Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00387 ATGTTCGATCCAGATATGTTTGATACTACTCACCATCATATGCTTGAAGAGTTGGAAAATATGAGAGACGATGATTTTGACAACAAATCAGGTGCAGAAATCTTGGAATCTGCTTGTGGAATTGACCAACAACAACAACGTTCTAAAAAGAAACGTTACAATCGTCATACACAACATCAAATCCAAGAAATGGAAGCATTCTTTAAGGAATGTCCTCACCCAGATGATAAGCAGAGAATGGAGCTGAGTCGTGAGCTGGGGTTGGAGCCATTGCAAGTCAAGTTTTGGTTTCAAAACAAACGCACACAAATGAAGGCTCAACACGAGAGACATGAAAACGCAATACTGAAGGCCGAAAATGAGAAACTTCGTGCTGAGAATATACGTTATAGAGAAGCATTCGCTCATTCAACTTGCCCTAACTGCGGATCTTCCTCCACTGCACTCGGCGAAATGTCCTTTGACGACCAACATTTACGCATTGAGAATTCCCGCTTGCGAGATGAGATCGAGCGAATGAGTGGATATGGCTCAAAATGCACAAAGCCATACTACCAGCTTCCAACAAATGCTCCAACGCGATCTTTAGACTTGGGCATCACAAACTTCGGTCCACAGTCGTCGGGATTCGTAGGGGAAATGTATGGAGCAGCGGACTTTTTCCGGTCGATATCGAGGCCTTCGGAAGGTGAGAAGCCGGTGATCGTGGAGCTGGCGGTATCGGGGATGGAGGAATTGAGGAGAATGGCTCAGGGAGGGGAGCCATTGTGGGTTGCGGGAGATGGGAAGTCATCAGGGGAAGTGGTTCTTAATGAAGCGGAGTATTTGAGGAGTTTCGGAGGGGGAATTGTGGGAAAGCCCATGGGGTTTAGAACCGAAGCTTCACGAGTTTCAGCTGTTGTGTTCATGAACCATATGAAGTTGGTGGATATTTTTATGGATGCTACGCAATGGTCGACTGTGTTTTGCGGCATTGTTTCGAGAGCATCCACTGTGGAAATTCTTTCGCCTGGCTTATCTGGAAACTTCAATGGGGCCTTGCATGTGATGAGCGCTGAATTTCAAGTCCCATCGCCACTTGTTCCAACTCGTGAAAACTATTTCGTAAGATACTGCAAACAACAAACTGATGGTTCATGGGCAGTGGCTGATGTTTCCTTAGACACCTTGCGCCCTTCTCCCATCCCAAATACCCGAAGGAAACCCTCTGGTTGCTTAATTCAAGAATTACCCAATGGTTATTCCAAGATCACTTGGGTCGAACATGTAGAGGTCGACGAAACCGGCGTCCCCACAATGTACCGGACTCTTGTTAATTCCGGCCTCGCTTTCGGGGCTAAGCGATGGGTTGCTACCTTAGATCGCCAATCTGAGCGTTTCGCTACTTCAATCGCCACCACCATTCCCACCGGCGATTTACGCGTGATCTCAAGTATTGAAGGGAGGAAGAGTATGCTGAAGCTAGCAGAGAGAATGGTGACGAGCTTCTGCGCCGGTGTTGGTGCGTCCAGTGTACACGCTTGGACGGCATTACCCGCTGCAGCTGGCGATGAAGTACGTGTTGTGACGAGGAAGAGCACCGACGAACCAGGACGACCACCGGGTGTTGTGTTGAGCGCCGCCACGTCTTTTTGGATTCCGGTTTCACCTAAGGTTGTTTTTGATTTTCTTCGAAAAGAGAAATCTCGGAGCGAGTGGGATATTCTGTCAAATGGTGGATTAGTTCAGGAAATGGCGCACATAGCCAACGGCCGTCACTCAGGGAATTGTGTCTCCTTGCTTCGTGTCAATAGTGCGAATTCGAGCCAGAGCAATATGCTGATACTACAAGAAAGCTGCACGGACTCAACGGGATCGTACGTTATTTATGCTCCGGTGGACACCGTGGCAATGAACGTCGTGCTAAGTGGTTGCGATCCTGATTACGTGGCGCTTCTACCGTCGGGATTCGCCATACTTCCAGACGGACCCGGCGGAGGAGGAAACAACGGCGGCGGAATTCTAGAGCTGGGATCGGGAGGGTCACTCATCACGGTTGCATTTCAAATCCTGGTTGATTCAGTTCCAACGGCAAGACTTTCAATTGGATCAGTAGCCACCGTTAACAGTCTCATCAAATGCACGGTTGAGAGAATCAGAGCCGCTGTGATGCTAGAGGAAGAGGAGGAGATGAGAATTAGTCAAGAACGCACCTTGAAACGTGGCGGTGCTTTTAAAGACAGAATGTGGAGAACGAGAGAAATTGAGGAGGTTCGGGCATTGACTTTATTTACTCAAACCTTCAACTAG 2289 48.32 