Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00385 ATGGCTACCCATCAGCCACTTCTTCATCTTCAACCCCCCAAAACTTCCTGCTCCAAAACCATTTCCACAATCCTCTGTTTCGCTGTAGTTTTGTGCTCAGCCATTTTCGTTACTAACAAGTTCATCAAATTAAACCCATATGAAAATGATCTTCCCTTCCTTCACAACATATGCCACAAGGCTTATAACCCATCATCCTGCATTGAAATGGCCGCCTCAGAATTTCCCTTGAGCATAATCAAAACCACGAACGAGGAACATTTCTTACAGTCTTTCCTGAAGAAATCCATGCCTAAAGTAATCAACACAATTGAGAGAGCCAAAGATCTCCGCCAAAGAATCAACAGCCCTCGCGGTGAAGGAGCTTTGGATGATTGTATCGAGCTTATGGAGATTTCAAACGGCCGAATCATGGACTCTGTTTTGGCTCTGAAGAACAGAACGAGTGGCTACATCGAAAGTTCCCACACATGGCTGAGTAGCGTGCTGACGAACCACGTCACGTGCTGGGATGAGGTGGAGAGTTCATTATCCAGAGCGGCGGCAATGGATTTAGGGCTCGAAGAGTTGATTATGAGAGGGAGAAACTCGTTGGGGATGTTGGTTTCGATTTGGGGATTGGAAATTAAAAATTTGGGAGAGTTGGGGAAAAGAGGAAATGGGTATCCGAGTTGGTTGAAGAAAGGAGATCGGAGATTATTGGGGGTTTTGGGGAGAGAAATGGAACCGAATATCGTGGTGGCGAAGGATGGGAGTGGGAATTTCAAGACGGTGCAGGAGGCGGTTGAATCAGTTCCAGATAAGAGCAAGAACAGAATTGTTATATATGTGAAAAAGGGGACTTACAAGGAAAATGTGGAAGTGGGAAAGAAGAAAAAGAATGTAATGATCGTTGGAGATGGAATGGATTCCACCATTATAACCGGTAGCCTCAACGTCGTTGATGGATCAACAACTTTCAAATCTGCAACTGTAGCTGCGGTGGGAGATGGGTTTATAGCCCAAGACATTTGGTTCCAAAACACCGCGGGGCCGGCAAAGCACCAAGCCGTGGCGCTTCGGGTCGGAGCAGATCAATCGGTCATAAACCGGTGTCGTATCGACGCTTATCAGGACACACTCTACACACATTCCAACCGCCAATTCTACCGAGATTCCACCATCACCGGCACCGTCGACTTCATATTCGGTAACGCGGCCGTGGTTCTACAGAACTGTAAAATAGAGCCCCGACGACCGATGAACAACCAAGCCAACATGGTGACGGCACAAGGCCGAATCGACCCAAATCAGAACACTGGAACTTCGATCCAGCAATGCGATATCGTGGCAAGCTTCGACTTGGAGCCGGTTAAGAAGTCGATTAAGACATATCTGGGGCGACCATGGAAGGAGTATTCGAGGACCGTCGTCATGCAGTCGAGAATTGGCGATCTTATTCAACCAGCGGGCTGGGCCGAATGGAGTGGGGACTTTGCACTGAAAACGCTGTATTACGGGGAATACTCAAATACTGGGCCGGGCTCTGATGTTAGCAAGCGAGTTAAGTGGGCCGGTTATCATGTCATTACGAGCCCATCTGAGGCCCAAAAATTTACGGTGAATTCACTTATACAAGGAGGTGAATGGCTGGGCCCATCGGGCGCGAGTTTTATCCCAGGGCTGTGA 1668 47.9 MATHQPLLHLQPPKTSCSKTISTILCFAVVLCSAIFVTNKFIKLNPYENDLPFLHNICHKAYNPSSCIEMAASEFPLSIIKTTNEEHFLQSFLKKSMPKVINTIERAKDLRQRINSPRGEGALDDCIELMEISNGRIMDSVLALKNRTSGYIESSHTWLSSVLTNHVTCWDEVESSLSRAAAMDLGLEELIMRGRNSLGMLVSIWGLEIKNLGELGKRGNGYPSWLKKGDRRLLGVLGREMEPNIVVAKDGSGNFKTVQEAVESVPDKSKNRIVIYVKKGTYKENVEVGKKKKNVMIVGDGMDSTIITGSLNVVDGSTTFKSATVAAVGDGFIAQDIWFQNTAGPAKHQAVALRVGADQSVINRCRIDAYQDTLYTHSNRQFYRDSTITGTVDFIFGNAAVVLQNCKIEPRRPMNNQANMVTAQGRIDPNQNTGTSIQQCDIVASFDLEPVKKSIKTYLGRPWKEYSRTVVMQSRIGDLIQPAGWAEWSGDFALKTLYYGEYSNTGPGSDVSKRVKWAGYHVITSPSEAQKFTVNSLIQGGEWLGPSGASFIPGL 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2391384 2393669 + MELO3C007375.2.1 Cme08g00385 334648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00385 555 SUPERFAMILY Pectin lyase-like 242 554 IPR011050 -
Cme08g00385 555 CDD PMEI-like_4 51 204 - -
Cme08g00385 555 ProSitePatterns Pectinesterase signature 1. 269 288 IPR018040 -
Cme08g00385 555 PANTHER PECTINESTERASE 16 554 - -
Cme08g00385 555 ProSitePatterns Pectinesterase signature 2. 388 397 IPR033131 -
Cme08g00385 555 Pfam Plant invertase/pectin methylesterase inhibitor 53 179 IPR006501 GO:0004857
Cme08g00385 555 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 203 IPR035513 -
Cme08g00385 555 Gene3D - 238 555 IPR012334 -
Cme08g00385 555 TIGRFAM PME_inhib: pectinesterase inhibitor domain 25 174 IPR006501 GO:0004857
Cme08g00385 555 Pfam Pectinesterase 244 540 IPR000070 GO:0030599|GO:0042545
Cme08g00385 555 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 175 IPR035513 -
Cme08g00385 555 SMART PMEI_2 49 200 IPR006501 GO:0004857
Cme08g00385 555 PANTHER PECTINESTERASE 16 554 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00385 Cme-Chr8:2391384 Cme09g01544 Cme-Chr9:20495373 6.42E-151 dispersed
Cme08g00385 Cme-Chr8:2391384 Cme01g02759 Cme-Chr1:34704512 2.86E-152 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00385 K01051 - csv:101216377 1042.34