCAACTCCTCGACTTAGAGGACGAACTAAGGAATTCAAGAACAAGCTATTCAATAAGGACCCTCAAGATTCAAAATCAGCCAATTCCAAGCCATCGTTGAATACCAGTCCCTTGAAGCAACTATCTTCAGGGAAAGGGGGTGATAAGTCAAAGTTGAAGGACTCTTCCTGGACTAAATATTTCGATTCTGGAAAAGTCACCGCGGTTGAATCAGCGGATGACTGGACTGTTGATCTCTCCAAGTTGTTTGTTGGATTAAGGTTTGCTCATGGAGCTCATAGTCGACTTTATCATGGAAAATACAACGACGAACCTGTTGCTGTTAAAATTATTAGAGTGCCTGATGATGACGAAAACGGAACGCTTGCGTCTCGATTGGAGAAGCAATTCACCAGAGAAGTTACCCTTCTATCGCGTCTCCATCATCCAAATGTTATAAAGTTTGTTGCTGCTTGTAGGAACCCACCTGTATACTGTGTCATTACTGAATATTTGTCTCAAGGATCATTAAGGGCATACTTACACAAACTCGAGCACCAATCCCTCCCTTTGCAAAAACTAATTAAATTTGCTTTAGATGTCGCTCGTGGCATGGAATACCTTCACTCACAAGGTGTAATTCATCGGGATCTTAAGCCTGAGAATGTTCTTATTGATGAAGACATGCACTTGAAAATTGCAGATTTTGGTATAGCTTGTCCTGAGGCCTTTTTTGACCCATTAGCTGATGATCCCGGAACCTACCGATGGATGGCACCGGAGATGATCAAACACAAACCTTGTAGTCGAAAGGTCGATGTGTACAGCTTTGGGCTTATGTTGTGGGAAATGGTATCCGGTGCAATTCCATACGAGGATATGACTCCCATTCAAGCAGCCTTTGCTGTTGTGAATAAGAATCTTAGGCCTGTTATCTCAAGTGATTGTCCACTGGCAATGCGAGCTTTAATTGAGCAATGTTGGTCGCTACAACCGGACAAGAGACCCGATTTCTGGCAGATTGTGAAGGTATTAGAGCAATTTGAATCTTCGCTTGCCCGTGATGGGACACTGAATTTATTAGGTAACCCTCTGTCTAGTTTCCATGAGCATAAGAAAGGGCTCCTCCATTGGATTCAAAAGCTTGGCCCCCTACATCCCGAAACTTCACCCTTGCCGGTGCCGAAACCAAAATTCTCATAA 1476 43.63 MDEEANSWLRRTKFSHTVYHRWDSLRLNPVPFIVEPPRNSGLKSRPSSASSAQKPNPDISKIQRSFISNKQRSLSPLPESNLSEVFKEAKSESKRFSTPTPRLRGRTKEFKNKLFNKDPQDSKSANSKPSLNTSPLKQLSSGKGGDKSKLKDSSWTKYFDSGKVTAVESADDWTVDLSKLFVGLRFAHGAHSRLYHGKYNDEPVAVKIIRVPDDDENGTLASRLEKQFTREVTLLSRLHHPNVIKFVAACRNPPVYCVITEYLSQGSLRAYLHKLEHQSLPLQKLIKFALDVARGMEYLHSQGVIHRDLKPENVLIDEDMHLKIADFGIACPEAFFDPLADDPGTYRWMAPEMIKHKPCSRKVDVYSFGLMLWEMVSGAIPYEDMTPIQAAFAVVNKNLRPVISSDCPLAMRALIEQCWSLQPDKRPDFWQIVKVLEQFESSLARDGTLNLLGNPLSSFHEHKKGLLHWIQKLGPLHPETSPLPVPKPKFS 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1888947 1892501 + MELO3C007280.2.1 Cme08g00296 334559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00296 491 Gene3D Phosphorylase Kinase; domain 1 168 264 - -
Cme08g00296 491 SMART serkin_6 180 439 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g00296 491 ProSitePatterns Serine/Threonine protein kinases active-site signature. 304 316 IPR008271 GO:0004672|GO:0006468
Cme08g00296 491 SUPERFAMILY Protein kinase-like (PK-like) 165 436 IPR011009 -
Cme08g00296 491 MobiDBLite consensus disorder prediction 85 118 - -
Cme08g00296 491 Pfam Protein tyrosine and serine/threonine kinase 187 436 IPR001245 GO:0004672|GO:0006468
Cme08g00296 491 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 3 463 - -
Cme08g00296 491 MobiDBLite consensus disorder prediction 37 151 - -
Cme08g00296 491 Gene3D Transferase(Phosphotransferase) domain 1 265 454 - -
Cme08g00296 491 MobiDBLite consensus disorder prediction 119 141 - -
Cme08g00296 491 PANTHER TYROSINE KINASE FAMILY PROTEIN 3 463 - -
Cme08g00296 491 CDD STKc_MAP3K-like 187 436 - -
Cme08g00296 491 MobiDBLite consensus disorder prediction 41 80 - -
Cme08g00296 491 ProSiteProfiles Protein kinase domain profile. 180 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g00296 491 PRINTS Tyrosine kinase catalytic domain signature 260 273 IPR001245 GO:0004672|GO:0006468
Cme08g00296 491 PRINTS Tyrosine kinase catalytic domain signature 298 316 IPR001245 GO:0004672|GO:0006468
Cme08g00296 491 PRINTS Tyrosine kinase catalytic domain signature 344 354 IPR001245 GO:0004672|GO:0006468
Cme08g00296 491 PRINTS Tyrosine kinase catalytic domain signature 363 385 IPR001245 GO:0004672|GO:0006468
Cme08g00296 491 PRINTS Tyrosine kinase catalytic domain signature 407 429 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01218 Cme-Chr1:15398386 Cme08g00296 Cme-Chr8:1888947 1.37E-75 transposed
Cme03g00342 Cme-Chr3:4558702 Cme08g00296 Cme-Chr8:1888947 1.31E-70 transposed
Cme04g02121 Cme-Chr4:28538023 Cme08g00296 Cme-Chr8:1888947 8.11E-41 transposed
Cme05g01215 Cme-Chr5:19656771 Cme08g00296 Cme-Chr8:1888947 8.00E-98 transposed
Cme06g02352 Cme-Chr6:30841256 Cme08g00296 Cme-Chr8:1888947 9.40E-77 transposed
Cme08g00439 Cme-Chr8:2697311 Cme08g00296 Cme-Chr8:1888947 4.71E-114 transposed
Cme11g01424 Cme-Chr11:21102641 Cme08g00296 Cme-Chr8:1888947 1.57E-34 transposed
Cme12g01699 Cme-Chr12:23877706 Cme08g00296 Cme-Chr8:1888947 2.56E-83 transposed
Cme12g01341 Cme-Chr12:21400507 Cme08g00296 Cme-Chr8:1888947 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65051 PF07714 PK_Tyr_Ser-Thr 7.80E-62 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00296 - - csv:101204268 951.429