Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00373 ATGGGAAGCTTGTGTTGTGAAACGCCCTTCTTCCTCGTCTCCTTCATTCTCCTCCTCGTCCTCCAACACTCAATGTTTCCCACAACTAATTCTCAGCCAGACTTTATATACAGCAGCTGTTCAAACAATGCCATCTACACCAACAACAGCCCTTTCAAGAAAAATCTCCACAACGTACTTTTCTCCATCTCTTCCCAAACCACCCTACTTGATTACGGTCGTTTCTACAACGCCACTTCTGGCGAAGATCCCGATCGAGCCACCGCTCTCGCTCTTTGCCGTGGAGGCGTTCCATTAGAGCAATGTAGAAGCTGTGTTTATAACTCCACGCTGAGGATTACTAAAGATTGTCCAAAGCAGAGAGAAGCAGAGGGATGGTACTCGGATTGTCAAATTCGTTACTCAAACAACTCTATTTATGGTGTCTTAGTCAGAAATATCAAGTACGTGGTGTGGAACAGGCGAACAGCAGTAAACCCAGATGGGTTCAATAAGGTGCTGCGCAGTTTGTTGGATGAGCTGGGGAGGGAGGCTGCGTCGGGGAGCTCTGTTCAGAAGTCAGCTTGGGGAGATAAGAAGGTTCCAAGTTCAAGCGTGGATATCATATATGGATTGGTTGATTGTCTTCCTGATTTGTCTTACTTGGATTGTTTGGACTGCCTCCATATGCTTCAAAAATTTCTTCCTACTTGTTGCAATAACAGTATGGGAGTTAGAGTAATTGGAATTAGTTGTCAGCTCAATTATGAGAGTAAACCCATCTATCCCTCACTTATATCTTCTCCTTCGCTTCCGCCATCGCCATTGCCATCCTCACCTCCGACACCTGGTAGAAGTAGAAGTAGTGTTGTAGTCGTTGTGGTGGCCGTAGTTCCTACTGTCATTCTTCTTGTTGCCATTTTCATCATTTTGATATTGAGGAAGCGAAAGCACAAAAGACCATTAGACAATTTCGAACGTGCATCTCTTGAAGACACCACTGATGAAATTAGCTGTGTGGAGATGATTCAATTTGATCTTGATAGCATTAAAGCTGCAACAAACAACTTCGCTAGTGAAAACAAGCTCGGACAGGGTGGGTTTGGAGTTGTTTATAAGGGTAGGCTAGCTGTTGGACGACCTATAGCTGTGAAGAGGCTTGCGAACAATTCACAACAAGGCGATGCTGAATTCAAAAATGAAGTCCTTTTGGTGCTCAAGCTTCAACACCGAAACTTGGTTAGGCTATTGGGATTCTGTTTGCAAGGAAGCGAAAGACTGCTTATATATGAGTTCATACCAAATGGCAGCCTTGACAACTTCATATTTGGTATACAACAATTCTTCTTCTTCTTCTTGATCTTAAGACGTCCTTTCATACAATTGACAAATGATTTTACGTACATGGATGATCATGTAGATCCTCAGAAGCGGACACAATTAAATTGGGAAAGACGATACAAGATTATAAATGGCATTGCACGAGGACTTCTTTACCTTCATGAAGATTCTCGCTTTCGCATCATACATCGTGATCTCAAAGCTAGCAATATTTTGTTGGATCAAGAAATGAATCCAAAGATTGGAGATTTTGGTATGGCAAGATTATTCGAAGTAGATCAGACTCGAGGCAATACAAATAGAATAGTTGGGACTTTTGGCTATATGGCTCCAGAGTATGTAAAGCATGGACATTTTTCAGTAAAATCAGATGTTTTTAGTTTTGGTATTTTGGTTCTTGAGATTTTGAGCGGCAAAAAAAATAACAATTCTCACAATGGAGAACATTCCGAAGATCTCTCAAGCTTTGTGTGGACAAATTGGAGGGCAGGAACAACTACAAATGTCATAGATTCAACTCTTACCGTTGGTTCAAGGATGGATATGGAAAGATGCATTCATATTGGACTATTGTGCATTCAAGAAAATTTAGTAGATCGACCAACAATGAATTCAATAGTTACAATGCTAAGTAGTTCTACTCTCACTCTCCCTATACCCCATAAACCAGCATTCTTCCTGCATAGTATGTCTACCAACAATCACATAGTATCAAGGTCAGATGGAAATGGGCGTGAAAACCCCTCCATTCAACCTTCAATCAACAACCTTTCGATTACAGAGATCCATGCTCGACAAGGACCGATAATGAAGACCCACGAATCCAATCCATCCATCCCTACTCCCCCTTCAATCTATTATTTAATTCTCTCTTCTCAATTTTATATCCCCCGGGAGAATAAAATGGATATGGGAATTTTGTTTTTGAGATTATCCATTAGGCTTTTCCTCCTCTTCTCTCTTTTTTCACAACTGATGTTTATAACCACAACAACATCTCAGCCCGACTTCTTTTATCACATCTGTTCAGAAAAAGGAAACTACACCAACAACAGCCCTTTCGAGAAAAATCTTGACAATGTTCTTGCTTCAATCTCCTCCAATTCCAACACCGACACGCGCCACGTCGACTACGGTTTCTATAACGCAACCTCCGGAGAAGATCCCGACACAGCCAACGCTAAGGTTCTTTGTCGTAAAGGAGTTCCGTTGGAACAATGCAGAACTTGCGTGAATAACTCTGTTCTTAGAATTAAACAAAACTGTCCGAACCAGAAGGAAGGTGCAGGATGGTACGGCGATTGCCAGATTCTTTACTCAAACAACTCTGTTCACGATGAGACAGACTTGCCTGCCTTTCGAATTTTATTCAACACCGGTAGAGCCCCAGACCAGAACGGTTTCAATGAGGAACTCAGAGAGTTATTGGATGGACTGCGCGTGGAGGCTGCATCAGGGACTTCGATTCGGAAGTCTGCAGCCGGAGATGTGAAGCTTCAAAATCCGAATACTTATACTATATATGGGCTTGTTGATTGTTTTCCCGACATGTCGTACTTCAGTTGTGATGTCTGCCTCAGTCGGCTTCAAAGTAATCTTCCTACTTGTTGTAGCGGCAGCATAGGAGCAAGATTGATTGCAGCTAGTTGTCAAATCAATTATGAAATTCACCCTCTCTATGAATCACTTCTCCCTCCGCCCCCATCCCCGCTCCCGCTTCGGCCGTCAGATTCTGATCTCCCTGATTTCCCCACTTCATCTTCTCCGCCAACACAAGGAAATAATAGCAATACTATTATAATAGTTATAGTTGTTACAGTGTCCATCGCTTCTGTCATCATTCTCATTGTTGGGATTTGCTTGGTTCGGAGATTCAGAAAAAGAAAGCAGAAAGGACTACTAAGAAAATTTGGAAATGTTGATGTTGAAGATGCCAGTGATGAAATTAGCATTGTGGAAACAATTCAATTTGATTTTGATGTCATTAAAGATGCAACTAATGACTTCTCAAATGAAAACAAGCTAGGACAGGGTGGGTTTGGAGCTGTTTACAAGGGTAAGCTACCTAATGGACAACATATTGCAGTCAAGAGGCTTGCGCATAATTCACAACAAGGAGATGCTGAATTCAAAAATGAAGTCCTTTTGGTAGTCAAACTTCAACATCGAAATTTGGTTAGGCTATTGGGATTCTGCTTGCAAGGAAGCGAAAGACTTCTCATTTATGAGTTTGTACCAAATGGCAGCCTTGACCATTTCATATTTGATTTTGAGAAGCGTATACTCTTGGATTGGGGAAGACGATACAAAATCATAAATGGCATTGCACGAGGACTTCTTTATCTTCATGAAGATTCTCGCCTTCGAATCATTCATCGTGATCTCAAAGCTAGCAATATTCTGTTAGATGAAGAAATGAATCCGAAGATTGCCGATTTTGGTCTAGCAAGATTGTTCGAAGTAGATGAAACTCAAGGCAATACAAGTAGAATTGTGGGGACTTATGGCTATATGGCTCCTGAGTATATAACGCATGGACAATTTTCGATAAAATCTGATGTCTTTAGTTTTGGTGTTTTGGTTCTTGAAATTGTGAGCGGCCAGAAAAACAATTGTCTTTCCAACGGAGAAAATAGAGAAGATCTCACCAGCTTTACTTGGAATAATTGGAGGGCAGGAGCAACAACAAATGTCATAGATTCAACACTTGGTATTGGTTCAAGAATTGAAATGATAAGATGCATTCACATTGGACTATTGTGTGTTCAAGAAAATGTAGCAAACCGACCAACAATGGCTTCAGTGGTTATGATGCTAAGTAGTTCTTCTCTTACTCTCCCTATACCCTCTAAACCTGCATTCTTTATGGATAGTGTCACCGGTGGATCCAACACAAATGAGTTTAATCATTCTAAAAGTACAACTCTTCAACATTCGGATAACGAAACTTCAGTTACAGAACTTCATCCTCGTTAA 4296 41.13 MGSLCCETPFFLVSFILLLVLQHSMFPTTNSQPDFIYSSCSNNAIYTNNSPFKKNLHNVLFSISSQTTLLDYGRFYNATSGEDPDRATALALCRGGVPLEQCRSCVYNSTLRITKDCPKQREAEGWYSDCQIRYSNNSIYGVLVRNIKYVVWNRRTAVNPDGFNKVLRSLLDELGREAASGSSVQKSAWGDKKVPSSSVDIIYGLVDCLPDLSYLDCLDCLHMLQKFLPTCCNNSMGVRVIGISCQLNYESKPIYPSLISSPSLPPSPLPSSPPTPGRSRSSVVVVVVAVVPTVILLVAIFIILILRKRKHKRPLDNFERASLEDTTDEISCVEMIQFDLDSIKAATNNFASENKLGQGGFGVVYKGRLAVGRPIAVKRLANNSQQGDAEFKNEVLLVLKLQHRNLVRLLGFCLQGSERLLIYEFIPNGSLDNFIFGIQQFFFFFLILRRPFIQLTNDFTYMDDHVDPQKRTQLNWERRYKIINGIARGLLYLHEDSRFRIIHRDLKASNILLDQEMNPKIGDFGMARLFEVDQTRGNTNRIVGTFGYMAPEYVKHGHFSVKSDVFSFGILVLEILSGKKNNNSHNGEHSEDLSSFVWTNWRAGTTTNVIDSTLTVGSRMDMERCIHIGLLCIQENLVDRPTMNSIVTMLSSSTLTLPIPHKPAFFLHSMSTNNHIVSRSDGNGRENPSIQPSINNLSITEIHARQGPIMKTHESNPSIPTPPSIYYLILSSQFYIPRENKMDMGILFLRLSIRLFLLFSLFSQLMFITTTTSQPDFFYHICSEKGNYTNNSPFEKNLDNVLASISSNSNTDTRHVDYGFYNATSGEDPDTANAKVLCRKGVPLEQCRTCVNNSVLRIKQNCPNQKEGAGWYGDCQILYSNNSVHDETDLPAFRILFNTGRAPDQNGFNEELRELLDGLRVEAASGTSIRKSAAGDVKLQNPNTYTIYGLVDCFPDMSYFSCDVCLSRLQSNLPTCCSGSIGARLIAASCQINYEIHPLYESLLPPPPSPLPLRPSDSDLPDFPTSSSPPTQGNNSNTIIIVIVVTVSIASVIILIVGICLVRRFRKRKQKGLLRKFGNVDVEDASDEISIVETIQFDFDVIKDATNDFSNENKLGQGGFGAVYKGKLPNGQHIAVKRLAHNSQQGDAEFKNEVLLVVKLQHRNLVRLLGFCLQGSERLLIYEFVPNGSLDHFIFDFEKRILLDWGRRYKIINGIARGLLYLHEDSRLRIIHRDLKASNILLDEEMNPKIADFGLARLFEVDETQGNTSRIVGTYGYMAPEYITHGQFSIKSDVFSFGVLVLEIVSGQKNNCLSNGENREDLTSFTWNNWRAGATTNVIDSTLGIGSRIEMIRCIHIGLLCVQENVANRPTMASVVMMLSSSSLTLPIPSKPAFFMDSVTGGSNTNEFNHSKSTTLQHSDNETSVTELHPR 1431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2313604 2320558 - MELO3C007358.2.1 Cme08g00373 334636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00373 1431 SMART serkin_6 1109 1384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g00373 1431 SMART serkin_6 350 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g00373 1431 MobiDBLite consensus disorder prediction 1406 1423 - -
Cme08g00373 1431 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 16 673 - -
Cme08g00373 1431 Pfam Protein tyrosine and serine/threonine kinase 1111 1377 IPR001245 GO:0004672|GO:0006468
Cme08g00373 1431 Pfam Protein tyrosine and serine/threonine kinase 353 650 IPR001245 GO:0004672|GO:0006468
Cme08g00373 1431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 501 513 IPR008271 GO:0004672|GO:0006468
Cme08g00373 1431 ProSiteProfiles Gnk2-homologous domain profile. 776 884 IPR002902 -
Cme08g00373 1431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1230 1242 IPR008271 GO:0004672|GO:0006468
Cme08g00373 1431 Gene3D Phosphorylase Kinase; domain 1 1078 1184 - -
Cme08g00373 1431 Gene3D Phosphorylase Kinase; domain 1 316 425 - -
Cme08g00373 1431 ProSiteProfiles Protein kinase domain profile. 1109 1384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g00373 1431 Gene3D Transferase(Phosphotransferase) domain 1 461 656 - -
Cme08g00373 1431 Gene3D Transferase(Phosphotransferase) domain 1 1185 1385 - -
