Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00325 ATGGGTTGTGCTAATTGGAATTTGTTCATGAAGATCCTAATTGGGCTGCTCTTGGTTTCCATCAACCCTTTTTGCTTTGGAGATACTGACCTTCGCGATGTTGCTGCAATCAATGCATTATTTATTTCTCTTGGGTACCCTCCTTTGCGAGGATGGATTCTTGTGGGAGGTGATCCATGTGGGGAGAAGTGGCAAGGGGTTGAATGTGTATTCTCAAATATAACAGCTTTACAACTAAGTGGATTGAATTTAGGAGGAGAGCTAGGCACTAGCTTGGACCAATTCGAGTCAATAATATCAATGGATCTTAGCAACAATCATATTGGAGGGAATATTCCATCTACACTGCCCCCTACACTGAGAAGTCTTTCTTTATCAGCAAATCAATTCACTGGAAGCATCCCCCCTGCACTGGCCTCGCTAACACAACTAATGGACCTACACTTGCAGAACAATCAACTTTCTGGGATGCTTGACGCTCTACAGGATCTTCCGTTATCAGACTTGAATATAGAGAACAACCTATTTTCTGGACCTATACCTGCAAAGTTGTTGGGCATTCCAAATTTCAGAAAAGATGGGAACCCTTTCAATACTACGATAATTCCGTCTGCACCTGCTTTAGCCCCTTCACCATTTGCTGTTGCGCCAGTTACTGTGGGACCACCAACCAGACAGGCAGGTGCAGGCCAGCCATTGTGGCCAGGAACTCCTGAATCATCAGATGGAGCAAGGAGTTTTTTCTCTGCTAAGCGGATCATTTGGATTGTTATTATTGGCACAGGAATATTAGTAGCATTAGGATTCTGTCTTCTTGTGTCAATATGCTTGAAAAGAAGCAAGCGTCGAGAAGACAACAAGAGTGTTCGTGACAAAGCTGATATGGCTTCTAATTATAAGCCTAAACCCATGAAGCCCTCGGTTGAAGGTGTAGACATGGAGAAAGAGAGTTCGAGCATAAGCATAGACGACTTCCCTCCACCACCTCCTCCCCCTCCTTTTCCACTCCTTTCAACTCAGGAGATTGCAAAACCAATTGTGGCGGCTGAAGTGCCCAGTAAAGTACCTAGAAAACTGAAAACAAGTTCTTTAAAAGTTTTCACAATCGCGTCACTTCAGCAGTATACTAATAGTTTCTCTGAAGATAATCTTCTTGGGAGAGGAATGCTTGGTAGTGTCTATAGTGCTGAACTTCCAAGTGGAAGGCTTCTGGCTGTTAAGAAACTGGATGGATCCTCTTCAACTCATTGGCATGATGATGATTTTCACAACCTTGTGTCTATTATATGTCAAATTCGGCACGATAACATTGTGGAGCTTGTGGGATATTGTGCTGAGCATGGACAGTATCTACTCATTTATGAGTACTGCAAAAATGGCACACTCTATGACGCACTTCATGTCGACAAGGAGATGCATCAAAAGCTTTCATGGAATGTACGTGTGAAGATTGCACTTGGAGCTGCACGTGCCCTCGAGTATCTGCATGAAGCCTGTCAACCGCCTATCATGCACCAAAATTTCAAGTCTGCTAACATTCTCTTGGACAATGAGCTAAAACCACGAGTCTCTGACTCTGGCTTAGCTCGGCTGCTGCCTTCAGCTACTCAGTCATCTGCACGATTCCTCCCAGCTCAGGGTTATAGTGCTCCTGAATTTGAGCTAGGAACTTACACTTACCAAAGTGATCTTTATAGCTTCGGAGTCGTAATGCTAGAGCTTTTGACTGGTCGAAAGTCTTGTGACCGATCACTGCCTCGAGGAGAACAATTTCTTGTTCGATGGGCTGTTTCAAGGCTCCATGATATCGATGCATTATCAAGAATGGTCGATCCATCACTTAATGGCATGTATCCTGTTAAATCGTTATCGCGCTTTGCTGATATTATTTCCTCTTGTATAATGAGAGAGCCCGAATTTCGGCCCCCAATCTCCGAAATTGTACAGGAACTCTTGCAAATGTTGTAG 1968 43.85 