Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme08g00355 | ATGGCGGCTCCATACCCTGATGATTTCAAGTGCCCTATTTCTCTGGAGATAATGTCGGACCCTGTAATACTTTCCTCCGGCCACACCTTTGATCGTTCCTCAATCCAACGCTGGCTCGACGCCGGTCACCGGACTTGCCCTATCACCCAATTGCCCCTTCCTCAGAACCCTTCTCTAATACCTAACCATGCCCTTCGAAGCTTAATTTCAAATTTCAACCCTGTTTCCCTTTCCAAGCCATTTCTCCCTCATCCGCCGCCTCAAACCCTAATCTCGATTCTCATCTCTCCTTCTTCCTCCCTTGATTCCAAGCTCGATTGCCTCAATCAACTCGCCAGGGTTTCAAAGCGCGATTCCGCTGTGCGTCGAAGATTGACCGAGTCCGGTGCCGTTTCGGCCGTTCTTAAATGCGTTGGTTCTGACGATCCCAGTCTCCAAGAGAAAGCTCTCTCCCTCTTGCTTAATCTTAGTTTGGACGATGATAACAAAGTGGGTTTGGTTGCAGAAGGGGCTATTGGTCTCATCGTCGCTGCTCTTCAAGCTAGGTCCGCCGATTGCAGAGCCGTAGCGGCCACGATGCTGACGAGCTTAGCGGTTGTGGAGGTAAACAAAGCTACAATTGGGGCATATCCCTATGCAGTTCGTTCTCTGGTTTATCTCTTACGAAACGGCAACAACAGAGAGCAGAAAGAAGCTGCAACTGCGCTTTACGCCATTTGTTCATTCCCTGGGAACCGTTTGCGGGTTGTGGAATGTGGGGCTGTTCCCATTTTGCTTAAAATCGCAAATTCTGGGTTGGATAGAGCAGTGGAGGTTCTGGGAGTTTTGGCTAAGTGCAAGGAAGGTCGAGAAGAGATGCAATGGTTCAAGGGATGTGTGGAGATTTTGAGTCGTGTTTTGAGAAATGGATCACCAAGAGGAGTTCAATATGCTCTTCTAACACTGACTTCCCTTTGCTGCCATTGCGAGCGGCTCTGCGCGGAGGCAAGAAGAGAAGGCGTTTTGGGAATCTGTATGACATTGATTGATGATGATAGTGAAAAGATCAGAGCAAATGCTGCAAATTTGATTCATATACTGAAAGGAAACACCCCATGA | 1098 | 48.82 | MAAPYPDDFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITQLPLPQNPSLIPNHALRSLISNFNPVSLSKPFLPHPPPQTLISILISPSSSLDSKLDCLNQLARVSKRDSAVRRRLTESGAVSAVLKCVGSDDPSLQEKALSLLLNLSLDDDNKVGLVAEGAIGLIVAALQARSADCRAVAATMLTSLAVVEVNKATIGAYPYAVRSLVYLLRNGNNREQKEAATALYAICSFPGNRLRVVECGAVPILLKIANSGLDRAVEVLGVLAKCKEGREEMQWFKGCVEILSRVLRNGSPRGVQYALLTLTSLCCHCERLCAEARREGVLGICMTLIDDDSEKIRANAANLIHILKGNTP | 365 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 2245658 | 2247196 | + | MELO3C007339.2.1 | Cme08g00355 | 334618 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme08g00355 | 365 | SUPERFAMILY | RING/U-box | 3 | 72 | - | - | |
Cme08g00355 | 365 | PANTHER | U-BOX DOMAIN-CONTAINING PROTEIN 8 | 1 | 361 | - | - | |
Cme08g00355 | 365 | SMART | arm_5 | 118 | 158 | IPR000225 | GO:0005515 | |
Cme08g00355 | 365 | SMART | arm_5 | 159 | 199 | IPR000225 | GO:0005515 | |
Cme08g00355 | 365 | SMART | arm_5 | 279 | 320 | IPR000225 | GO:0005515 | |
Cme08g00355 | 365 | SMART | arm_5 | 242 | 278 | IPR000225 | GO:0005515 | |
Cme08g00355 | 365 | SMART | arm_5 | 200 | 241 | IPR000225 | GO:0005515 | |
Cme08g00355 | 365 | SMART | arm_5 | 322 | 362 | IPR000225 | GO:0005515 | |
Cme08g00355 | 365 | SMART | Ubox_2 | 8 | 72 | IPR003613 | GO:0004842|GO:0016567 | |
Cme08g00355 | 365 | Pfam | U-box domain | 6 | 72 | IPR003613 | GO:0004842|GO:0016567 | |
Cme08g00355 | 365 | PANTHER | U BOX DOMAIN-CONTAINING | 1 | 361 | - | - | |
Cme08g00355 | 365 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 5 | 76 | IPR013083 | - | |
Cme08g00355 | 365 | ProSiteProfiles | U-box domain profile. | 4 | 79 | IPR003613 | GO:0004842|GO:0016567 | |
Cme08g00355 | 365 | Gene3D | - | 209 | 364 | IPR011989 | - | |
Cme08g00355 | 365 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 129 | 171 | IPR000225 | GO:0005515 | |
Cme08g00355 | 365 | SUPERFAMILY | ARM repeat | 88 | 360 | IPR016024 | - | |
Cme08g00355 | 365 | Gene3D | - | 87 | 208 | IPR011989 | - | |
Cme08g00355 | 365 | CDD | RING-Ubox_PUB | 9 | 50 | IPR045210 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme08g00355 | Cme-Chr8:2245658 | Cme12g00199 | Cme-Chr12:2053105 | 1.45E-62 | dispersed | |
Cme08g00355 | Cme-Chr8:2245658 | Cme11g01284 | Cme-Chr11:19590109 | 2.07E-59 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme08g00355 | - | - | csv:101213883 | 664.84 |