Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00354 ATGGCTAGTAATTGCAGAAAGGTTGTTGGGTTTCTTCAATTCTTTGTTATTTCATTCTTCCTTTGTTCTTCTCCTCTGTTTTGCGATTCAGCAAATTCAATTACAAGGGGTAGAGGTTTAAGAGACGGTAGTAATGAAACCCTCATATCCCCGAACGAGTCCTACGAACTGGGTTTCTTCAGCCCCATAAATTCTTCATTACGATACGTCGGAATATGGTATCACAAGATCGAGGAACAGTCTGTTATTTGGGTTGCGAATAGAGATAGCCCACTTCGTAATAGAGATGGGGTTTTGATAATCGGAGACGACGGGAACTTGGTCGTTCAGGACGGTAACAACTTCTCTGTTTGGACAAGCAATGTCACAGCGAATTCGTTTGAGCCCAGAAACTTAACTCTTCATAACCATGGAAATTTGGTTCTCTCGAGTGGAGACGACTCGTCGAAAGTTCATTGGAGCAGCTTCGAACACCCCACAGATACATTTCTTCCGAACATGGTGGTGAGAGTGAACCCACAAATGGGCGAGAAACGAATGTTTATGTCGTGGAAATCAGAGACTAATCCGGCCGTCGGAAATTACTGTCTGGGTGTGGATCCCCGTGGAGCTGTACAGATCATCGTTTGGAATGGGAATAATCGATGGTGGAGAAGCGGCCACTGGGATAAGCAGATTTTCTCTGGGATTCCAACTATGCGTTCTACGTCGTTGTACGGGTTCAAGATTACCCCTGAAGATGGAAATAACATTAGCGTAACTTTTCAAGCTCTGAATGATTTGGATAAGCTGAAATTTCAAATTCAGTGGGATGGTAAAGAAGCACAGCAACGATTGAATGAAACAACTCGCAAATGGGATACCATTCGTTTACTGCCTTCGAACGATTGCGATTTCTATAATTTTTGTGGGGATTTTGGGATTTGTTCTGAAAAGAGTCGTCCTAAGTGTAGCTGCCCTCAAGGGTTTATACCCCAAAACAAAGAACGATGGGACAGAGGGATTTGGTCAGATGGGTGTCGGAGGAAGACTCCATTGCTTGAGCAGAGAATGAAAAGTAATCCAAATGGAACTATTGAAGATGGTGAGCAAGACGGATTTGTGGATCTACTATTTGTGAAATTGCCCGATTTCATAACTGGAATATTTGTGGTGGAGTCGTGTAGAGATAGTTGTTCCAGCAATTCTTCGTGTGTTGCATATTCGGATGCTCCTGGAATTGGGTGCGCTACTTGGGATGGACCCTTAAAAGATATTCAGAGATTTGAGGGTGCTGGGAATACTTTGCACCTTCGTCTCGCTCATTCTGATTTGACACCTGTAGATAGCGAGGGCAAATTGTCAACTGGCGTGATAGTGGCAATATGTTTTGGAGGAGCAGCTGCCGTGGCCATAATAGCATTGCTGCTATGGAAATTCAGAGGCAAAACGAAAGCTGCTTCTACAAGTGAACCTCAGAACAAAACTGAAGTACCAATGTTTGACCTGAGCAAGAGCAAAGAACTTTCTGCAGAGCTTTCAGGGCCATACGAATTAGGCATAGAAGGTGAACAATTGAGTGGACCAGATTTGCCAATGTTCAATTTCAACTGTATAGCTGCAGCTACCGATAACTTTTCCGAGGAAAACAAGCTTGGCCAAGGAGGCTTCGGCCCTGTATACAAGGGAAAGCTTCCATCTGGACAAGAAATTGCTGTCAAGAGGCTTTCAGTCCGGTCTGGCCAAGGTCTAGAAGAGTTCAAGAATGAGATTATACTAATTGGAAAGTTACAGCACCGAAACCTCGTCAGATTGTTGGGCTACAGCATTCAAGGAGAGGACAAGTTGCTGCTCTATGAATATATGCCAAACAAAAGCTTGGACTGGTTTCTTTTCGATCCAAACAAGCAGGCACTACTAGATTGGAAAAAACGGTTGTCAATCATTGAGGGAATTGCCCGAGGGCTGCTATACCTTCATCGAGACTCGAGACTTCTTATTATTCATAGAGATTTGAAAGCTAGCAATATTTTACTAGATGAAGACATGAATCCAAAGATATCGGACTTTGGTATGGCTAGAATATTTGGTGGAAACCAAAATGAGGCGACCAATACAATTCGAGTTGTTGGCACATATGGTTACATGGCTCCGGAATATGCAATGGAAGGTTTATTTTCGGTGAAATCAGACGTATATAGTTTTGGTGTTTTGCTATTGGAATTAATTTGTGGTCGGAGGAACACTAGCTTTCGCTCCACTGAATACTTAACCTTGATTAGCTATGCTTGGAAACTTTGGAATGAAGGAAGAGCGATTGAACTTCTTGACCCTTCTATTCGCGATTCATCCCCTGAGAATGAAGTATTGAAATGCATACATGTAGCAATGTTATGTGTTCAAGACTCTCCAGCTTATAGACCAACACTGCAGTCATTGGTTCTAATGCTGGAGAGTGAATCTTCTTCTCTGCAACAACCAAGACAACCCACCTATACTTCAACGAGAGCCTCAATTGATACAGATTTGTTTACAGAAGGCCACGACATTGTATCGTCAAATGACGTAACGAAGCAAACAATTGATGAGTTGAGAAATGAAGTGTGTCCAACCCTGTCACTTCAGTCATATCTGCAAGATGATCCATTGGTAACACAACTATTTTATGTTGTTAGGAAAAGCTTCCACAAAATGTAA 2676 42.56 