Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme08g00325 | ATGGGTTGTGCTAATTGGAATTTGTTCATGAAGATCCTAATTGGGCTGCTCTTGGTTTCCATCAACCCTTTTTGCTTTGGAGATACTGACCTTCGCGATGTTGCTGCAATCAATGCATTATTTATTTCTCTTGGGTACCCTCCTTTGCGAGGATGGATTCTTGTGGGAGGTGATCCATGTGGGGAGAAGTGGCAAGGGGTTGAATGTGTATTCTCAAATATAACAGCTTTACAACTAAGTGGATTGAATTTAGGAGGAGAGCTAGGCACTAGCTTGGACCAATTCGAGTCAATAATATCAATGGATCTTAGCAACAATCATATTGGAGGGAATATTCCATCTACACTGCCCCCTACACTGAGAAGTCTTTCTTTATCAGCAAATCAATTCACTGGAAGCATCCCCCCTGCACTGGCCTCGCTAACACAACTAATGGACCTACACTTGCAGAACAATCAACTTTCTGGGATGCTTGACGCTCTACAGGATCTTCCGTTATCAGACTTGAATATAGAGAACAACCTATTTTCTGGACCTATACCTGCAAAGTTGTTGGGCATTCCAAATTTCAGAAAAGATGGGAACCCTTTCAATACTACGATAATTCCGTCTGCACCTGCTTTAGCCCCTTCACCATTTGCTGTTGCGCCAGTTACTGTGGGACCACCAACCAGACAGGCAGGTGCAGGCCAGCCATTGTGGCCAGGAACTCCTGAATCATCAGATGGAGCAAGGAGTTTTTTCTCTGCTAAGCGGATCATTTGGATTGTTATTATTGGCACAGGAATATTAGTAGCATTAGGATTCTGTCTTCTTGTGTCAATATGCTTGAAAAGAAGCAAGCGTCGAGAAGACAACAAGAGTGTTCGTGACAAAGCTGATATGGCTTCTAATTATAAGCCTAAACCCATGAAGCCCTCGGTTGAAGGTGTAGACATGGAGAAAGAGAGTTCGAGCATAAGCATAGACGACTTCCCTCCACCACCTCCTCCCCCTCCTTTTCCACTCCTTTCAACTCAGGAGATTGCAAAACCAATTGTGGCGGCTGAAGTGCCCAGTAAAGTACCTAGAAAACTGAAAACAAGTTCTTTAAAAGTTTTCACAATCGCGTCACTTCAGCAGTATACTAATAGTTTCTCTGAAGATAATCTTCTTGGGAGAGGAATGCTTGGTAGTGTCTATAGTGCTGAACTTCCAAGTGGAAGGCTTCTGGCTGTTAAGAAACTGGATGGATCCTCTTCAACTCATTGGCATGATGATGATTTTCACAACCTTGTGTCTATTATATGTCAAATTCGGCACGATAACATTGTGGAGCTTGTGGGATATTGTGCTGAGCATGGACAGTATCTACTCATTTATGAGTACTGCAAAAATGGCACACTCTATGACGCACTTCATGTCGACAAGGAGATGCATCAAAAGCTTTCATGGAATGTACGTGTGAAGATTGCACTTGGAGCTGCACGTGCCCTCGAGTATCTGCATGAAGCCTGTCAACCGCCTATCATGCACCAAAATTTCAAGTCTGCTAACATTCTCTTGGACAATGAGCTAAAACCACGAGTCTCTGACTCTGGCTTAGCTCGGCTGCTGCCTTCAGCTACTCAGTCATCTGCACGATTCCTCCCAGCTCAGGGTTATAGTGCTCCTGAATTTGAGCTAGGAACTTACACTTACCAAAGTGATCTTTATAGCTTCGGAGTCGTAATGCTAGAGCTTTTGACTGGTCGAAAGTCTTGTGACCGATCACTGCCTCGAGGAGAACAATTTCTTGTTCGATGGGCTGTTTCAAGGCTCCATGATATCGATGCATTATCAAGAATGGTCGATCCATCACTTAATGGCATGTATCCTGTTAAATCGTTATCGCGCTTTGCTGATATTATTTCCTCTTGTATAATGAGAGAGCCCGAATTTCGGCCCCCAATCTCCGAAATTGTACAGGAACTCTTGCAAATGTTGTAG | 1968 | 43.85 | MGCANWNLFMKILIGLLLVSINPFCFGDTDLRDVAAINALFISLGYPPLRGWILVGGDPCGEKWQGVECVFSNITALQLSGLNLGGELGTSLDQFESIISMDLSNNHIGGNIPSTLPPTLRSLSLSANQFTGSIPPALASLTQLMDLHLQNNQLSGMLDALQDLPLSDLNIENNLFSGPIPAKLLGIPNFRKDGNPFNTTIIPSAPALAPSPFAVAPVTVGPPTRQAGAGQPLWPGTPESSDGARSFFSAKRIIWIVIIGTGILVALGFCLLVSICLKRSKRREDNKSVRDKADMASNYKPKPMKPSVEGVDMEKESSSISIDDFPPPPPPPPFPLLSTQEIAKPIVAAEVPSKVPRKLKTSSLKVFTIASLQQYTNSFSEDNLLGRGMLGSVYSAELPSGRLLAVKKLDGSSSTHWHDDDFHNLVSIICQIRHDNIVELVGYCAEHGQYLLIYEYCKNGTLYDALHVDKEMHQKLSWNVRVKIALGAARALEYLHEACQPPIMHQNFKSANILLDNELKPRVSDSGLARLLPSATQSSARFLPAQGYSAPEFELGTYTYQSDLYSFGVVMLELLTGRKSCDRSLPRGEQFLVRWAVSRLHDIDALSRMVDPSLNGMYPVKSLSRFADIISSCIMREPEFRPPISEIVQELLQML | 655 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 2068138 | 2072550 | + | MELO3C007308.2.1 | Cme08g00325 | 334588 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme08g00325 | 655 | SUPERFAMILY | L domain-like | 35 | 190 | - | - | |
Cme08g00325 | 655 | PANTHER | PROTEIN STRUBBELIG-RECEPTOR FAMILY 3-LIKE ISOFORM X1 | 134 | 292 | - | - | |
Cme08g00325 | 655 | PANTHER | LEUCINE RICH REPEAT KINASE 2 | 329 | 655 | - | - | |
Cme08g00325 | 655 | PANTHER | LEUCINE RICH REPEAT KINASE 2 | 134 | 292 | - | - | |
Cme08g00325 | 655 | PANTHER | LEUCINE RICH REPEAT KINASE 2 | 9 | 149 | - | - | |
Cme08g00325 | 655 | SUPERFAMILY | Protein kinase-like (PK-like) | 356 | 651 | IPR011009 | - | |
Cme08g00325 | 655 | PANTHER | PROTEIN STRUBBELIG-RECEPTOR FAMILY 3-LIKE ISOFORM X1 | 329 | 655 | - | - | |
Cme08g00325 | 655 | Pfam | Protein tyrosine and serine/threonine kinase | 383 | 651 | IPR001245 | GO:0004672|GO:0006468 | |
Cme08g00325 | 655 | Gene3D | Transferase(Phosphotransferase) domain 1 | 457 | 655 | - | - | |
Cme08g00325 | 655 | MobiDBLite | consensus disorder prediction | 283 | 298 | - | - | |
Cme08g00325 | 655 | PANTHER | PROTEIN STRUBBELIG-RECEPTOR FAMILY 3-LIKE ISOFORM X1 | 9 | 149 | - | - | |
Cme08g00325 | 655 | MobiDBLite | consensus disorder prediction | 283 | 309 | - | - | |
Cme08g00325 | 655 | Gene3D | Ribonuclease Inhibitor | 44 | 198 | IPR032675 | - | |
Cme08g00325 | 655 | Gene3D | Phosphorylase Kinase; domain 1 | 346 | 456 | - | - | |
Cme08g00325 | 655 | ProSiteProfiles | Protein kinase domain profile. | 379 | 655 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme08g00325 | Cme-Chr8:2068138 | Cme01g02407 | Cme-Chr1:32378686 | 2.52E-69 | dispersed | |
Cme01g02755 | Cme-Chr1:34670615 | Cme08g00325 | Cme-Chr8:2068138 | 3.76E-144 | transposed | |
Cme03g00822 | Cme-Chr3:15445884 | Cme08g00325 | Cme-Chr8:2068138 | 1.22E-136 | transposed | |
Cme04g01519 | Cme-Chr4:21789300 | Cme08g00325 | Cme-Chr8:2068138 | 9.96E-145 | transposed | |
Cme12g00906 | Cme-Chr12:15934595 | Cme08g00325 | Cme-Chr8:2068138 | 2.50E-163 | transposed | |
Cme01g00355 | Cme-Chr1:2619716 | Cme08g00325 | Cme-Chr8:2068138 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65052 | PF07714 | PK_Tyr_Ser-Thr | 3.00E-38 | CL0016 | Cme | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme08g00325 | - | - | cmo:103484543 | 1085.86 |