Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00355 ATGGCGGCTCCATACCCTGATGATTTCAAGTGCCCTATTTCTCTGGAGATAATGTCGGACCCTGTAATACTTTCCTCCGGCCACACCTTTGATCGTTCCTCAATCCAACGCTGGCTCGACGCCGGTCACCGGACTTGCCCTATCACCCAATTGCCCCTTCCTCAGAACCCTTCTCTAATACCTAACCATGCCCTTCGAAGCTTAATTTCAAATTTCAACCCTGTTTCCCTTTCCAAGCCATTTCTCCCTCATCCGCCGCCTCAAACCCTAATCTCGATTCTCATCTCTCCTTCTTCCTCCCTTGATTCCAAGCTCGATTGCCTCAATCAACTCGCCAGGGTTTCAAAGCGCGATTCCGCTGTGCGTCGAAGATTGACCGAGTCCGGTGCCGTTTCGGCCGTTCTTAAATGCGTTGGTTCTGACGATCCCAGTCTCCAAGAGAAAGCTCTCTCCCTCTTGCTTAATCTTAGTTTGGACGATGATAACAAAGTGGGTTTGGTTGCAGAAGGGGCTATTGGTCTCATCGTCGCTGCTCTTCAAGCTAGGTCCGCCGATTGCAGAGCCGTAGCGGCCACGATGCTGACGAGCTTAGCGGTTGTGGAGGTAAACAAAGCTACAATTGGGGCATATCCCTATGCAGTTCGTTCTCTGGTTTATCTCTTACGAAACGGCAACAACAGAGAGCAGAAAGAAGCTGCAACTGCGCTTTACGCCATTTGTTCATTCCCTGGGAACCGTTTGCGGGTTGTGGAATGTGGGGCTGTTCCCATTTTGCTTAAAATCGCAAATTCTGGGTTGGATAGAGCAGTGGAGGTTCTGGGAGTTTTGGCTAAGTGCAAGGAAGGTCGAGAAGAGATGCAATGGTTCAAGGGATGTGTGGAGATTTTGAGTCGTGTTTTGAGAAATGGATCACCAAGAGGAGTTCAATATGCTCTTCTAACACTGACTTCCCTTTGCTGCCATTGCGAGCGGCTCTGCGCGGAGGCAAGAAGAGAAGGCGTTTTGGGAATCTGTATGACATTGATTGATGATGATAGTGAAAAGATCAGAGCAAATGCTGCAAATTTGATTCATATACTGAAAGGAAACACCCCATGA 1098 48.82 MAAPYPDDFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITQLPLPQNPSLIPNHALRSLISNFNPVSLSKPFLPHPPPQTLISILISPSSSLDSKLDCLNQLARVSKRDSAVRRRLTESGAVSAVLKCVGSDDPSLQEKALSLLLNLSLDDDNKVGLVAEGAIGLIVAALQARSADCRAVAATMLTSLAVVEVNKATIGAYPYAVRSLVYLLRNGNNREQKEAATALYAICSFPGNRLRVVECGAVPILLKIANSGLDRAVEVLGVLAKCKEGREEMQWFKGCVEILSRVLRNGSPRGVQYALLTLTSLCCHCERLCAEARREGVLGICMTLIDDDSEKIRANAANLIHILKGNTP 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2245658 2247196 + MELO3C007339.2.1 Cme08g00355 334618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00355 365 SUPERFAMILY RING/U-box 3 72 - -
Cme08g00355 365 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 8 1 361 - -
Cme08g00355 365 SMART arm_5 118 158 IPR000225 GO:0005515
Cme08g00355 365 SMART arm_5 159 199 IPR000225 GO:0005515
Cme08g00355 365 SMART arm_5 279 320 IPR000225 GO:0005515
Cme08g00355 365 SMART arm_5 242 278 IPR000225 GO:0005515
Cme08g00355 365 SMART arm_5 200 241 IPR000225 GO:0005515
Cme08g00355 365 SMART arm_5 322 362 IPR000225 GO:0005515
Cme08g00355 365 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
Cme08g00355 365 Pfam U-box domain 6 72 IPR003613 GO:0004842|GO:0016567
Cme08g00355 365 PANTHER U BOX DOMAIN-CONTAINING 1 361 - -
Cme08g00355 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 76 IPR013083 -
Cme08g00355 365 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
Cme08g00355 365 Gene3D - 209 364 IPR011989 -
Cme08g00355 365 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 129 171 IPR000225 GO:0005515
Cme08g00355 365 SUPERFAMILY ARM repeat 88 360 IPR016024 -
Cme08g00355 365 Gene3D - 87 208 IPR011989 -
Cme08g00355 365 CDD RING-Ubox_PUB 9 50 IPR045210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00355 Cme-Chr8:2245658 Cme12g00199 Cme-Chr12:2053105 1.45E-62 dispersed
Cme08g00355 Cme-Chr8:2245658 Cme11g01284 Cme-Chr11:19590109 2.07E-59 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00355 - - csv:101213883 664.84