Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00374 ATGGGAAGGTTAAGTTTCAAACCCCTTTTCTTCATTCTCGCAGCCGCACACTTGATCTTTCCCACTACTTCTCAGCCAGATTTTTTATACCGCACCTGTTCCAACAACAGCAACTACACACAAAACAGCACTTTCAACAAAAACCTCAACAACGTACTTCTCTCCATCTCTTCCAACACCCGATTCAATAATTACAGTTTCTATAACGCCACTTCCGGCCACGACCCCGACCGAGCCACTGCTCTCGCTCTTTGCCGCGGAGGCGTTCCCTTAGAACAATGTAGAACCTGTGTCTATAACTCCACCCTCAGAATCCTTCAAGATTGTCCAAACCAGAAAGAAGCTGCTGTGTGGTATCAAGATTGTCAAATTCGTTACTCAAACAACTCTATTTATGGCGTGGAAGACAGCACTCCCCAGATTTTCTTCTGGAACTTTCGAACAGCGGAAGATCCGGTGGGGTTCAATGATGCGTTATGGAATTTGCTTGACCGGCTGAGGAAGGAGGCGGCGTTGGGGACCTCTGTTCTGAAGTCGGCTTGGGGAGGGGAGAAGATTCGAAATCGGAGTGTGGATATATTATATGGATTGGTTGATTGCTATCCTGATTTGTCTTATTTGGGTTGTTTTGATTGCCTTCGGAATCTTCAAACTGTTATTCCAAGTTGTTGTAATGCGAGTATAGGGGTGAGATTAATTGCAACTAGTTGTCAACTCAATTATGAGCTCCACCCCATTTATCCCTTTCCTCCATCTCCACTCCCGCCTTCTTCTCCTCCGGCCTTGCTGTCTCCATCTTCATCTCCGAAACCTGGAAATAACGACAATACTGGTAGAACTAGAACTATTGTCATCATCACAGTGACCGTCGTTTCTGCTGCCATTTTTCTTGTTGCCCTTTTTATCATTTTGATATTGAGGAAGCAAAATCACAAGAGACCATCAGACAATTTTGAAGGGTTAGATATATCCGTTGGAGATACCGATAATGAAATTAGCAGTGTGGAGACGATTCAATTTGATTTTGATAGCATTAAAGCCGCAACAAATGACTTCGCAAGCGAAAACAAGCTTGGACAAGGTGGATTTGGAGTTGTTTATAAGGGTAAGTTACCTAATGGACAACTTATAGCTGTGAAGAGGCTTGCGAAGAATTCACATCAAGGAGATGTTGAATTCAAAAATGAAGTCCTATTGGTGCTGAAGCTTCAACATCGAAACTTGGTTAGGCTATTGGGATTCTGTTCGCAACAAACCGAAAGACTTCTCATATATGAGTTTGTACAAAATGGCAGTCTTGACCACCTTCTATTTGATTCTGAAAAGCGGAGACTTTTAGACTGGGAAACGCGTTACAAAATCATAAATGGCATTGCACGAGGACTTCTTTACCTTCACGAAGATTCTCAAATTCGAATTGTACATCGTGATCTTAAGCCTAGCAACATTTTGTTAGATGTAGATATGAATTCAAAGATTTCAGATTTTGGTATGGCAAGATTGTTCGAAGTAGATCAGACTCGAGGCAATACAAGTAGAATTGTGGGAACTTATGGTTATATGGCTCCGGAGTATGCGATACATGGACATTTCTCAGTAAAATCAGATGTCTTTAGTTTTGGTGTTTTGGTCCTTGAAATTATAAGTGGTAGAAAAAATAACAATTTTTACAATGGAGAAGCCTTGGAAGATCTCACAAGCTTCGCATGGACAAATTGGAGAGCAGGAACAACTTTGAATGTCATAGATTCAACACTTACCTCTAGTTTAAGATTTGATATGATAAGATGCATTCACATTGGACTATTGTGTGTACAAGAAAATATAGCAAATCGACCGACAATGACTTCCATAGTTATGATGCTAAGTAGTGCTTCCCTCACTCTTCCTATACCCTCTAAACCAGCATTTTTTATGCATACTACTACAAATAGATATGACACAACATTAAGATCAGACGAATCTAATAGTGAAAGTCTGTCTGATCAACATTCGAGAAATAATACTTCAATCACAGAGATTCATCCTCCATATATAAATGGCATTATTGAGATATCAAATATCAATCAACTGGGAGCTTCAAAAAGAAAAAAGGAAAAAGATCGCTCAATTTCAGAAATATATACGATTGGTAACAAAGAGATGGGTTGTAGGTTGATTTGGGAAACGAATTTGTATTTCATGCTGTACTCTTTCATTCTGCCTCTCCCACATTTAATGTTTCACACAACTTCACAGCTGCCCCCCTTTTTACAATTTACTTGTTCCGACGAAGCTGGCAACTACACCAACAACACCACTTTCAAGAAAAATCTCGACACCGTACTTCTCTCCATCTCTTCTAAAACCAGCTATATCGATTACGGTTACTACAACGAAACTGCAGGCCAAGAACCGGACCGAGCCACGGCTTTAGCGCTTTGCCGTGGAGGCGTTGAGTTAGAACAATGTAGAAGGTGTGTGTATAACTCAACGCTGAGGATTACTCAAGATTGTCCAAACCAGAAAGAGGCAGAAGGATTGTACCAGGATTGTCAAATTCGTTACTCAAACAACTCTATTTATGGGGTGAAAGACAACACTGTGCAGTTGTTTTTAGTCAACGGTGGAAGAGTTGAAGACTGGGTTGGGTTCAATATGGCGCTAAGAAGTTTGTTTGATCGGTTGAAAATGGAAGCTTCGTCGGGGAGTTCGATTCAAAAGTCGGCTTGGGGAGGGGAGAAGGTTCGAAGTCCGAGTATGGATACCATATATGGATTGGTTGATTGTTTTCCTGATTTGTCTTATTTGGACTGTTTTGATTGCCTCAATCAGCTTCAAGCTTCTCTTCCTAGTTGTTGTAATGCCAGTATAGGGGTCAGATTAGCTGCAACTAGTTGTCAACTCGCTTATGAGCTCCACCCCGTCTATGCTCCGCTTCCGCCTCCACCTTCCCCTCTGTCTCTGTCTCCTTCCCCCTCGCATGAAAATAATGACAACAGTGGTAGAAGTAGAACTACTTTTGTAATTATTATGGTGACCATCGTTTCTGCTGCTGTCATTCTTCTTGTTGTCATTTTTACCATTTTGATACTGAGGAAGAAAAAACGCAAAAGACCATCGGACAATTTCGAAGATATATCTGCTGGAGGCACCGGTAATGAGATAATTAGTGTGGAGACGATTCAATTTGATTTTGATAGCATTAAGGTCGCAACAAATGACTTTGCAAGTGAAAACAAGCTTGGACAGGGTGGATTTGGAGTTGTTTATAAGGGTAAACTACCTGATGGGCGAGCTATAGCTGTGAAGAGGCTTGCAAGTAGTTCACAACAAGGGGATGTTGAATTCAAAAACGAAGTTCTTTTAATGCTCAAACTTCAACATCGAAACTTAGTTAGACTATTGGGATTCTGTTTGCAAGGGAGTGAGCGACTTCTTATATATGAGTTTATACAAAATGGCAGCCTTGACCACTTCATATTTGATTCTGCGAAGCGGGGACTGTTAGATTGGGAAACACGTTGCAAAATCATAAATGGCATTGCACGAGGACTTGTTTACCTTCATGAAGATTCTCAACATCGAATCATACATCGTGATCTTAAAGCTAGTAATATTTTGTTGGATGAAGATATGAATTCAAAGATTTCAGATTTTGGTATGGCAAGATTGTTCGAAGTAGACCAAACTCAAGGCAATACGAATAGAGTTGTGGGAACTTATGGCTATATGGCTCCAGAGTATGTAATACATGGACGGTTCTCAGTGAAATCAGATGTCTATAGTTTTGGTATTTTAGTGCTTGAGATTTTGAGTGGTCAAAAAAACAATTCTTTTCACAATAAAGAACTTTCGGAAGATCTCTCGAGCTTTGCATGGACAAATTGGATGGCAGGAACAATTTCAAATATCATAGATTCAACACTCACCGTTGGTTCAAGAATTGAGATGATAAGATGCATCCATATTGGACTATTGTGTGTTCAAGAAAATTTAACAAACCGACCAACCATGACTACAGTAGTTATGATGTTAAGTACTTCTTCTCTCACTCTCCCTATGCCCTCTAAACCAGCATTCTTTTTGCATAGTTCTACAAATAGATATAACGGCACACTTGCAAGGCCAGGTGGAGCTAATTGTGAAAATGCATCTATTCAACTTTCGAAGAATTACATTCCAATTACGGAGGTGCATCCTCGTTAG 4188 40.35 MGRLSFKPLFFILAAAHLIFPTTSQPDFLYRTCSNNSNYTQNSTFNKNLNNVLLSISSNTRFNNYSFYNATSGHDPDRATALALCRGGVPLEQCRTCVYNSTLRILQDCPNQKEAAVWYQDCQIRYSNNSIYGVEDSTPQIFFWNFRTAEDPVGFNDALWNLLDRLRKEAALGTSVLKSAWGGEKIRNRSVDILYGLVDCYPDLSYLGCFDCLRNLQTVIPSCCNASIGVRLIATSCQLNYELHPIYPFPPSPLPPSSPPALLSPSSSPKPGNNDNTGRTRTIVIITVTVVSAAIFLVALFIILILRKQNHKRPSDNFEGLDISVGDTDNEISSVETIQFDFDSIKAATNDFASENKLGQGGFGVVYKGKLPNGQLIAVKRLAKNSHQGDVEFKNEVLLVLKLQHRNLVRLLGFCSQQTERLLIYEFVQNGSLDHLLFDSEKRRLLDWETRYKIINGIARGLLYLHEDSQIRIVHRDLKPSNILLDVDMNSKISDFGMARLFEVDQTRGNTSRIVGTYGYMAPEYAIHGHFSVKSDVFSFGVLVLEIISGRKNNNFYNGEALEDLTSFAWTNWRAGTTLNVIDSTLTSSLRFDMIRCIHIGLLCVQENIANRPTMTSIVMMLSSASLTLPIPSKPAFFMHTTTNRYDTTLRSDESNSESLSDQHSRNNTSITEIHPPYINGIIEISNINQLGASKRKKEKDRSISEIYTIGNKEMGCRLIWETNLYFMLYSFILPLPHLMFHTTSQLPPFLQFTCSDEAGNYTNNTTFKKNLDTVLLSISSKTSYIDYGYYNETAGQEPDRATALALCRGGVELEQCRRCVYNSTLRITQDCPNQKEAEGLYQDCQIRYSNNSIYGVKDNTVQLFLVNGGRVEDWVGFNMALRSLFDRLKMEASSGSSIQKSAWGGEKVRSPSMDTIYGLVDCFPDLSYLDCFDCLNQLQASLPSCCNASIGVRLAATSCQLAYELHPVYAPLPPPPSPLSLSPSPSHENNDNSGRSRTTFVIIMVTIVSAAVILLVVIFTILILRKKKRKRPSDNFEDISAGGTGNEIISVETIQFDFDSIKVATNDFASENKLGQGGFGVVYKGKLPDGRAIAVKRLASSSQQGDVEFKNEVLLMLKLQHRNLVRLLGFCLQGSERLLIYEFIQNGSLDHFIFDSAKRGLLDWETRCKIINGIARGLVYLHEDSQHRIIHRDLKASNILLDEDMNSKISDFGMARLFEVDQTQGNTNRVVGTYGYMAPEYVIHGRFSVKSDVYSFGILVLEILSGQKNNSFHNKELSEDLSSFAWTNWMAGTISNIIDSTLTVGSRIEMIRCIHIGLLCVQENLTNRPTMTTVVMMLSTSSLTLPMPSKPAFFLHSSTNRYNGTLARPGGANCENASIQLSKNYIPITEVHPR 1395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2320685 2328162 - MELO3C007360.2.1 Cme08g00374 334637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00374 1395 ProSiteProfiles Gnk2-homologous domain profile. 27 131 IPR002902 -
Cme08g00374 1395 Pfam Protein kinase domain 353 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g00374 1395 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 10 ISOFORM X1 738 1363 - -
Cme08g00374 1395 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 10 ISOFORM X1 5 653 - -
Cme08g00374 1395 SUPERFAMILY Protein kinase-like (PK-like) 1057 1361 IPR011009 -
Cme08g00374 1395 MobiDBLite consensus disorder prediction 649 671 - -
Cme08g00374 1395 MobiDBLite consensus disorder prediction 257 276 - -
Cme08g00374 1395 Pfam Protein tyrosine and serine/threonine kinase 1072 1337 IPR001245 GO:0004672|GO:0006468
Cme08g00374 1395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 473 485 IPR008271 GO:0004672|GO:0006468
Cme08g00374 1395 ProSiteProfiles Protein kinase domain profile. 1069 1344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g00374 1395 Gene3D Phosphorylase Kinase; domain 1 323 427 - -
Cme08g00374 1395 Gene3D Phosphorylase Kinase; domain 1 1039 1144 - -
Cme08g00374 1395 Gene3D - 860 968 IPR038408 -
Cme08g00374 1395 Gene3D - 140 245 IPR038408 -
Cme08g00374 1395 Gene3D - 25 130 IPR038408 -
Cme08g00374 1395 Gene3D - 750 853 IPR038408 -
Cme08g00374 1395 ProSiteProfiles Gnk2-homologous domain profile. 860 969 IPR002902 -
Cme08g00374 1395 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 5 653 - -
