Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00375 ATGAGAAGACATAAATACAAAATGCCATCCGACGAAGTTCAAAGCATTGCATTCCAAGAAGCAACAGATGAAATTAGCGATGTGGAGACTATTCAACTTGATTTTGAGACGATCAAAGTAGCAACAAATGTGTTCTCAGATGAAAATCAACTTGGACAAGGTGGATTTGGAGTTGTCTACAAGGGAAAGTTGTGTAATGGACAAGACATAGCAGTGAAGAGGCTATCAAGAGATTCAAATCAAGGAGACTTGGAATTCAAAAATGAAGTTCTTGTAATGGCCAAGCTTCAACACAGGAACTTAGTTAGGCTGCTAGGGTTTAGTTTGGATGGGAATGAAAAGCTTCTCATTTATGAGTTTCTACCAAATGCCAGCCTTGATCACTTCATCTTCGATGTTGTCAGACGCACAATTTTGGATTGGCAAACACGATACAAAATTATAAATGGTATTGCTCGAGGATTGGTATACCTCCATGAAGACTCCCGTATTCGAATCGTTCATCGTGATCTTAAAGCTAGCAATATTTTGTTGGATGAAAATATGAATCCTAAGATTGCAGACTTTGGCATGGCAAAGTTATTCAAATTAGACGAGACTAGACGTCATACTCAAAAAATTGTGGGAACTTATGGTTATATGGCTCCAGAATATGCATATCATGGACAATTCTCACCAAAATCAGACGTGTTTAGTTTTGGAATTCTAATTCTTGAAATTATAAGTGGCCAGAAAAATACTGATTTTTGCAATGACAACGGAGAGCGAGACATAGATCTTTTAAACTTTGCATGGAAAAGTTGGAGGGCAGGAAAACCTGAAAATGTAATAGATAAGATACTAATATCAAGTTCGAACGTTGAAATGATAAGATGTATTCAAATTGGATTGTTATGTGTTCAAGAGAACGTGGTGGATCGACCAACAATGGCTTCAGTAATTTTGATGCTAAACAGTTTCTCGCTTACACTCTCTCTTCCCTCTAAACCTGGCTTTCTTTTGTACAGTAATAATGACTGCTCAAATGCACATAATTCCCAAACAGCTCCTCCTCCAGCTTCAAAAAATGGTATGTCTGTTTCTGAATTTTATCCTCGTTAG 1101 37.24 MRRHKYKMPSDEVQSIAFQEATDEISDVETIQLDFETIKVATNVFSDENQLGQGGFGVVYKGKLCNGQDIAVKRLSRDSNQGDLEFKNEVLVMAKLQHRNLVRLLGFSLDGNEKLLIYEFLPNASLDHFIFDVVRRTILDWQTRYKIINGIARGLVYLHEDSRIRIVHRDLKASNILLDENMNPKIADFGMAKLFKLDETRRHTQKIVGTYGYMAPEYAYHGQFSPKSDVFSFGILILEIISGQKNTDFCNDNGERDIDLLNFAWKSWRAGKPENVIDKILISSSNVEMIRCIQIGLLCVQENVVDRPTMASVILMLNSFSLTLSLPSKPGFLLYSNNDCSNAHNSQTAPPPASKNGMSVSEFYPR 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2331578 2333554 - MELO3C007362.2.1 Cme08g00375 334638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00375 366 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 22 347 - -
Cme08g00375 366 SMART serkin_6 45 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g00375 366 ProSiteProfiles Protein kinase domain profile. 45 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g00375 366 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 25 22 347 - -
Cme08g00375 366 CDD STKc_IRAK 51 318 - -
Cme08g00375 366 Gene3D Phosphorylase Kinase; domain 1 9 120 - -
Cme08g00375 366 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Cme08g00375 366 SUPERFAMILY Protein kinase-like (PK-like) 34 341 IPR011009 -
Cme08g00375 366 MobiDBLite consensus disorder prediction 344 366 - -
Cme08g00375 366 Gene3D Transferase(Phosphotransferase) domain 1 121 325 - -
Cme08g00375 366 Pfam Protein kinase domain 46 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g00375 366 ProSitePatterns Protein kinases ATP-binding region signature. 51 73 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00375 Cme-Chr8:2331578 Cme12g01454 Cme-Chr12:22280983 2.45E-144 dispersed
Cme08g00374 Cme-Chr8:2320685 Cme08g00375 Cme-Chr8:2331578 2.36E-154 tandem
Cme08g00375 Cme-Chr8:2331578 Cme08g00376 Cme-Chr8:2339329 2.63E-111 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65058 PF00069 Pkinase 5.90E-47 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00375 - - csv:116401663 606.675