MFDPDMFDTTHHHMLEELENMRDDDFDNKSGAEILESACGIDQQQQRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFWFQNKRTQMKAQHERHENAILKAENEKLRAENIRYREAFAHSTCPNCGSSSTALGEMSFDDQHLRIENSRLRDEIERMSGYGSKCTKPYYQLPTNAPTRSLDLGITNFGPQSSGFVGEMYGAADFFRSISRPSEGEKPVIVELAVSGMEELRRMAQGGEPLWVAGDGKSSGEVVLNEAEYLRSFGGGIVGKPMGFRTEASRVSAVVFMNHMKLVDIFMDATQWSTVFCGIVSRASTVEILSPGLSGNFNGALHVMSAEFQVPSPLVPTRENYFVRYCKQQTDGSWAVADVSLDTLRPSPIPNTRRKPSGCLIQELPNGYSKITWVEHVEVDETGVPTMYRTLVNSGLAFGAKRWVATLDRQSERFATSIATTIPTGDLRVISSIEGRKSMLKLAERMVTSFCAGVGASSVHAWTALPAAAGDEVRVVTRKSTDEPGRPPGVVLSAATSFWIPVSPKVVFDFLRKEKSRSEWDILSNGGLVQEMAHIANGRHSGNCVSLLRVNSANSSQSNMLILQESCTDSTGSYVIYAPVDTVAMNVVLSGCDPDYVALLPSGFAILPDGPGGGGNNGGGILELGSGGSLITVAFQILVDSVPTARLSIGSVATVNSLIKCTVERIRAAVMLEEEEEMRISQERTLKRGGAFKDRMWRTREIEEVRALTLFTQTFN 762
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2409975 2417439 + MELO3C007377.2.1 Cme08g00387 334650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00387 762 Pfam Homeodomain 50 105 IPR001356 GO:0003677
Cme08g00387 762 Coils Coil 101 133 - -
Cme08g00387 762 SMART HOX_1 48 111 IPR001356 GO:0003677
Cme08g00387 762 SUPERFAMILY Bet v1-like 231 460 - -
Cme08g00387 762 SMART START_1 237 459 IPR002913 GO:0008289
Cme08g00387 762 SUPERFAMILY Homeodomain-like 41 107 IPR009057 -
Cme08g00387 762 SUPERFAMILY Bet v1-like 481 713 - -
Cme08g00387 762 ProSiteProfiles 'Homeobox' domain profile. 47 107 IPR001356 GO:0003677
Cme08g00387 762 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN PROTODERMAL FACTOR 2 14 720 - -
Cme08g00387 762 CDD homeodomain 49 108 IPR001356 GO:0003677
Cme08g00387 762 ProSitePatterns 'Homeobox' domain signature. 82 105 IPR017970 GO:0000981|GO:0006355
Cme08g00387 762 Gene3D - 286 459 IPR023393 -
Cme08g00387 762 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 14 720 IPR042160 -
Cme08g00387 762 ProSiteProfiles START domain profile. 228 462 IPR002913 GO:0008289
Cme08g00387 762 CDD START_ArGLABRA2_like 232 458 - -
Cme08g00387 762 Gene3D - 39 123 - -
Cme08g00387 762 Pfam START domain 239 459 IPR002913 GO:0008289
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00387 Cme-Chr8:2409975 Cme11g02549 Cme-Chr11:31886646 0 dispersed
Cme01g02905 Cme-Chr1:35727737 Cme08g00387 Cme-Chr8:2409975 2.18E-25 transposed
Cme12g00460 Cme-Chr12:7573593 Cme08g00387 Cme-Chr8:2409975 2.86E-19 transposed
Cme12g01106 Cme-Chr12:18966772 Cme08g00387 Cme-Chr8:2409975 2.22E-22 transposed
Cme01g00416 Cme-Chr1:2932684 Cme08g00387 Cme-Chr8:2409975 0 wgd
Cme11g00781 Cme-Chr11:9888700 Cme08g00387 Cme-Chr8:2409975 0 wgd
Cme12g01470 Cme-Chr12:22385995 Cme08g00387 Cme-Chr8:2409975 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41760 PF01852 START 1.70E-48 CL0209 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00387 K09338 - csv:101209093 1402.88