Cme08g00374 1395 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 738 1363 - -
Cme08g00374 1395 CDD STKc_IRAK 358 622 - -
Cme08g00374 1395 ProSitePatterns Protein kinases ATP-binding region signature. 358 380 IPR017441 GO:0005524
Cme08g00374 1395 ProSitePatterns Protein kinases ATP-binding region signature. 1075 1097 IPR017441 GO:0005524
Cme08g00374 1395 CDD STKc_IRAK 1075 1339 - -
Cme08g00374 1395 Pfam Salt stress response/antifungal 878 965 IPR002902 -
Cme08g00374 1395 Pfam Salt stress response/antifungal 33 128 IPR002902 -
Cme08g00374 1395 Pfam Salt stress response/antifungal 755 851 IPR002902 -
Cme08g00374 1395 Pfam Salt stress response/antifungal 153 242 IPR002902 -
Cme08g00374 1395 ProSiteProfiles Gnk2-homologous domain profile. 137 246 IPR002902 -
Cme08g00374 1395 Gene3D Transferase(Phosphotransferase) domain 1 428 629 - -
Cme08g00374 1395 Gene3D Transferase(Phosphotransferase) domain 1 1145 1346 - -
Cme08g00374 1395 SMART serkin_6 1069 1320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g00374 1395 SMART serkin_6 352 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g00374 1395 ProSiteProfiles Protein kinase domain profile. 352 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g00374 1395 SUPERFAMILY Protein kinase-like (PK-like) 340 657 IPR011009 -
Cme08g00374 1395 ProSiteProfiles Gnk2-homologous domain profile. 750 854 IPR002902 -
Cme08g00374 1395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1190 1202 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00406 Cme-Chr1:2874579 Cme08g00374 Cme-Chr8:2320685 2.49E-30 dispersed
Cme08g00372 Cme-Chr8:2303496 Cme08g00374 Cme-Chr8:2320685 7.30E-122 dispersed
Cme08g00374 Cme-Chr8:2320685 Cme12g01450 Cme-Chr12:22242891 7.27E-170 dispersed
Cme08g00935 Cme-Chr8:6159855 Cme08g00374 Cme-Chr8:2320685 2.38E-47 dispersed
Cme08g00936 Cme-Chr8:6162713 Cme08g00374 Cme-Chr8:2320685 2.88E-44 dispersed
Cme08g00373 Cme-Chr8:2313604 Cme08g00374 Cme-Chr8:2320685 0 tandem
Cme08g00374 Cme-Chr8:2320685 Cme08g00375 Cme-Chr8:2331578 2.36E-154 tandem
Cme08g00934 Cme-Chr8:6159582 Cme08g00374 Cme-Chr8:2320685 7.44E-26 transposed
Cme12g01873 Cme-Chr12:24926920 Cme08g00374 Cme-Chr8:2320685 1.53E-107 transposed
Cme12g01461 Cme-Chr12:22321327 Cme08g00374 Cme-Chr8:2320685 4.24E-09 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65057 PF07714 PK_Tyr_Ser-Thr 5.40E-49 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00374 - - cmo:103484586 1611.28