Cme08g00373 1431 ProSiteProfiles Gnk2-homologous domain profile. 34 139 IPR002902 -
Cme08g00373 1431 SUPERFAMILY Protein kinase-like (PK-like) 1097 1399 IPR011009 -
Cme08g00373 1431 ProSitePatterns Protein kinases ATP-binding region signature. 1115 1137 IPR017441 GO:0005524
Cme08g00373 1431 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 764 1402 - -
Cme08g00373 1431 Gene3D - 774 883 IPR038408 -
Cme08g00373 1431 Gene3D - 32 138 IPR038408 -
Cme08g00373 1431 Gene3D - 892 998 IPR038408 -
Cme08g00373 1431 Gene3D - 145 253 IPR038408 -
Cme08g00373 1431 MobiDBLite consensus disorder prediction 1406 1431 - -
Cme08g00373 1431 ProSiteProfiles Gnk2-homologous domain profile. 890 999 IPR002902 -
Cme08g00373 1431 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 16 673 - -
Cme08g00373 1431 Pfam Salt stress response/antifungal 40 136 IPR002902 -
Cme08g00373 1431 Pfam Salt stress response/antifungal 903 995 IPR002902 -
Cme08g00373 1431 Pfam Salt stress response/antifungal 782 881 IPR002902 -
Cme08g00373 1431 Pfam Salt stress response/antifungal 160 251 IPR002902 -
Cme08g00373 1431 CDD STKc_IRAK 1115 1372 - -
Cme08g00373 1431 CDD STKc_IRAK 356 650 - -
Cme08g00373 1431 ProSiteProfiles Protein kinase domain profile. 350 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g00373 1431 SUPERFAMILY Protein kinase-like (PK-like) 338 677 IPR011009 -
Cme08g00373 1431 MobiDBLite consensus disorder prediction 1008 1031 - -
Cme08g00373 1431 ProSiteProfiles Gnk2-homologous domain profile. 145 254 IPR002902 -
Cme08g00373 1431 ProSitePatterns Protein kinases ATP-binding region signature. 356 378 IPR017441 GO:0005524
Cme08g00373 1431 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 764 1402 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00373 Cme-Chr8:2313604 Cme12g01450 Cme-Chr12:22242891 1.92E-139 dispersed
Cme12g01460 Cme-Chr12:22317779 Cme08g00373 Cme-Chr8:2313604 2.62E-15 dispersed
Cme08g00372 Cme-Chr8:2303496 Cme08g00373 Cme-Chr8:2313604 6.19E-115 tandem
Cme08g00373 Cme-Chr8:2313604 Cme08g00374 Cme-Chr8:2320685 0 tandem
Cme08g00935 Cme-Chr8:6159855 Cme08g00373 Cme-Chr8:2313604 1.04E-43 transposed
Cme08g00936 Cme-Chr8:6162713 Cme08g00373 Cme-Chr8:2313604 4.22E-40 transposed
Cme01g00403 Cme-Chr1:2864020 Cme08g00373 Cme-Chr8:2313604 6.21E-30 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65056 PF07714 PK_Tyr_Ser-Thr 8.10E-47 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00373 - - cmo:103484586 2593.15