MGCANWNLFMKILIGLLLVSINPFCFGDTDLRDVAAINALFISLGYPPLRGWILVGGDPCGEKWQGVECVFSNITALQLSGLNLGGELGTSLDQFESIISMDLSNNHIGGNIPSTLPPTLRSLSLSANQFTGSIPPALASLTQLMDLHLQNNQLSGMLDALQDLPLSDLNIENNLFSGPIPAKLLGIPNFRKDGNPFNTTIIPSAPALAPSPFAVAPVTVGPPTRQAGAGQPLWPGTPESSDGARSFFSAKRIIWIVIIGTGILVALGFCLLVSICLKRSKRREDNKSVRDKADMASNYKPKPMKPSVEGVDMEKESSSISIDDFPPPPPPPPFPLLSTQEIAKPIVAAEVPSKVPRKLKTSSLKVFTIASLQQYTNSFSEDNLLGRGMLGSVYSAELPSGRLLAVKKLDGSSSTHWHDDDFHNLVSIICQIRHDNIVELVGYCAEHGQYLLIYEYCKNGTLYDALHVDKEMHQKLSWNVRVKIALGAARALEYLHEACQPPIMHQNFKSANILLDNELKPRVSDSGLARLLPSATQSSARFLPAQGYSAPEFELGTYTYQSDLYSFGVVMLELLTGRKSCDRSLPRGEQFLVRWAVSRLHDIDALSRMVDPSLNGMYPVKSLSRFADIISSCIMREPEFRPPISEIVQELLQML 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2068138 2072550 + MELO3C007308.2.1 Cme08g00325 334588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00325 655 SUPERFAMILY L domain-like 35 190 - -
Cme08g00325 655 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 3-LIKE ISOFORM X1 134 292 - -
Cme08g00325 655 PANTHER LEUCINE RICH REPEAT KINASE 2 329 655 - -
Cme08g00325 655 PANTHER LEUCINE RICH REPEAT KINASE 2 134 292 - -
Cme08g00325 655 PANTHER LEUCINE RICH REPEAT KINASE 2 9 149 - -
Cme08g00325 655 SUPERFAMILY Protein kinase-like (PK-like) 356 651 IPR011009 -
Cme08g00325 655 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 3-LIKE ISOFORM X1 329 655 - -
Cme08g00325 655 Pfam Protein tyrosine and serine/threonine kinase 383 651 IPR001245 GO:0004672|GO:0006468
Cme08g00325 655 Gene3D Transferase(Phosphotransferase) domain 1 457 655 - -
Cme08g00325 655 MobiDBLite consensus disorder prediction 283 298 - -
Cme08g00325 655 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 3-LIKE ISOFORM X1 9 149 - -
Cme08g00325 655 MobiDBLite consensus disorder prediction 283 309 - -
Cme08g00325 655 Gene3D Ribonuclease Inhibitor 44 198 IPR032675 -
Cme08g00325 655 Gene3D Phosphorylase Kinase; domain 1 346 456 - -
Cme08g00325 655 ProSiteProfiles Protein kinase domain profile. 379 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00325 Cme-Chr8:2068138 Cme01g02407 Cme-Chr1:32378686 2.52E-69 dispersed
Cme01g02755 Cme-Chr1:34670615 Cme08g00325 Cme-Chr8:2068138 3.76E-144 transposed
Cme03g00822 Cme-Chr3:15445884 Cme08g00325 Cme-Chr8:2068138 1.22E-136 transposed
Cme04g01519 Cme-Chr4:21789300 Cme08g00325 Cme-Chr8:2068138 9.96E-145 transposed
Cme12g00906 Cme-Chr12:15934595 Cme08g00325 Cme-Chr8:2068138 2.50E-163 transposed
Cme01g00355 Cme-Chr1:2619716 Cme08g00325 Cme-Chr8:2068138 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65052 PF07714 PK_Tyr_Ser-Thr 3.00E-38 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00325 - - cmo:103484543 1085.86