MASNCRKVVGFLQFFVISFFLCSSPLFCDSANSITRGRGLRDGSNETLISPNESYELGFFSPINSSLRYVGIWYHKIEEQSVIWVANRDSPLRNRDGVLIIGDDGNLVVQDGNNFSVWTSNVTANSFEPRNLTLHNHGNLVLSSGDDSSKVHWSSFEHPTDTFLPNMVVRVNPQMGEKRMFMSWKSETNPAVGNYCLGVDPRGAVQIIVWNGNNRWWRSGHWDKQIFSGIPTMRSTSLYGFKITPEDGNNISVTFQALNDLDKLKFQIQWDGKEAQQRLNETTRKWDTIRLLPSNDCDFYNFCGDFGICSEKSRPKCSCPQGFIPQNKERWDRGIWSDGCRRKTPLLEQRMKSNPNGTIEDGEQDGFVDLLFVKLPDFITGIFVVESCRDSCSSNSSCVAYSDAPGIGCATWDGPLKDIQRFEGAGNTLHLRLAHSDLTPVDSEGKLSTGVIVAICFGGAAAVAIIALLLWKFRGKTKAASTSEPQNKTEVPMFDLSKSKELSAELSGPYELGIEGEQLSGPDLPMFNFNCIAAATDNFSEENKLGQGGFGPVYKGKLPSGQEIAVKRLSVRSGQGLEEFKNEIILIGKLQHRNLVRLLGYSIQGEDKLLLYEYMPNKSLDWFLFDPNKQALLDWKKRLSIIEGIARGLLYLHRDSRLLIIHRDLKASNILLDEDMNPKISDFGMARIFGGNQNEATNTIRVVGTYGYMAPEYAMEGLFSVKSDVYSFGVLLLELICGRRNTSFRSTEYLTLISYAWKLWNEGRAIELLDPSIRDSSPENEVLKCIHVAMLCVQDSPAYRPTLQSLVLMLESESSSLQQPRQPTYTSTRASIDTDLFTEGHDIVSSNDVTKQTIDELRNEVCPTLSLQSYLQDDPLVTQLFYVVRKSFHKM 891
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2239423 2243576 + MELO3C007338.2.1 Cme08g00354 334617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00354 891 Gene3D Transferase(Phosphotransferase) domain 1 615 834 - -
Cme08g00354 891 SMART blect_4 39 159 IPR001480 -
Cme08g00354 891 CDD STKc_IRAK 545 811 - -
Cme08g00354 891 SUPERFAMILY alpha-D-mannose-specific plant lectins 82 190 IPR036426 -
Cme08g00354 891 Pfam Protein tyrosine and serine/threonine kinase 542 808 IPR001245 GO:0004672|GO:0006468
Cme08g00354 891 ProSitePatterns Serine/Threonine protein kinases active-site signature. 660 672 IPR008271 GO:0004672|GO:0006468
Cme08g00354 891 Pfam S-locus glycoprotein domain 217 326 IPR000858 GO:0048544
Cme08g00354 891 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 12 853 - -
Cme08g00354 891 SUPERFAMILY Protein kinase-like (PK-like) 524 833 IPR011009 -
Cme08g00354 891 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 12 853 - -
Cme08g00354 891 Pfam D-mannose binding lectin 82 185 IPR001480 -
Cme08g00354 891 Gene3D - 28 156 IPR036426 -
Cme08g00354 891 ProSiteProfiles EGF-like domain profile. 293 329 IPR000742 -
Cme08g00354 891 ProSiteProfiles Protein kinase domain profile. 539 825 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g00354 891 ProSiteProfiles Bulb-type lectin domain profile. 33 155 IPR001480 -
Cme08g00354 891 CDD PAN_AP_plant 360 434 - -
Cme08g00354 891 PIRSF SRK 4 858 IPR024171 GO:0004674
Cme08g00354 891 Gene3D Phosphorylase Kinase; domain 1 514 614 - -
Cme08g00354 891 CDD B_lectin 43 159 IPR001480 -
Cme08g00354 891 SMART serkin_6 539 810 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g00354 891 Pfam PAN-like domain 363 418 IPR003609 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme08g00354 Cme12g01450 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00354 Cme-Chr8:2239423 Cme12g01412 Cme-Chr12:21968776 0 dispersed
Cme01g00378 Cme-Chr1:2753155 Cme08g00354 Cme-Chr8:2239423 1.46E-147 wgd
Cme12g01409 Cme-Chr12:21947518 Cme08g00354 Cme-Chr8:2239423 7.66E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65053 PF07714 PK_Tyr_Ser-Thr 3.10E-46 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00354 - - csv:101207147 1595.87